LOC110510568 (LOC106594182)


Basic Information

Item Value
gene id LOC110510568
gene name LOC106594182
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42180381 ~ 42183316 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934441.1
TTTCACCGAAGAGCAGTCGGATAACAATCGTTTTACTATTCCTTTTGAGAGGCTAATATTGTACTCTTACGTTGCAGTATCATTTCGACTAGTTTTGAACTCATATGTTGACAATTTGTTTTATTCATCCAGAATGGGGTACACAGGATCTTCGGTTTTTACCTTATTGTTCCGCCTGGCTTTTTGTCATTGCCTAATGCGCATCAGCAATGGAGACTTGAGCTATTCTATTCCAGAGGAGATGAAACGCGGATCTGTGATCGGAAATGTAGCTAAGGATCTGGGGCTGGATGCTAAGAGACTTTCAGGTCGTAAAGCTCGTTTGGATATGGATGGCAGTCGTCAACGTTACTGTGACATCAATGTGAATACCGGAGATTTAATTGTGGCTGAAACAATAGACAGGGAGGAGCTGTGTGGACCGAAGGTTTCTTGTTCTTTAAAATACGAGCTTGTGCTGGAAAAACCTCTTGAATTACATCGCATAACTGTACAAATACAAGATATAAATGACAATTCACCACGGTTTCCCAATGCAGGTATTGATCTAGAAATTCAGGAATCTGCTTACAAAGGCGCACGATACCCCTTGGATGAACCTCATGACTCTGACATAGGATTAAATGGTATTCAAAGCTATTCACTGGAGAGGAATGGCTATTTTATTTTGGACGTTCAAACGAGCTCAGACGGAGGAAAATATGGCGAGTTAGTGTTAGAAAAAGAGCTGGATCGAGAACAACAACAAGAGGTGACGTTGTTACTTACTGCTGTTGATGGTGGGACTCCGCAGAGATCTGGTACTGTAGTTATACACGTCACTGTGTTGGATGCTAACGATAATAAACCAGTGTTTAGCCAGACAGTGTATAAAGTCGGTTTGCCTGAAAATTCTCCAACAGGGACTGTTGTAGTTGCAGTTAGTGCTAGTGATGAAGACGAAGGGGCAAATGGAGAAGTATCATATGAGTTCAATCGTATTTCAGATAAAGCAGCTAAACTGTTTTCCATCGACAAAAATACTGGCGAGATTAAAGTGCAGGGTCCCATAGATTATGAAGAAAATACAGAATACGAAGTGCGTGTCCAGGCTAAAGATGGGTCTGGCTTAGCTGGCAATGCAAAAGTAATGATAGAAATCACTGACCTAAATGACAACGCACCGGTAATATTGATCAAATCCTTTAACAATCCCATCCCCGAGAATGTGTTACCTGGAACAGAGGTGGGGATCCTAAATGTACAAGATGAAGATTCAGAGGGAAATAGACAGGTCCGCTGCTCCATTCAACAAAATGTTCCTTTCAAACTGAACCCCTCAATCAAAAACTATTATTCTCTGATAACAACAGGTGAACTAGACCGTGAGATAATATCAGATTATAACATAACTATCACCGCCACTGACGAGGGGTCTCCACCTTTATCCTCCTCAATGACTATTCATGTATCTGTGTCAGACGTGAATGACAATCCACCTGTGTTTGAAGAACAATCCTACAGCGCCTATGTGACTGAAAATAACAAGCCTGGCTCCTCAATATGTTCGGTTACTGCCAGAGACCCAGACTGGAGACAGAACGGCACTGTGGTCTATTCTCTATTGCCTAGTGGTGTCAATGGTGTTCCGGTGTCTTCATTTTTATCCATCAACGGAGAAACGGGGGTGATCCATGCTGTGAGAACATTTGATCATGAGCAGTTTAGGAGCTTCAAGGTCCACGTTGTAGCCAGAGACAATGGTTCTCCTCCACTCAGCAGTAACGTGACTGTGAGTGTCTTCATAACAGATGAGAATGATAATTCTCCCCAGATATTATACCCTGCTCCAGCAGGGAACTCCTTGATGACTGAGATGGTCCCCAAAACTACTCTGGCGGGGTCCCTGGTTTCCAAGGTAATAGCTGTGGATGCCGACTCTGGACAAAACGCGTGGCTTTCATATCTCTTCGTGAAATCGACTGATCCGGGACTTTTCACTATTGGTCTCCACAGCGGAGAGATCAGGGCACAACGGGACATTGCTGAATCTGACAGTATGGAGCAGAACCTTGTTATATTAGTGAAAGATAACgggcagccctctctctctacaacctgTGATGTGTTTTTACTCATATCAGATAACTTGGCTGAAGTTCCAGAACTGAAAGACATGGCTTATGAAGATAGTTCCAAATTAACTTCCTATTTGATCATCGCGCTGGTCTCTGTTTCCACCTTTTTCCTGACTTTCATTATTCTCATCCTGGCCGTGAGGTTCTGCCGCAGTAGAAAGCCCAGAATGTTGTTTGATGGAGCAGTCACCATTCCCAGCGCGTATTTCCCTCCCAACTATGCAGAGGTGGATGGAGCTGGAACTCTCCGTAGTTCTTATAACTATGATGCATACCTGACAACGGGCTCACGCACCAGTGACTTCAAGTTTGTCAGATCTTACAATGACAGCACTCTGCCTGCTGATCAGACACTAACAAGATGTCCAGATACATTATTAGAAGGGAGTATCACCACGCTCAACACTGCAGGAGAGGCGAATGAGATGTTCTAA

