LOC110533893 (LOC106603261)


Basic Information

Item Value
gene id LOC110533893
gene name LOC106603261
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 41954207 ~ 41966800 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618482.2
CCACTACAGATCACACAGGAGTTGAGTTCATGTCAAGCCTTACAGAGAAGAGTTGAAAACTGAAAACCCGTTTTGATTAGGCTAACACTGGCTGACAGACAAAAAGGTCCCAATTGAATTGGATTACAGCCTACTCCATATTTAGGCGTATATCAATtgcagagagagaacgagagagagagagattttctcTGTCAATTTATTGCGACTGCTCAAAAGTGTTTTATGGGTAACTATTTGGTCAATCTTTCTATTCAGAACCACTAGAAGACTGTTGGAACTGGACGAGAGGTAAAGACACCTGGAGCCATACACTCGTGATGAGGGCAGCAGTGCTTTCCTCCCCACCTAATAGAGACTGTCATGAGAGCGCATCTGAGCAGTGGGAGGTTGATCCTCAACCATTACCATCCACTGTCGTCGATGACACCCAGTTTTTTAATCCCCCAATTTTAACCCGATGTATGACTCTGCCAGATGCTTTGTACAGACGACGACAGAATCCGAGAGGAGAGTGGTATGATAACACGGTGTACAGTGACGCCAACCATCACGACCAACAAATCGTCTCGATGAATACATATGAGGACCACAACGGTGCATATCAGTCTCAAGTAAAAGAAATCCCTTGGAATTCAGATGTCGGGCTGCACGATTTCAACAGCCAGTGGGATCATTCTGAGTACGATCACAGCAACTCACCTCAGAAAACAGTTGAGAACATGCACCGTAGAAAAACGACTGTGCGAGAGAAGGGCCGTCGGCAGGCTATCCGTGGGCCTGCTTACATGTTCAGTGAGCGTGGCACCAGTCTCACTTCAGAGGAGGAGCGCTTCCTAGATGCTGCTGAGTACGGGAACATCCCAGTGGTTCGTAAGATGCTGGAAGAGTCCAAGACCCTCAACGTCAACTGTGTGGACTACATGGGCCAGAATGCGCTGCAGTTGGCTGTGGGTAATGAGCACTTGGAGGTGACAGAGCTGCTGCTGAAGAAGGAGGGGCTGGCGCGTGTGGGGGATGGTCTACTCTTTGCCATCAGTAAGGGATATGTGCGCATCGTAGAGGCTATCCTGGCCCACCCTGCATTCGGAGGTGGGCTGCGCCTAACCCTAAGCCCCCTGGAGCAGGAGCTAAGAGATGATGACTTTTATGCTTACGATGAAGACGGTACACGTTTTTCCCATGACGTGACCCCGGTCATCTTGGCTGCACACTGCCAGGAGTATGAGATAGTGCACACTCTGTTGATGAAGGGAGCACGCATCGAGAAGCCCCATGACTACTTTTGTAAATGTAATGAGTGTCATGACAAGCAATGCCGTGACTCGTTCAGCCACTCCCGCTCCAGGATGAATGCCTATAAAGGGTTAGCCAGCGCTGCCTACCTCTCCCTGTCTAGTGAGGACCCTGTATTCACAGCTCTGGAGCTCAGCAACGAGCTGGCTCGCCTCGCCAACATCGAGACTGAGTTCAAGAATGACTACAGGAAGCTGTCCATGCAGTGTAAAGACTTTGTGGTGGGAGTGCTTGACTTATGCAGAGACACGGAGGAGGTGGAGGCCATTTTGAATGGGGATGTGGACCAAGCTCTGCCCAGTGATCACAGTCGACCCTGCCTCATCCGGGTCAAACTGGCCATTAAGTACGAGGTCAAAAAGTTTGTGGCCCATCCTAACTGCCAGCAGCAGCTTCTGACCCTGTGGTATGAGAACCTAGCTGGACTTAGGCAGCAGTCTGTTGGGGTCAAATGCTGGACAGTCCTGGGAGTGGCGATCGGCCTTCCTTTCCTCGCCATCGCATACTGGGTCATGCCCTGTAGTAAGTTGGGTCAGATTCTCCGCAGTCCCTTCATGAAGTTTGTGGCCCATGCTGTGTCATTCACGATCTTCCTTGGACTACTGGTAATCAATGCCTCGGACCGCTTCGAAGGGGTCAAGAACCTTCCCAATGAGACAATAACAGACCACCCTCATCAGGTGTTCAGGGTCAAAACCAGTCAGTTCTCCTGGACTGAGATGCTCATCATGAATTGGGTGCTTGGGATGATCTGGTCGGAGTGTAAGGAGATCTGGGCTGATGGGCCTAGGGAGTAcatcatgcacctgtggaacgtgCTAGACTTTGGCATGCTGTCCATCTTCGTGGCATCCTTCACAGCTCGGCTCATGGCCTTCCTGAGGGCCTCTGAGGCCCAGCTGTATGTGGACATGTATGTGCCCAACATGCCCAACATAGACCTGAGCAACGCCTCACTGCCACCAAATGTAGCATACTACACCCATGccaggaACAGGTGGTTACCCTCCGACCCTCAGCTGATCTCCGAGGGTTTGTACTCCATTGCGGTGGTGCTCAGTTTCTCCCGCATTGCCTACATCTTGCCTGCCAATGAGAGCTTCGGCCCACTTCAAATCTCCCTCGGCCGGACGGTCAAGGACATCTTCAAGTTCATGGTCATCTTCATAATGGTCTTCCTAGCTTTCATGATTGGCATGTTCAATCTATATTCCTATTACCTTGGTGCCAAGTACAACCCCGCCTTCACCACGGTGGAGGAGAGCTTTAAGACTCTATTTTGGTCCATCTTCGGCTTGTCCGAGGTTATCTCTGTGGTCTTGAAGTATGACCATAAGTTCATAGAGAACATTGGTTATGTTCTCTTTGGCGTCTACAATGTAACCATGGTAATCGTACTGCTCAACATGCTGATTGCAATGATCAATCACTCCTATCAAGAGATTGAGGAGGATGCTGATGTGGAGTGGAAGTTTGCCCGTGCTAAACTCTGGCTATCCTACTTTGACGAGGGGCGTACTTTGCCCCCACCATTTAACCTGGTTCCCAGCCCCAAGTCTTTCTACTACCTAGCTCTGCGCACAAGGGCTTGTCTGGTGAGGCTGTGCAAGGCCAAAGCTCATCACCATGACAACCAGCGTGAGACAGCCATGATCAATTTGCGATTTAAGCTTAATCAGTACAGACCTCAAACCAGGACACCAGGGCAGGATGACTTCACCATTAGAAAACCCATCAAACATCCTACTCGATACCAGAAACTGATGAAGAGGCTCATTAAGAGATATGTGCTAAAGGCTCAGGTTGACAGTGAAAATGACGAAATCAACGAAGGTGAGCTGAAGGAGATCAAGCAGGACATCTCCAGCCTGCGATATGAGCTCCTGGAGGAGAAGTCTCAGGCCACAGAGGAACTAGCTGACTTGATCCAACAGCTTGGTGACAAGCTTAGCAAGAATGCCAAGAAACCCTGATGGGAATTGAGGGGTGTTCTCTGTATAAGAACTTTGTATAAAACCTTCAAACTTAGATTCATAGTGTGTTGTTAAATTCTGGGATTGCACTCCACTTTGAGATGTAGTGTAGGCTCGCTGTAGTTGTGTTCCTCtatattcaaatatatatatatatatatatatatatatatatatatatatatatatatatatatatattacacattaAATCATTCTGCCTGTAAAGTAGTAGGATAACCTTGGCGGAATGCTGATGAATGTGTGTAGACAAGAGTattttacatttgtaaaaaaaaatgtttgtattgaaatatttagacatttttaaataaaattattattat

