LOC110533112


Basic Information

Item Value
gene id LOC110533112
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42112157 ~ 42115188 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021617206.2
GACAGCCCTTCCGCGACGGCATAAGATGTGGTTGTTTTCTGAAATATATGTCTGCTCTTAGAACACTAGAAGCGTCGGGTGAACAGTGGATTTAACGATGGGCCATGCTGTAAATTGTGGATATCGCTGTATTCCGGTTGTACTGCTTCTTTGCGTATGGAATTTATCTTCGGGACAGATTATCTACTTTGTCTCAGAGGAGGTGAACAAGGGAACCGTTGTTGGGAATATATCCAAGGATCTGAATCTCAATGTTCAGGAACTGGAGTCTCATATGTTTCAGATTGTTTCCGGCTCCAACAAGAAGTATTTTGATGTGAATTTAAAGACCGGGGCTCTGTTTGTGAAGGAAAAAATCGACCGAGAGGAACTCTGTATGACTAGTGAGAAATGTTCTCTAAACCTGGAGATCATTGCACAGAACCCTCTCAACATGTATCGTTTAGAAATCAATGTGTTAGATATGAATGATAACGGACCTTCATTCCCAATAAATGTTCATACTTTGAATATAACCGAATCCACATTTCAAGGCGAAAGATATCCCCTGCCCAGTGCTGACGATGCTGATATAGGAAATCATACAGTGAAAACATACAAGTTGAGTCCGAATGAACATTTCTCTTTGGATGTACAGAGCGGCAGCGAGCAGAGCATGTCTGCTGAGTTAATACTACAGAAAGCTTTAGACCGAGAGAAACAGGCTGTGATCCAGTTGTTACTGACTGCTGTTGATGGAGGAACACCTGCCAGATCCGGGACATTACAGATAATAGTGAATGTGATAGATGTGAACGATAACAGTCCCGTCTTCAGCAAACAATTGTACAAAGTACGTATAGCAGAGAACATACCAATTGGCACACATTTAATAAAACTGAACGCAAACGATGTGGACTCAGGTGTAAATGGGGAAATCGTTTATTCTTTGATAAGCCACGGGAAGGAAAAAACATTGGACGCATTTCAAATGAACAAAGTGACTGGTGAAATCACAGTTAAAGGAACTATTGATCGCGAGGAGAATGCTGCGTTTGAGCTGCATGTACAGGCCAAAGACAGGAGTGCTAGTCCTCGCACAACGCATTGTAAAGTCTTGGTAGAAGTGATTGATGTCAATGACAATGCTCCAGCGATCTCAGTAACTTCAATGATGAATGCAGTCAGAGAGGATGCAAGATCAGGTACAGCAGTTGGTCTAataacagtgtctgataaagacgGGGGTGTAAATGGAAAAGTACACTGTAAAATAGTAGACTCGGTTCCATTCAAATTGCTGTCCTCCTATAGGAACTATTATTCGTTAGTGGTAGATGGATCTCTAGATAGAGAGACTACTTCCCAGTACAATGTAACCGTTATAGCTACAGATGAAGGCATCCCACCTCTCTCCAGTAACAGTGTCATTTCTGTTTACGTCGCTGATGTGAATGACAACGCGCCTCGCTTTTCAGAAACTATATTTAATGTTTATCTAAAGGAAAATAGTCCCTTTGGAGGGCTTATTGCCAGCTTGACTGCCCATGATCCAGACATGAATGAAAACACTCAGATGTCTTATTCGTTATTAGGAGGCAATAATGGCAAACCCTTGTCTACAATGATAAACATAAACTCATTAACTGGTGAGATATATAGCATACAGTCATTTAACTTCGAAGAAGTGAATACTTTCCAGTTCCACGTTCAGGCCACGGACTCTGGTGTTCCTCCACTAAGCACCAACGTCACTGTCAACGTTTTTATCCTGGATGAGAATGACAACAGTCCTGTGATTCTCCCACCATATTCTGACCACGGCGTTAATTCTGAGAACGTTCCCTATTCTGCTGAAGCGGGATACTTTGTGGCCAAGATCAGGGCTGTAGACGCCGACTCTGGTTATAATGCGCTGCTTTCTTATCACATCTCTGAACCAAAGGGGACCAATCTCTTCAGAATAGGAACCAGCAATGGAGAAATACGGACTAAGAGACGAATGAGTGACAATGACTTAAAAACTCACCTGTTGGTCATTCTGGTGTCTGATAATGGCGAACCTTCACGGTCTGCCACAGTGTCTATTGATGTTGTGGTCGTTGAAAGTACAGGTGACACACAGACAACTTTCAGACAGCTGCCTGTAAAGGAGGAGAGTTTCTCAGATTTAAATCTGTATCTGCTCGTCGCCATTGTGTCAGTATCAGTGATATTTATACTGATCCTCATCAGTTTAATAGCTGTAAAATGCCACAGGTCAGACGGCAGTTTCAGCAGGTACAGCTCCCCAATGATCACCACGCACCCTACCGGCAGTTGGTCTTACTCCAAATCTACCCAGCAGTATGACGTGTGTTTTAGCTCCGACACACCAACGCCGTTTCCACCTGCTGATGGTGAGCTGATCAGTATTAATGGAGGGGATACTTTCCAAAGGACGCGAACTCTCCCTAACACAGAGAAGGTAAGGGCAACTATTCATTTGGCGCTTTTTTTCATTGCGTTGTCGTTTGTTTCCCACTGAAATATTACTATTATCTTGCTTGtactttgtaaatattttcttaaatatgtaaaaaaaaaaaataataataatctatcgCACGAATTTAAATCCATTATTACTACTAAGACAGTTCAAATTGTATTGGTGCGGTTTTGGTTAGCTAAAAAGAAGCTCAAAATCAATACGGTACGCTGTTAGGCGTCtctgttcagcaccatggacagcgacaTACGGTTGCATTGGTTAGTGTAAGTCTCATTCCAGCTTACATGTTTTCTCGATTCAATTGATGCATTGTTATTAATAGTCTCCTCTATTATATAAATATACCAACCTGTCGAAATATAGTAGTTCAGTTGTTTTTTGTAGAAGCAACAATGGAGCAttcagatttattttaaactgcaaaaccaaCTAGGATTGGCTGGCCTTCTCCAGGctctcgtaggctcagtcaccagtatacttttatttacaaagccattttgggtttaccaCCATTTTATTTTGCCATTTTTATTCGTCataaatgtggtgggtactc