Function

NR:

description
protocadherin beta-15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934441.1 True 2551 mRNA 0.44 2 42180381 42183316

Neighbor

gene id symbol gene type direction distance location
LOC118966776 LOC106603252 coding upstream 8951 42168654 ~ 42171430 (+)
LOC110533898 LOC106603251 coding upstream 29824 42117233 ~ 42150557 (+)
LOC110533112 NA coding upstream 65193 42112157 ~ 42115188 (+)
LOC110533908 LOC106603248 coding upstream 94626 42079542 ~ 42085755 (+)
LOC110533897 LOC106603248 coding upstream 102419 42070963 ~ 42077962 (+)
LOC110533909 LOC106594182 coding downstream 6666 42189982 ~ 42192665 (+)
LOC110533901 LOC106603244 coding downstream 93431 42276747 ~ 42279665 (+)
LOC118966631 LOC106603216 coding downstream 213003 42396319 ~ 42407082 (+)
LOC110533929 LOC106603215 coding downstream 250564 42433880 ~ 42455077 (+)
LOC110533930 LOC106603214 coding downstream 311886 42495202 ~ 42531033 (+)
G890228 NA non-coding upstream 26288 42078215 ~ 42154093 (+)
G890249 NA non-coding upstream 79059 42096964 ~ 42101322 (+)
G890247 NA non-coding upstream 81727 42094999 ~ 42098654 (+)
G890203 NA non-coding upstream 156071 42016405 ~ 42024310 (+)
G890205 NA non-coding upstream 156413 42020758 ~ 42023968 (+)
G890318 NA non-coding downstream 150993 42334309 ~ 42334516 (+)
G890325 NA non-coding downstream 160587 42343903 ~ 42344109 (+)
G890560 NA non-coding downstream 176232 42359548 ~ 42359769 (+)
G890564 NA non-coding downstream 182498 42365814 ~ 42367662 (+)
G890583 NA non-coding downstream 208344 42391660 ~ 42392017 (+)
G889906 LOC106603262 other upstream 463089 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 3368242 38755443 ~ 38815017 (+)
G883966 NA other upstream 5329228 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 5378796 36799376 ~ 36801589 (+)
G891133 NA other downstream 799366 42982682 ~ 43109676 (+)
G891188 NA other downstream 913404 43096720 ~ 43097617 (+)
G891741 NA other downstream 1351000 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 1359150 43542466 ~ 43555517 (+)
G891847 NA other downstream 1529229 43712545 ~ 43713082 (+)

Expression


Co-expression Network