Function

NR:

description
short transient receptor potential channel 7-like

GO: NA

KEGG:

id description
K04970 TRPC7; transient receptor potential cation channel subfamily C member 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618482.2 True 3616 mRNA 0.48 12 41954207 41966800

Neighbor

gene id symbol gene type direction distance location
LOC118966775 NA coding upstream 550065 41401490 ~ 41404142 (+)
LOC110533888 LOC106603264 coding upstream 714079 41029731 ~ 41240128 (+)
LOC110533887 LOC106603266 coding upstream 1016892 40920569 ~ 40937315 (+)
LOC110533886 LOC106568122 coding upstream 1036705 40910127 ~ 40917502 (+)
LOC110533885 LOC106603267 coding upstream 1044217 40881110 ~ 40909990 (+)
LOC110533894 LOC106603260 coding downstream 12485 41979285 ~ 41985398 (+)
LOC110533895 LOC106603254 coding downstream 26941 41993741 ~ 42004790 (+)
LOC110533897 LOC106603248 coding downstream 104163 42070963 ~ 42077962 (+)
LOC110533908 LOC106603248 coding downstream 112742 42079542 ~ 42085755 (+)
LOC110533112 NA coding downstream 145357 42112157 ~ 42115188 (+)
G890118 NA non-coding upstream 83243 41870759 ~ 41870964 (+)
G889912 NA non-coding upstream 231132 41722715 ~ 41723075 (+)
G889907 NA non-coding upstream 235810 41718198 ~ 41718397 (+)
G889873 NA non-coding upstream 268121 41685420 ~ 41686086 (+)
G889867 NA non-coding upstream 273341 41680543 ~ 41680866 (+)
G890140 NA non-coding downstream 7795 41974595 ~ 41975201 (+)
G890184 NA non-coding downstream 10619 41977419 ~ 41977677 (+)
G890186 NA non-coding downstream 11759 41978559 ~ 41978763 (+)
G890138 NA non-coding downstream 20559 41987359 ~ 41989908 (+)
G890188 NA non-coding downstream 24277 41991077 ~ 41991452 (+)
G889906 LOC106603262 other upstream 236915 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3142068 38755443 ~ 38815017 (+)
G883966 NA other upstream 5103054 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5152622 36799376 ~ 36801589 (+)
G883473 om-i other upstream 5658660 36292302 ~ 36295572 (+)
G890228 NA other downstream 111415 42078215 ~ 42154093 (+)
G891133 NA other downstream 1015882 42982682 ~ 43109676 (+)
G891188 NA other downstream 1129920 43096720 ~ 43097617 (+)
G891741 NA other downstream 1567516 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1575666 43542466 ~ 43555517 (+)

Expression


Co-expression Network