Item | Value |
---|---|
gene id | LOC110533900 |
gene name | LOC106603249 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048574.1 |
NCBI id | CM023228.2 |
chromosome length | 87811138 |
location | 42165614 ~ 42306016 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
unnamed protein product |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036990316.1 | False | 5096 | mRNA | 0.45 | 6 | 42165614 | 42306016 |
XM_036990334.1 | False | 5021 | mRNA | 0.45 | 5 | 42165614 | 42306016 |
XM_036990347.1 | False | 4964 | mRNA | 0.44 | 4 | 42165614 | 42306016 |
XM_036990299.1 | False | 5148 | mRNA | 0.44 | 6 | 42173676 | 42306016 |
XM_036990317.1 | False | 5073 | mRNA | 0.44 | 5 | 42173676 | 42306016 |
XM_036990310.1 | False | 5139 | mRNA | 0.44 | 6 | 42177040 | 42306016 |
XM_036990328.1 | False | 5063 | mRNA | 0.44 | 5 | 42177041 | 42306016 |
XM_036990307.1 | False | 5250 | mRNA | 0.44 | 6 | 42199905 | 42306016 |
XM_036990325.1 | False | 5173 | mRNA | 0.44 | 5 | 42199907 | 42306016 |
XM_036990340.1 | False | 5112 | mRNA | 0.44 | 4 | 42199911 | 42306016 |
XM_036990312.1 | False | 5180 | mRNA | 0.45 | 6 | 42211444 | 42306016 |
XM_036990329.1 | False | 5101 | mRNA | 0.45 | 5 | 42211448 | 42306016 |
XM_036990344.1 | False | 5041 | mRNA | 0.45 | 4 | 42211451 | 42306016 |
XM_036990314.1 | False | 5185 | mRNA | 0.44 | 6 | 42214915 | 42306016 |
XM_036990332.1 | False | 5109 | mRNA | 0.44 | 5 | 42214916 | 42306016 |
XM_036990346.1 | False | 5049 | mRNA | 0.44 | 4 | 42214919 | 42306016 |
XM_036990313.1 | False | 5170 | mRNA | 0.45 | 6 | 42219519 | 42306016 |
XM_036990331.1 | False | 5095 | mRNA | 0.45 | 5 | 42219519 | 42306016 |
XM_036990345.1 | False | 5037 | mRNA | 0.45 | 4 | 42219520 | 42306016 |
XM_036990311.1 | False | 5191 | mRNA | 0.44 | 6 | 42223177 | 42306016 |
XM_036990330.1 | False | 5115 | mRNA | 0.44 | 5 | 42223178 | 42306016 |
XM_036990343.1 | False | 5056 | mRNA | 0.44 | 4 | 42223180 | 42306016 |
XM_036990308.1 | False | 5160 | mRNA | 0.45 | 6 | 42226854 | 42306016 |
XM_036990326.1 | False | 5084 | mRNA | 0.45 | 5 | 42226855 | 42306016 |
XM_036990341.1 | False | 5026 | mRNA | 0.44 | 4 | 42226856 | 42306016 |
XM_036990309.1 | False | 6279 | mRNA | 0.43 | 6 | 42229735 | 42306016 |
XM_036990327.1 | False | 6203 | mRNA | 0.43 | 5 | 42229736 | 42306016 |
XM_036990342.1 | False | 6144 | mRNA | 0.43 | 4 | 42229738 | 42306016 |
XM_036990297.1 | False | 6123 | mRNA | 0.43 | 6 | 42233455 | 42306016 |
XM_036990305.1 | False | 5818 | mRNA | 0.44 | 5 | 42233685 | 42306016 |
XM_036990319.1 | False | 5753 | mRNA | 0.43 | 4 | 42233693 | 42306016 |
XM_036990300.1 | False | 5233 | mRNA | 0.45 | 6 | 42262943 | 42306016 |
XM_036990318.1 | False | 5156 | mRNA | 0.45 | 5 | 42262945 | 42306016 |
XM_036990333.1 | False | 5098 | mRNA | 0.45 | 4 | 42262946 | 42306016 |
XM_036990301.1 | False | 5323 | mRNA | 0.45 | 6 | 42265962 | 42306016 |
XM_036990304.1 | False | 5248 | mRNA | 0.45 | 6 | 42273300 | 42306016 |
XM_036990322.1 | False | 5173 | mRNA | 0.45 | 5 | 42273300 | 42306016 |
XM_036990338.1 | False | 5116 | mRNA | 0.44 | 4 | 42273300 | 42306016 |
XM_036990303.1 | False | 5222 | mRNA | 0.45 | 6 | 42282257 | 42306016 |
