LOC110533877 (LOC106603276)


Basic Information

Item Value
gene id LOC110533877
gene name LOC106603276
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40391376 ~ 40393654 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618450.2
TAACAAAAAGCCTGCTCCGCAACAAACTATGTTTTATTCACTGGTTGCACTTCCACGAGTAGAGTTTGAGTCGGGACACCAACGACCGGGCAAAAAACATCATGTTACCTTTACTAGTTGCAACTGGTGTTGTAGTTGCAGTGTATATTGTCCTTGTTAAAACTATTTTCAAAAGCTCCAAATTTAAAGGAAATGCAGCGATGGCAGGGAAGACTGTAATAGTAACAGGTGGCAACACTGGCATTGGGAAAGCCACTGCTCTGGAGCTTGCCAGGAGGGGTGCAAGAGTAATCCTGGCATGCCGCAACCAAGAGAAAGCAGAACTTGCTATAAGTGATATAAAAAGGGAGACAGGCAGCACTGATGTGGTGTACATGCAGTTGGACCTGGGGAGCCTTCAAGCAGTGCGTTCTTTCACCGAGACCTTCCTGAAGACCGAGGCTAGACTGGATCTTCTCATTAACAATGCTGGTCTGGTGGCAGATGGGCGCACTGCTGATGGCTTTGGTATTGAGTTTGGGGTCAACCACCTTGGCCACTTCCTGCTGACCTGTCTGTTGCTGGACCGCCTGAAGGAGGGCACTGGGGGCCGTGTTGTCACACTGGGCTCCATGGCCTATCGCTGGGGCAACATCGACTTTGATGCCCTTATCACTAATAAACACCTGGGCACTGGGAGGTACAGCTGGCAGTTCTTCCACGCGTACTGCAACAGTAAACTGTGCAATGTTCTCTTCAACCACGAGCTGGCCAAGAGACTGAAGGGTACCAATGTCACTTGCTACAGTGTTCACCCAGGAGTAGTGAAAACAGAGCTATCCCGAAACTGCAGCCTGTGGCAGAGATTCATCATTGAGCCAATAGCTAGACTGTTGTTCCTGGATCCAGAATCCGGTGCCCAGACCACTCTCCACTGTGCCCTCCAGGAGGGTATCGAGCCCCTGAGTGGACGCTACTTCTTCTGCTGTGCGCCGCAGGACGTGGTTGCCAAGGGCAAAGACGACGCTGTGGCCAAGAAGTTGTGGGAAGTTAGTGAACGGCTGAGTGGCCTGTTCTAGGAAAAAGGCACATTGTTACACTGCTTTTGATTTGGTGGGTTTACAGATCTGGGGGAAAATGCTTATTGAACACTCATCAAAATGGATCAATGTGACAAGAAACTGCTCATACATTAGCTGATCGCCTTTTCACTAGAGCATTGATGTTGGTGACATCCTGTTTGTGGTGTGTCTTGTATTGATGATGATCAGTGTGTAGTAAGTGTGCCAGTTCAGTCTAAAGACTTAGGAAGCTCTTGTAAAAACTGTTTGACTTATTATAATAAAAAAGATTCCAAGTGA

Function

NR:

description
dehydrogenase/reductase SDR family member 13-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618450.2 True 1340 mRNA 0.48 5 40391376 40393654

Neighbor

gene id symbol gene type direction distance location
LOC110533875 LOC106603275 coding upstream 12454 40366196 ~ 40378922 (+)
LOC110533874 LOC106603277 coding upstream 30947 40152031 ~ 40360429 (+)
trnaa-ugc-41 NA coding upstream 165631 40225670 ~ 40225745 (+)
LOC110533873 LOC106603279 coding upstream 301349 39983042 ~ 40090027 (+)
LOC110533109 LOC106603283 coding upstream 413586 39975170 ~ 39977790 (+)
LOC110533880 LOC106603274 coding downstream 76365 40470019 ~ 40475795 (+)
aatf LOC106603273 coding downstream 86085 40479739 ~ 40495940 (+)
LOC110533884 LOC105010779 coding downstream 467697 40861351 ~ 40879099 (+)
LOC110533885 LOC106603267 coding downstream 487456 40881110 ~ 40909990 (+)
LOC110533886 LOC106568122 coding downstream 516473 40910127 ~ 40917502 (+)
G887819 NA non-coding upstream 85686 40168623 ~ 40305690 (+)
G887878 NA non-coding upstream 141083 40249897 ~ 40250293 (+)
G887795 NA non-coding upstream 268340 40122763 ~ 40123036 (+)
G887787 NA non-coding upstream 282278 40109008 ~ 40109098 (+)
G887755 NA non-coding upstream 284888 40104804 ~ 40106488 (+)
G887979 NA non-coding downstream 36386 40430040 ~ 40430261 (+)
G887978 NA non-coding downstream 103063 40496717 ~ 40498305 (+)
G888019 NA non-coding downstream 118789 40512443 ~ 40513908 (+)
G888021 NA non-coding downstream 120506 40514160 ~ 40547748 (+)
G888029 NA non-coding downstream 129846 40523500 ~ 40528316 (+)
LOC110533845 LOC106603305 other upstream 1579237 38755443 ~ 38815017 (+)
G883966 NA other upstream 3540223 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3589791 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4095829 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4704803 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1318673 41712327 ~ 41717292 (+)
G890228 NA other downstream 1684561 42078215 ~ 42154093 (+)
G891133 NA other downstream 2589028 42982682 ~ 43109676 (+)
G891188 NA other downstream 2703066 43096720 ~ 43097617 (+)
G891741 NA other downstream 3140662 43534316 ~ 43600230 (+)

Expression


Co-expression Network