Function

NR:

description
protocadherin alpha-3-like isoform X7

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021617206.2 True 3032 mRNA 0.41 1 42112157 42115188

Neighbor

gene id symbol gene type direction distance location
LOC110533908 LOC106603248 coding upstream 26402 42079542 ~ 42085755 (+)
LOC110533897 LOC106603248 coding upstream 34195 42070963 ~ 42077962 (+)
LOC110533895 LOC106603254 coding upstream 107367 41993741 ~ 42004790 (+)
LOC110533894 LOC106603260 coding upstream 126759 41979285 ~ 41985398 (+)
LOC110533893 LOC106603261 coding upstream 145357 41954207 ~ 41966800 (+)
LOC110533898 LOC106603251 coding downstream 2045 42117233 ~ 42150557 (+)
LOC110533900 LOC106603249 coding downstream 50426 42165614 ~ 42306016 (+)
LOC118966776 LOC106603252 coding downstream 53466 42168654 ~ 42171430 (+)
LOC110510568 LOC106594182 coding downstream 65193 42180381 ~ 42183316 (+)
LOC110533909 LOC106594182 coding downstream 74794 42189982 ~ 42192665 (+)
G890249 NA non-coding upstream 10835 42096964 ~ 42101322 (+)
G890247 NA non-coding upstream 13503 42094999 ~ 42098654 (+)
G890203 NA non-coding upstream 87847 42016405 ~ 42024310 (+)
G890205 NA non-coding upstream 88189 42020758 ~ 42023968 (+)
G890201 NA non-coding upstream 96750 42015207 ~ 42015407 (+)
G890318 NA non-coding downstream 219121 42334309 ~ 42334516 (+)
G890325 NA non-coding downstream 228715 42343903 ~ 42344109 (+)
G890560 NA non-coding downstream 244360 42359548 ~ 42359769 (+)
G890564 NA non-coding downstream 250626 42365814 ~ 42367662 (+)
G890583 NA non-coding downstream 276472 42391660 ~ 42392017 (+)
G889906 LOC106603262 other upstream 394865 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3300018 38755443 ~ 38815017 (+)
G883966 NA other upstream 5261004 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5310572 36799376 ~ 36801589 (+)
G883473 om-i other upstream 5816610 36292302 ~ 36295572 (+)
G891133 NA other downstream 867494 42982682 ~ 43109676 (+)
G891188 NA other downstream 981532 43096720 ~ 43097617 (+)
G891741 NA other downstream 1419128 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1427278 43542466 ~ 43555517 (+)
G891847 NA other downstream 1597357 43712545 ~ 43713082 (+)

Expression


Co-expression Network