LOC110533872 (LOC106603282)


Basic Information

Item Value
gene id LOC110533872
gene name LOC106603282
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 39920761 ~ 39964811 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618437.2
TGTAGCAGCTGCCATGTTTGGCTGCTTTGTTCAGGTTTCTTGAAGGTTTCCTGCAGATTTTTTTTAAGTGTTGCAATGGAACCGAGCTGGAGTACATTTCTATTTCAACAGGCCAATGAAGCCCTCCACCACCAGCACCAGGTGGCCCAGAACAGCCTGCTGCCGCTGCTCAACTCTGGGAATGAGCCGGTGGACCAGAAGCCTGTAATGCCCATCCTCCTGGACCAGAAACCCCCTGCCAGTGCCGCCGAGCTCCTCAAAGACAATGTGGCCTGCGGGACTGGCAGCGGCAGGGGACCCATGCccgtggtgaagaaggagcacAAGAGCAAGACACCCTTCATCTGTGGCTACTGCAACAAGGCCTTCCGTGACAGCTACCACCTGCGTCGCCACGAATCCTGCCACACGGGCGTCAAGATGGTGTCCCGGCCCAAGAAGACGGCTCAGACAGCCCCCACCATGGTGCCTCTCATCTCCACCCTGCCCAGGGAGAATAGTGGGCAGCCCTCCTACATATCCACCATCGCAGGCATCCTCACCACAGCCACCCCCTCTGTGTCTTCAGCCTCCAGCATCATGTCTCCAGCCTCTATGATCAATATACCCCAGCAGAACCAGCCCAAAAGGCCTGCCAAGCCAGTGAAGAAGAACCACGGCTGTGAGATGTGTGGCAAGGCCTTCCGAGATGTCTACCACCTGAACCGTCACAAGCTGTCCCACTCGGACGAGAAGCCCTACGAGTGCCCCATCTGCCAGCAGCGTTTCAAGAGGAAGGACCGCATGACCTACCACGTGCGCTCTCACGACGGAGGAGTCCACAAGCCCTATGTCTGTTCCGTGTGTGGAAAAGGCTTCTCCAGgCCAGACCACCTGAGCTGCCATGTGAAGCATGTCCACTCCTCAGAAAGACCGTTCAAATGCCAAGtaacggccTGTACTTCTGCCTTTGCCACCAAAGACAGACTGCGCTCCCACATGATCCGACATGAAGGGAAGGTCACCTGCAACATCTGCGGCAAGATGCTGAGCGCAGCCTACATTACCAGCCATCTAAAGACACACGGCCAGACCAACTTTAATTCCTCTAACAAAGGGGACTGGCAGTGGAACTCCTCAGGGGGACAAaaagACAGTAATGATGTCCACAACTCTGCCTCAGCCACACCTGTAACAGGCTCCGACCCCATCACCACCACGATGAACCGGGGAAACTCCATCAACAACCCCGTCACCATAGCGTCGCAAATGAACATTTCCACCAACACGGTGAATGTCAGCCTCCAGCACCCAGTCACCATCACTGGACCCATCAACATCGCCTCGATCAACATCCCTACCACGGCACACATGAATATTGCCCACCCTCTGGCCATCAGCACCCCAATGGCCATGACAATGTCCGGGCCCCTCAACATCGCCATGAGGTCCATGGAGAGTATGCCTTTTCTGTCCCAAGTCCTGCCTTCGTCCCcaccctggtaaaaaaaaaaaggtggaGAGAATTAGGCAAAACAAGAGTTGATGATGCCTCCTCCTTACCCCCATCTTTCCCCAGCCCACTCCTCAGACACTGGAAATGAAAGTTTAGCCTACTTGTGCTGTGCAGCGGGAGAGAACCTCCCTGTCACATGGCTCCAACCCAAACAATGCTACATCACAGAAAAGAGAACCAGAACAGTTGTGTAGAAGTTAGATTGGGTTTTGTCGTATCTGAATTACTTCAAAATTAGATGTAGTGAGTCGATGAAGTGTTATACAGTGATGCCTACATTAGTCGTAGTAGGATGAACAAGAGGGGAGGACTCCTCTCAAGTCTCGCTAAACGCCCATACCTTTGCAATTGGAAGATCATTTTTAAAAGCACTAATGCAATAAGTATGAATTGCTAGTTTTATTGTTCCATAGGTTCTCTTACAAAGCCAGTGTGTGTTTCTTATAAGTTGTTTTTATCTAAAGCCTGCTAATCAGTATTTAATATTTTTAGGAGAGCAGTCAAACAAAAGGGACAAAGACTTCCGTTTGGACGGAAGGTTATTTTTTCATAGCTGTGAAACTTTGTTTTTCAAATAAGAGGTATGCTCTTGAGGTACATGTTAATGTATTCTCACCATCAATAATTGAATCTGTATTTTGTTGAAGTGGATATCTGGAAATTGTCCCTCTTGActgttaaatatgtgtacagtttgttttttttctctgtgtTAGGGATGGCAGAGGTGTGCTTCTTTTGTTTGGTCATCAGTTGACGTACATTGTTTTACACAAACTGAAAGAGGAATGAGTATTGCACTGAAAGCATATCCCATGTGTCACTTAACTGCAGTATTATCAATGATCAAATTGGAGTGTTAGGTAACCAGCCTACATAATAACAGGGCCATCTAGTGGCTTGCAAATGCCATTGAGGAAATGATCCTGAAGTTCACAAATGTGTATttctttaattattattattattattattatcacgtTGGTGATGGTTTATAGTTTTGTTAGAAATATGTTATACCCTTTTTAATATTGGTTTTGATGATCCTGATAGTATGGACATTCTGCTCAGATAACACAATGAGAGTAGCCCTGTAAactttattttttgttttatttgattgaaTTCACATCTAACAAACTTGATCCTTTTCCCATGTTACCTTGTAAATATTTAACTCTccatatacatttttttgctaAAAGAAAAACGTAGATGTCCTTAAGACTAGGGATCTAAGAACTCTTTCATTTTGTGAACTGTCCATTTTAATAATCATGTCAGCAAACTGTACTTTCAATCAAACATCCATTGTCTCCGCCTGTGTCATGGTGATTTATGGATGAGGTGACGGGTGTATTTAGAACAAAACACTAATGGTTTTTGAGAAGTGTATGAAAGTTGTAGTGTGATGCAGACAATTTTAGTTGAGCCAACATGGCCTCGGCAGCACATCTCAGGCATTGAGACCCATAGATTACTAGATAAGACGTTCTTACTTGGCCATATCACCTTTGCAAGGTTTTTGTGCTGTGTGAAGTATAGTATTTCCTGAAAGATCACACACAAGATGCAGGCACATTTTTCCCACAAGTTCTTTCAAAGAAAATCCAATGATGAGTGTTTTATTATGCATTGAGTAGATGAACTATAATTGCCTGTTCTGTTTGCCAAATTTGATACAATTATGAGGTTCAAATAAGCTAATATTTTGAATTgaatatttcataattttgaaCAAGAAGAAAAGAACAATGATTTGGAAATTATTGGACCTCCTGTGAAGGCATTGAATGTATATCTTTGTACAAACTATTTTAGTTCTGAGGATGTCATAGTTACAATAGACATGTGAAAGATAACATTTTTATAAATATTTTGTATTAGAACATTAATGGTAATTTTGTATATACCTAATGAAGACCAGGCTTTCTGATTAGCAGAAAGGTAAAACATtcctacatttttttaaatgtatgtttgAAATTATTACGTAAACATGCTCAATGTTTTATGTGCCTTTTTTTTATTTGGATtgtctaaataaaataaaacatgatgGGTGGGC
>XM_021618438.2
TGTAGCAGCTGCCATGTTTGGCTGCTTTGTTCAGGTTTCTTGAAGGTTTCCTGCAGATTTTTTTTAAGTGTTGCAATGGAACCGAGCTGGAGTACATTTCTATTTCAACAGGCCAATGAAGCCCTCCACCACCAGCACCAGGTGGCCCAGAACAGCCTGCTGCCGCTGCTCAACTCTGGGAATGAGCCGGTGGACCAGAAGCCTGTAATGCCCATCCTCCTGGACCAGAAACCCCCTGCCAGTGCCGCCGAGCTCCTCAAAGACAATGTGGCCTGCGGGACTGGCAGCGGCAGGGGACCCATGCccgtggtgaagaaggagcacAAGAGCAAGACACCCTTCATCTGTGGCTACTGCAACAAGGCCTTCCGTGACAGCTACCACCTGCGTCGCCACGAATCCTGCCACACGGGCGTCAAGATGGTGTCCCGGCCCAAGAAGACGGCTCAGACAGCCCCCACCATGGTGCCTCTCATCTCCACCCTGCCCAGGGAGAATAGTGGGCAGCCCTCCTACATATCCACCATCGCAGGCATCCTCACCACAGCCACCCCCTCTGTGTCTTCAGCCTCCAGCATCATGTCTCCAGCCTCTATGATCAATATACCCCAGCAGAACCAGCCCAAAAGGCCTGCCAAGCCAGTGAAGAAGAACCACGGCTGTGAGATGTGTGGCAAGGCCTTCCGAGATGTCTACCACCTGAACCGTCACAAGCTGTCCCACTCGGACGAGAAGCCCTACGAGTGCCCCATCTGCCAGCAGCGTTTCAAGAGGAAGGACCGCATGACCTACCACGTGCGCTCTCACGACGGAGGAGTCCACAAGCCCTATGTCTGTTCCGTGTGTGGAAAAGGCTTCTCCAGgCCAGACCACCTGAGCTGCCATGTGAAGCATGTCCACTCCTCAGAAAGACCGTTCAAATGCCAAGtaacggccTGTACTTCTGCCTTTGCCACCAAAGACAGACTGCGCTCCCACATGATCCGACATGAAGGGAAGGTCACCTGCAACATCTGCGGCAAGATGCTGAGCGCAGCCTACATTACCAGCCATCTAAAGACACACGGCCAGACCAACTTTAATTCCTCTAACAAAGACAGTAATGATGTCCACAACTCTGCCTCAGCCACACCTGTAACAGGCTCCGACCCCATCACCACCACGATGAACCGGGGAAACTCCATCAACAACCCCGTCACCATAGCGTCGCAAATGAACATTTCCACCAACACGGTGAATGTCAGCCTCCAGCACCCAGTCACCATCACTGGACCCATCAACATCGCCTCGATCAACATCCCTACCACGGCACACATGAATATTGCCCACCCTCTGGCCATCAGCACCCCAATGGCCATGACAATGTCCGGGCCCCTCAACATCGCCATGAGGTCCATGGAGAGTATGCCTTTTCTGTCCCAAGTCCTGCCTTCGTCCCcaccctggtaaaaaaaaaaaggtggaGAGAATTAGGCAAAACAAGAGTTGATGATGCCTCCTCCTTACCCCCATCTTTCCCCAGCCCACTCCTCAGACACTGGAAATGAAAGTTTAGCCTACTTGTGCTGTGCAGCGGGAGAGAACCTCCCTGTCACATGGCTCCAACCCAAACAATGCTACATCACAGAAAAGAGAACCAGAACAGTTGTGTAGAAGTTAGATTGGGTTTTGTCGTATCTGAATTACTTCAAAATTAGATGTAGTGAGTCGATGAAGTGTTATACAGTGATGCCTACATTAGTCGTAGTAGGATGAACAAGAGGGGAGGACTCCTCTCAAGTCTCGCTAAACGCCCATACCTTTGCAATTGGAAGATCATTTTTAAAAGCACTAATGCAATAAGTATGAATTGCTAGTTTTATTGTTCCATAGGTTCTCTTACAAAGCCAGTGTGTGTTTCTTATAAGTTGTTTTTATCTAAAGCCTGCTAATCAGTATTTAATATTTTTAGGAGAGCAGTCAAACAAAAGGGACAAAGACTTCCGTTTGGACGGAAGGTTATTTTTTCATAGCTGTGAAACTTTGTTTTTCAAATAAGAGGTATGCTCTTGAGGTACATGTTAATGTATTCTCACCATCAATAATTGAATCTGTATTTTGTTGAAGTGGATATCTGGAAATTGTCCCTCTTGActgttaaatatgtgtacagtttgttttttttctctgtgtTAGGGATGGCAGAGGTGTGCTTCTTTTGTTTGGTCATCAGTTGACGTACATTGTTTTACACAAACTGAAAGAGGAATGAGTATTGCACTGAAAGCATATCCCATGTGTCACTTAACTGCAGTATTATCAATGATCAAATTGGAGTGTTAGGTAACCAGCCTACATAATAACAGGGCCATCTAGTGGCTTGCAAATGCCATTGAGGAAATGATCCTGAAGTTCACAAATGTGTATttctttaattattattattattattattatcacgtTGGTGATGGTTTATAGTTTTGTTAGAAATATGTTATACCCTTTTTAATATTGGTTTTGATGATCCTGATAGTATGGACATTCTGCTCAGATAACACAATGAGAGTAGCCCTGTAAactttattttttgttttatttgattgaaTTCACATCTAACAAACTTGATCCTTTTCCCATGTTACCTTGTAAATATTTAACTCTccatatacatttttttgctaAAAGAAAAACGTAGATGTCCTTAAGACTAGGGATCTAAGAACTCTTTCATTTTGTGAACTGTCCATTTTAATAATCATGTCAGCAAACTGTACTTTCAATCAAACATCCATTGTCTCCGCCTGTGTCATGGTGATTTATGGATGAGGTGACGGGTGTATTTAGAACAAAACACTAATGGTTTTTGAGAAGTGTATGAAAGTTGTAGTGTGATGCAGACAATTTTAGTTGAGCCAACATGGCCTCGGCAGCACATCTCAGGCATTGAGACCCATAGATTACTAGATAAGACGTTCTTACTTGGCCATATCACCTTTGCAAGGTTTTTGTGCTGTGTGAAGTATAGTATTTCCTGAAAGATCACACACAAGATGCAGGCACATTTTTCCCACAAGTTCTTTCAAAGAAAATCCAATGATGAGTGTTTTATTATGCATTGAGTAGATGAACTATAATTGCCTGTTCTGTTTGCCAAATTTGATACAATTATGAGGTTCAAATAAGCTAATATTTTGAATTgaatatttcataattttgaaCAAGAAGAAAAGAACAATGATTTGGAAATTATTGGACCTCCTGTGAAGGCATTGAATGTATATCTTTGTACAAACTATTTTAGTTCTGAGGATGTCATAGTTACAATAGACATGTGAAAGATAACATTTTTATAAATATTTTGTATTAGAACATTAATGGTAATTTTGTATATACCTAATGAAGACCAGGCTTTCTGATTAGCAGAAAGGTAAAACATtcctacatttttttaaatgtatgtttgAAATTATTACGTAAACATGCTCAATGTTTTATGTGCCTTTTTTTTATTTGGATtgtctaaataaaataaaacatgatgGGTGGGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618437.2 