LOC118966776 (LOC106603252)


Basic Information

Item Value
gene id LOC118966776
gene name LOC106603252
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42168654 ~ 42171430 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990349.1
TTTGTGTGGTGACTGCTTTCTTGCTTAAAGCCTTTCACGTTGGATACCCTTACCAAGGTAGAGGTCATATTTGCAGAAGTTTTTGTATATATAGCCTATACTAAGAGGTTTGGGATCATTTGATTAATCTGAATTTTATTATGGAATATAAAAGAGGTTCCATATTGAGGCGAGGGCGATGGACCACCTTTGTCTTCCTATTATTGACCGTCCATCAGTGTGTCGGGGATATTCGCTATTCCATTGCAGAAGAAATTAAACGAGGTTCTGTGGTTGGGAGATTTTCTCAGGATTTGGGAATCGATGTAAAAACACTGTCCACCAGAAGACCAAGGATCGAATTCGAAGGTAGTACACGATACTGCGACATTAACCAGAAGAATGGAGATTTGATTGTGAACGAGCggatggacagagaggagctgtgCGGACAAAGGCCGTCGTGTGCTTTGCATTTTGACTTCTTTTTGGAAAACCCTCTAGAGTTGCACCGTGTCACACTTGAAATCCAAGATGTCAACGACAATTTCCCAACATTTCCCAATGAAGTAATCAAATTAGAGATCCGAGAATCGGCCAATAAAGGAGAGCGATTTTCCATTGATGAGGCCCTCGACACAGATACGGGAGTCAATTCAGTTCAGGGTTATACTCTATCGGCAAATGAACATTTCACCTTGTCTGTTCACACAAGTGCTGATACGGGTAAATATGCAGAGATTGTACTAGAGCATGAACTAGACCGCGAAAAACAGGACGAACTATCACTTATTCTGACAGCTTATGATGGCGGAAAGCCACAGAAATCTGGCACAGTGGTTATACAGGTCCGGGTACTAGATGCTAATGATAATGTCCCTGTATTTACGCAGTCTATTTATAAGATGAGTGTGCCTGAAAACGCTCCATTGGGTACTGCCGTGGTCACTGTCAGTGCCAGCGATGCAGATGAAGGGGCGAATGGACAGGTTACATATGAATTTAGTCATATTTCTATCAAAACAAAAAATACTTTCTCTATTGATCCAAGAAGTGGAGAGATTAAAATAAAATCAATGATAGATTTTGAAGATACGTCGTCCTTTGAACTGCGAGTTAAAGCTAAAGATGGAGCAGGTCAGGCTGCTTCATGTAAAGTTATTGTCGACGTCGCTGATATTAATGACAACGCCCCAGTCATACTTATTAAGTCATTCAAATCACCATTGCCAGAAAACTCACCAGCCGGTACAGAGGTCGCCTTCATTTATGTACAGGACAGAGATTCTGAGTCCAATGGCAAAGTAATATGTTCTATTGAGCAGAACACATACTTCAAATTGTCCCCGTCaatcaaaaaacacatttccctaaTAACTGCTGTGGAATTGGATCGTGAGACACAGTCAGAATACAACATCACTCTTATTGCAACCGATGAAGGACATCCTCCACTGTCGTCATTTCAAACTATTACGTTAATTGTTTCTGATGTGAATGACAACCAACCTGTGTTTGACAAACAATCCTACAACGCCTACGTGACTGAAAATAACAATCCGGGCTCCTCTATGTGTTCTGTTACTGCCAGAGACCCAGACTGGAGACAGAACGGCACGGTGGTCTATTCTCTATTGCACAGTGATGTGAACGGTGTTCCGGTGTCCTCATTTGTATCCATTAACGGAGACACAGGGGTGATCCACGCAGTGAGAGCATTTGATTATGAGCAGTTTAGGAGCTTCAAAGTCCACGTTGTAGCCAGAGACAATGGTTCTCCTCCACTCAGCAGTAACGTGACTGTGAGTGTCTACATAACAGATGAGAATGATAACTCTCCCCAGATATTATACCCTGCTCCAGCAGGGAACTCCTTGATGACTGAGATGGTCCCCAAAGCTGCTCTGGCGGGGTCACTGGTTTCCAAGGTGATAGCTGTGGATGCTGACTCTGGACAGAACGCGTGGCTTTCATATCACATCGTGAAATCGACTGATCCGGGACTTTTCACTGTTGGTATCCACAGCGGAGAGATCAGGGCACAACGGGACATTTCTGAATCTGACAGTATGAAGCAGAACCTTGTTATATCAATAAAGGACAACggacagccctctctctctacaacctgTGATGTGTATTTACTCATATCAGATAACTTGGCTGAGGTTCCAGAACTGAAAGACATGACTTATGAGGATAGTTCCAAACTCACATCCTATTTGATCATTGGTCTGGTCTCTGTTTCCACCTTTTTCCTGACTTTCATTATTCTCATCCTGGCCGTGAGGTTCTGTGGTAGGCGAAAGCCTAGAATGTTGTTTGATGGAGCAGTCGCCATTCCCAGCGCGTATTTCCCTCCCAACTATGCAGAGGTGGATGGAGCTGGAACTCTCCGTAGTTCTTACAATTATGATGCATACCTGACAACGGGCTCACGCACCAGTGACTTCAAGTTTGTCCGATCTTACAATGACAGCACGCTGCCTGCTGATCAGACACTAACAAGATGTCCAGATACATTATTAGAAGGGAGTATCACCACGCTCAACACTGCAGGAGAGGCGAATGAGGTAAGCCTTCACTCATCTGAGATACCACCGTTTATACGTGAGCGGTTTCATTATGTGAGAATGGGTTATGCATGATGAAAATACATTCTGGGCCTTAATGGCTTCTGCCATCCTATAGAAACAGTAGGTCTTATACTCGTTTTAGATGATAAGATCTTAGTAGGGTACAATGTGGAATTTATCCACTCATTGTTTtgtttgattggttgtgttttaAAGGTGATC