XM_036990321.1 | False | 5146 | mRNA | 0.45 | 5 | 42282258 | 42306016 |
XM_036990337.1 | False | 5088 | mRNA | 0.45 | 4 | 42282259 | 42306016 |
XM_036990302.1 | False | 5226 | mRNA | 0.45 | 6 | 42288532 | 42306016 |
XM_036990320.1 | False | 5150 | mRNA | 0.45 | 5 | 42288533 | 42306016 |
XM_036990335.1 | False | 5092 | mRNA | 0.45 | 4 | 42288534 | 42306016 |
XM_036990298.1 | False | 6436 | mRNA | 0.45 | 6 | 42291306 | 42306016 |
XM_036990315.1 | False | 6359 | mRNA | 0.45 | 5 | 42291308 | 42306016 |
XM_036990324.1 | False | 6138 | mRNA | 0.44 | 4 | 42291472 | 42306016 |
XM_036990306.1 | False | 5860 | mRNA | 0.46 | 6 | 42295159 | 42306016 |
XM_036990323.1 | False | 5784 | mRNA | 0.46 | 5 | 42295160 | 42306016 |
XM_036990339.1 | True | 5726 | mRNA | 0.46 | 4 | 42295161 | 42306016 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110533898 | LOC106603251 | coding | upstream | 15057 | 42117233 ~ 42150557 (+) |
LOC110533112 | NA | coding | upstream | 50426 | 42112157 ~ 42115188 (+) |
LOC110533908 | LOC106603248 | coding | upstream | 79859 | 42079542 ~ 42085755 (+) |
LOC110533897 | LOC106603248 | coding | upstream | 87652 | 42070963 ~ 42077962 (+) |
LOC110533895 | LOC106603254 | coding | upstream | 160824 | 41993741 ~ 42004790 (+) |
LOC118966631 | LOC106603216 | coding | downstream | 90303 | 42396319 ~ 42407082 (+) |
LOC110533929 | LOC106603215 | coding | downstream | 127864 | 42433880 ~ 42455077 (+) |
LOC110533930 | LOC106603214 | coding | downstream | 189186 | 42495202 ~ 42531033 (+) |
LOC110533931 | LOC106603211 | coding | downstream | 232400 | 42538416 ~ 42542857 (+) |
LOC118937078 | NA | coding | downstream | 235899 | 42541915 ~ 42541985 (+) |
G890228 | NA | non-coding | upstream | 11521 | 42078215 ~ 42154093 (+) |
G890249 | NA | non-coding | upstream | 64292 | 42096964 ~ 42101322 (+) |
G890247 | NA | non-coding | upstream | 66960 | 42094999 ~ 42098654 (+) |
G890203 | NA | non-coding | upstream | 141304 | 42016405 ~ 42024310 (+) |
G890205 | NA | non-coding | upstream | 141646 | 42020758 ~ 42023968 (+) |
G890318 | NA | non-coding | downstream | 28293 | 42334309 ~ 42334516 (+) |
G890325 | NA | non-coding | downstream | 37887 | 42343903 ~ 42344109 (+) |
G890560 | NA | non-coding | downstream | 53532 | 42359548 ~ 42359769 (+) |
G890564 | NA | non-coding | downstream | 59798 | 42365814 ~ 42367662 (+) |
G890583 | NA | non-coding | downstream | 85644 | 42391660 ~ 42392017 (+) |
G889906 | LOC106603262 | other | upstream | 448322 | 41712327 ~ 41717292 (+) |
LOC110533845 | LOC106603305 | other | upstream | 3353475 | 38755443 ~ 38815017 (+) |
G883966 | NA | other | upstream | 5314461 | 36849646 ~ 36851153 (+) |
LOC110533788 | NA | other | upstream | 5364029 | 36799376 ~ 36801589 (+) |
G891133 | NA | other | downstream | 676666 | 42982682 ~ 43109676 (+) |
G891188 | NA | other | downstream | 790704 | 43096720 ~ 43097617 (+) |
G891741 | NA | other | downstream | 1228300 | 43534316 ~ 43600230 (+) |
G891740 | LOC106603170 | other | downstream | 1236450 | 43542466 ~ 43555517 (+) |
G891847 | NA | other | downstream | 1406529 | 43712545 ~ 43713082 (+) |