aatf (LOC106603273)


Basic Information

Item Value
gene id aatf
gene name LOC106603273
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 40479739 ~ 40495940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618452.2
CTATCTGGGAGTCGCGTCTTGATGACGTAGGCGTAACATGTGTGAGTTGTGAGTGAGTACGTTGAACGATGGCTGGCCACATATCACAACAGCTGGAAGATTTATTAAATCCTTTGCCCAAGTTCACAGATCCAGAGGACGATCATGATGAAGATACGAAAGCCAAGGTGGTTGAGGCGTTTGATGagggtgatgatgaggatgaagcTGTGGTTACCTTGAGTGGGCTCCGGAAGAAAGCTATCACTCTGCTGGAAGAGACTGACAAACGGTACCTGGGCAAGGCAACATCTCGTAAAAACCTGCTGAAGGAGAACGAAGGGTCTGgagaggatgatgaggatgatgatgaaaacgaagaggaggaggaggaagaagaagatgacGATGCTGATCTGGAGGATGGAGAGACTGAAGctggagatgatgatgatgaagagatTGAGAGTGACATCGCTAAAATGAAAAGCTTGGTGTCTAAGCTGAAGGAGACTGACATCACACTTTCCTCAGTGACAGACTTCCATAAGCTAACAGAGGGAATGGATGATCTTGGAGAgagtgaagatgatgatgatgaagaaagtgatgatgaggatggagagagtgaagaggaggagatTGAGAATGAAGCTGACGATGTGGAAGCTGTGATGACATTCTCTAAAGAGAAAGTGGATGAAGAGGTGGAGAAAGGGAAAGCTGTGAAAGATCAACTTGCTCTTTGGGACCAGCTACTTGAGGGGCGAATTAAAATGCAGAAAGTTCTTCTGACAGCCAATAAGCTGCCACAACCACATACCTTCCCAGAGTTCAAGAAGAGGGGCGGAGCAGAGTTTGCTGGAGCGTTGAAGAATAGTCACAAAGCCCTGAAGGCTCTCCAGAGGTCTCTACTGGAGCTACAGGACCAGCTGCTCCATCAGAACCCAGACACCAGGCCCATCTCCCTGGGCAACACCTGGGGAGCACACAGTGAGGAGGAGATTCACAGTGATGAGGAGGAGATTCACAGTGATGATgaagaggaaaggaaggaagCAGTGGAACCGACAGGTCCTCCCAAACGGAAGCTGGAGATGGCAGAGTACCCAGACTTCATGGCCAAGCGCTTTGCTGACTTCCAGCCATACCGTGATGCCACGCTGCAAAAATGGCACGACAAGACCCAGCTGACCATGGGAAAGAGCAGcaagggTTTTGGGGCATTTGACAGAAACATCCTGATCCAGGTGGAACAGGTGCTAATGGACAAGGACAGGCTGTTGAGACGCACCCAGACCAGACGCTCCGAGTACAGAGTCCTGGGCAAGCTAGAGGCCACTGCCCCTGTACCCGAGACCACCACTGCAGGGGGAGAGgGGACAGAGCAGGTGCTGAAAGCCAATACGCATCTGAAAGACCTGGACGAGGAGATCTTTGATGATGACGATTTCTATCACCAGCTTCTGCGAGAGCTAATTGAACGTAAGACGAGTGCTGCAGACCCCAATGACCAGGTGGCTATGGGCAGacaATGGCTGGCCATTCAGAAGCTCCGCAGTAAGATCAAGAAGAAAGTGGACACCAAGGCCAGCAAGGGACGCAAAGTCAGGTTCCACGTCCACAGTAAGCTGGTGAACTTCATGGCCCCCATCGACCACCTCTCCATGAATGATGGCGCACGGACTGAGTTGTTTCGCTCACTATTCGGGAAGAACTCGTTTGCTGAAAGTGCGGTGCGGGAGTGACATGCTCTGAGCGAGCAGGAGAGGTGGACAGCACAGAAGACAGAAAGCACCCAGGAGATGAACACAATACACCTCTTCTGGTCCAGTTCTGCTCCTCTAAAAGCTTATGGACAGTATCAGTCTCAAGTTTAGTTCAGACTGGACCTGACTGGTTTGGACTTGGCTTGAAGAGACTGCTTTCTCTACACATTTTGATACTGTCAGGAAAAACTACATTTTTGCCAACTTGTTTCTATTGTCCCCCTTCTGTGAATAAATACCAAGGTGATTTC

Function

NR:

description
protein AATF-like

GO: NA

KEGG:

id description
K14782 AATF, BFR2; protein AATF/BFR2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618452.2 True 1999 mRNA 0.50 12 40479739 40495940

Neighbor

gene id symbol gene type direction distance location
LOC110533880 LOC106603274 coding upstream 3944 40470019 ~ 40475795 (+)
LOC110533877 LOC106603276 coding upstream 86085 40391376 ~ 40393654 (+)
LOC110533875 LOC106603275 coding upstream 100817 40366196 ~ 40378922 (+)
LOC110533874 LOC106603277 coding upstream 119310 40152031 ~ 40360429 (+)
trnaa-ugc-41 NA coding upstream 253994 40225670 ~ 40225745 (+)
LOC110533884 LOC105010779 coding downstream 365411 40861351 ~ 40879099 (+)
LOC110533885 LOC106603267 coding downstream 385170 40881110 ~ 40909990 (+)
LOC110533886 LOC106568122 coding downstream 414187 40910127 ~ 40917502 (+)
LOC110533887 LOC106603266 coding downstream 424629 40920569 ~ 40937315 (+)
LOC110533888 LOC106603264 coding downstream 533791 41029731 ~ 41240128 (+)
G887979 NA non-coding upstream 49478 40430040 ~ 40430261 (+)
G887819 NA non-coding upstream 174049 40168623 ~ 40305690 (+)
G887878 NA non-coding upstream 229446 40249897 ~ 40250293 (+)
G887795 NA non-coding upstream 356703 40122763 ~ 40123036 (+)
G887787 NA non-coding upstream 370641 40109008 ~ 40109098 (+)
G887978 NA non-coding downstream 777 40496717 ~ 40498305 (+)
G888019 NA non-coding downstream 16503 40512443 ~ 40513908 (+)
G888021 NA non-coding downstream 18220 40514160 ~ 40547748 (+)
G888029 NA non-coding downstream 27560 40523500 ~ 40528316 (+)
G888596 NA non-coding downstream 148429 40644369 ~ 40644587 (+)
LOC110533845 LOC106603305 other upstream 1667600 38755443 ~ 38815017 (+)
G883966 NA other upstream 3628586 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 3678154 36799376 ~ 36801589 (+)
G883473 om-i other upstream 4184192 36292302 ~ 36295572 (+)
LOC110533748 prps1 other upstream 4793166 35674201 ~ 35686573 (+)
G889906 LOC106603262 other downstream 1216387 41712327 ~ 41717292 (+)
G890228 NA other downstream 1582275 42078215 ~ 42154093 (+)
G891133 NA other downstream 2486742 42982682 ~ 43109676 (+)
G891188 NA other downstream 2600780 43096720 ~ 43097617 (+)
G891741 NA other downstream 3038376 43534316 ~ 43600230 (+)

Expression


Co-expression Network