Function

NR:

description
PREDICTED: protocadherin beta-16-like

GO: NA

KEGG:

id description
K16494 PCDHB; protocadherin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990349.1 True 2777 mRNA 0.43 1 42168654 42171430

Neighbor

gene id symbol gene type direction distance location
LOC110533898 LOC106603251 coding upstream 18097 42117233 ~ 42150557 (+)
LOC110533112 NA coding upstream 53466 42112157 ~ 42115188 (+)
LOC110533908 LOC106603248 coding upstream 82899 42079542 ~ 42085755 (+)
LOC110533897 LOC106603248 coding upstream 90692 42070963 ~ 42077962 (+)
LOC110533895 LOC106603254 coding upstream 163864 41993741 ~ 42004790 (+)
LOC110510568 LOC106594182 coding downstream 8951 42180381 ~ 42183316 (+)
LOC110533909 LOC106594182 coding downstream 18552 42189982 ~ 42192665 (+)
LOC110533901 LOC106603244 coding downstream 105317 42276747 ~ 42279665 (+)
LOC118966631 LOC106603216 coding downstream 224889 42396319 ~ 42407082 (+)
LOC110533929 LOC106603215 coding downstream 262450 42433880 ~ 42455077 (+)
G890228 NA non-coding upstream 14561 42078215 ~ 42154093 (+)
G890249 NA non-coding upstream 67332 42096964 ~ 42101322 (+)
G890247 NA non-coding upstream 70000 42094999 ~ 42098654 (+)
G890203 NA non-coding upstream 144344 42016405 ~ 42024310 (+)
G890205 NA non-coding upstream 144686 42020758 ~ 42023968 (+)
G890318 NA non-coding downstream 162879 42334309 ~ 42334516 (+)
G890325 NA non-coding downstream 172473 42343903 ~ 42344109 (+)
G890560 NA non-coding downstream 188118 42359548 ~ 42359769 (+)
G890564 NA non-coding downstream 194384 42365814 ~ 42367662 (+)
G890583 NA non-coding downstream 220230 42391660 ~ 42392017 (+)
G889906 LOC106603262 other upstream 451362 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3356515 38755443 ~ 38815017 (+)
G883966 NA other upstream 5317501 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5367069 36799376 ~ 36801589 (+)
G891133 NA other downstream 811252 42982682 ~ 43109676 (+)
G891188 NA other downstream 925290 43096720 ~ 43097617 (+)
G891741 NA other downstream 1362886 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1371036 43542466 ~ 43555517 (+)
G891847 NA other downstream 1541115 43712545 ~ 43713082 (+)

Expression


Co-expression Network