trnaa-ugc-41


Basic Information

Item Value
gene id trnaa-ugc-41
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40225670 ~ 40225745 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnaa-ugc-41
ggtcccgtgtggctcagttggtagagcatggtgtttgCAACGCCACAGacgtgggttcaattcccacaggggacca

Function

NR:

description
Deoxyribonuclease gamma precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-ugc-41 True 76 mRNA 0.58 1 40225670 40225745

Neighbor

gene id symbol gene type direction distance location
LOC110533873 LOC106603279 coding upstream 135643 39983042 ~ 40090027 (+)
LOC110533109 LOC106603283 coding upstream 247880 39975170 ~ 39977790 (+)
LOC118966774 NA coding upstream 436135 39787701 ~ 39789535 (+)
LOC110533867 LOC106603289 coding upstream 515178 39707335 ~ 39710492 (+)
LOC110533868 NA coding upstream 519091 39704518 ~ 39706579 (+)
LOC110533875 LOC106603275 coding downstream 140451 40366196 ~ 40378922 (+)
LOC110533877 LOC106603276 coding downstream 165631 40391376 ~ 40393654 (+)
LOC110533880 LOC106603274 coding downstream 244274 40470019 ~ 40475795 (+)
aatf LOC106603273 coding downstream 253994 40479739 ~ 40495940 (+)
LOC110533884 LOC105010779 coding downstream 635606 40861351 ~ 40879099 (+)
G887795 NA non-coding upstream 102634 40122763 ~ 40123036 (+)
G887787 NA non-coding upstream 116572 40109008 ~ 40109098 (+)
G887755 NA non-coding upstream 119182 40104804 ~ 40106488 (+)
G887754 NA non-coding upstream 121569 40101515 ~ 40104101 (+)
G887756 NA non-coding upstream 125800 40096172 ~ 40099870 (+)
G887878 NA non-coding downstream 24152 40249897 ~ 40250293 (+)
G887979 NA non-coding downstream 204295 40430040 ~ 40430261 (+)
G887978 NA non-coding downstream 270972 40496717 ~ 40498305 (+)
G888019 NA non-coding downstream 286698 40512443 ~ 40513908 (+)
G888021 NA non-coding downstream 288415 40514160 ~ 40547748 (+)
LOC110533845 LOC106603305 other upstream 1413531 38755443 ~ 38815017 (+)
G883966 NA other upstream 3374517 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3424085 36799376 ~ 36801589 (+)
G883473 om-i other upstream 3930123 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4539097 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1486582 41712327 ~ 41717292 (+)
G890228 NA other downstream 1852470 42078215 ~ 42154093 (+)
G891133 NA other downstream 2756937 42982682 ~ 43109676 (+)
G891188 NA other downstream 2870975 43096720 ~ 43097617 (+)
G891741 NA other downstream 3308571 43534316 ~ 43600230 (+)

Expression


Co-expression Network