False 3563 mRNA 0.44 6 39920761 39964811
XM_021618438.2 True 3527 mRNA 0.43 5 39920761 39964811

Neighbor

gene id symbol gene type direction distance location
LOC110533871 LOC106603284 coding downstream 1439 39904172 ~ 39919322 (-)
ksr1a LOC106603285 coding downstream 27033 39843126 ~ 39893728 (-)
LOC110533108 LOC106603286 coding downstream 112125 39789877 ~ 39808636 (-)
LOC118966773 NA coding downstream 124155 39795348 ~ 39796606 (-)
LOC110533869 LOC106603287 coding downstream 144993 39771290 ~ 39775768 (-)
LOC110533878 LOC106603271 coding upstream 531909 40496714 ~ 40547393 (-)
LOC110533881 LOC106603270 coding upstream 666354 40631165 ~ 40639661 (-)
LOC110533882 LOC106603268 coding upstream 875291 40840102 ~ 40853480 (-)
LOC110533890 LOC106603263 coding upstream 1292013 41256824 ~ 41441750 (-)
LOC110533111 LOC106603235 coding upstream 1510176 41474987 ~ 41475979 (-)
G888135 NA non-coding downstream 21314 39896854 ~ 39899447 (-)
G888141 NA non-coding downstream 82888 39837604 ~ 39837873 (-)
G888113 NA non-coding downstream 86948 39833427 ~ 39833813 (-)
G888112 NA non-coding downstream 90487 39797121 ~ 39830274 (-)
G888272 NA non-coding upstream 109179 40073990 ~ 40075124 (-)
G888286 NA non-coding upstream 142399 40107210 ~ 40107587 (-)
G888287 NA non-coding upstream 143131 40107942 ~ 40108218 (-)
G888288 NA non-coding upstream 143614 40108425 ~ 40108708 (-)
G888293 NA non-coding upstream 149847 40114658 ~ 40114903 (-)
G887329 NA other downstream 703023 39217313 ~ 39217738 (-)
rpl36a LOC106568029 other downstream 735267 39183698 ~ 39185578 (-)
G885767 NA other downstream 1680202 38238950 ~ 38240559 (-)
LOC110533823 LOC106603321 other downstream 2216975 37518096 ~ 37704039 (-)
G890360 LOC106603260 other upstream 2017890 41982701 ~ 41984417 (-)
G890385 LOC100136012 other upstream 2022900 41987711 ~ 41989801 (-)
G890403 NA other upstream 2111930 42076741 ~ 42077947 (-)
LOC110533946 mpp1 other upstream 3094199 43057611 ~ 43070230 (-)

Expression


Co-expression Network