LOC118966777 (LOC106603212)



Basic Information


Item Value
gene id LOC118966777
gene name LOC106603212
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42544611 ~ 42553273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036990356.1
GAATTGATCCGAACTGCGATTGCCCTGCAAAGTCAGTGTGCCAAACATCAGCAAATCGCAAATGGACGGATCCGTCAGAGCCGCGAAGGATGGTGGAAAACTCGCTGCCATAGAAAGCCATAGAACGCAAACTATCCAAAACGAGATTTAATCGGGAAAGAGCTGGATGCTTAACTCAACATAACACATTTTTACTCTTAGGCTACATCATAACCTTATGCAACATCGGCTCTGTCCGAGGACTGCGTAAAGGTACTGGAAAGGTTTTGGGAGCGAGAATGGAGCGGGCGCCAAGCTCAAGCCCCAGCGGCGTAAATCAGCCCTCACAACCTCCCCAGCATGAACCTATTAGTTTCGGCATTGACCAGATTCTCAGTGGTACCGACCAGGACGGTTCACAGAACACCACCCGGAGTGGTTCGGATACTGGGAACTTCACAAGTGGAGGAAGTTACCACCTCGTTAGTCCAAGTGGAGCCAGTGCAGCGCCCTTCACTTCTCTTTCCGGTTCTTTCCATGGAATCGCATCATCATACGAAGAATCAAGTGCATACGGAGTGAACTTGACTTTCACCCCAGGAGGGGTGATACGAGTCCCGGCGCACAGGCCGCTGGCCGCCGCAGTGCCTCCTCCTATAGCCAGCGCGGTACCAGGGCTAGGCAGCATCAGCTTCCCCTGGATGGAGAGCAGCCAAAGATTCGCAAAGGAAAGATTCGCAGctgcactgACGCCATTCACAGTGACCCGGCGGATTGGTCACCCCTATCAGAACCGCACCCCTCCGAAGAGGAAGAAGCCGCGGACATCTTTCTCCCGGGTGCAGATCTGTGAGCTGGAGAAACGCTTTCATAGACAGAAGTACCTGGCCAGCGCTGAACGGGCGGCTCTCGCCAAGACCCTCAAGATGACCGACGCACAGGTCAAGACCTGGTTCCAGAACCGCAGGACCaagtggagGCGACAGACAGCTGAGGAGAGGGAGGCGGAGCGGCAGCAGGCCAATCGGCTGATGATCCAGCTGCAGCATGATGCCTTCCAGAAGTCCTTGAGTGACTCGGTTCCGTCCGATCCACTCTGCATCCACAACTCCTCCCTGTTCGCCCTGCAGAACCTGCAGCCGTGGGCCTCTGAGGAAGCAGCAAAGATGGGCCGTGTCACCGCTCTAGTGTGACAGGGACAGGGTGGGGCCCTCTGGACATTACACACTCTGACTGATATCTAAGAAACTGCACAAAGGTGATCCGTGAGCAAATTGAAATGAATGATTTATTATTGTCCATCCAGAACATAGCCAAATTGTGTCTGAGGGAGTCTGAAGATTAAACAAAAACTCCAGTTCCTAAGTACCCTGATATGATCTGGACATGCAGAATGTTTGCTGGGTCCTTTGTGTCAGACGCATCCTGGGTGGTAGCCTATGAGCTGTGGCGATGTACGTGACACACGTCACTGAGCCAGCCCTATAATTCCAAACTGACATATTGACTGACTGACACAGCACAGATTGGCTCATCTGTTTCTCCCACGTCCCATCTGTTCCTTCACCACTACAGTTACACTATCAGCTCTGTGCCCCTGCATCTCAGAGCCGACCAGTCTGCAAAGGATGAGAAATGgatgggaaacagagagagagaatacactaATGTTCTGAGAATATATAAAATGTCGTTGTTGCATGGAATCATTCTCATCATCCTCTCATTTTCCATCTTGAATTCCATCTAATTGTTTCCTCTTTAGACTGCTGGTTAGCAGGATGTTTTTTGTACTGGGTGGAGACAGACTTAGGCAAACACTGACCCTAAAAAGCCACTGAATGTATTACACGCTTTGATTCCAATCTATTAACACTCTAAAGCTCAATTAGGGTGAATAATTACATTTGAATAAGAAGGCAAACTATAAAACCAGATAGCCACAAGTGAGATATTGTAGAATCAACTGCTTGCTGTTCTATAGGGCAAGTGTTTAGTGATGTCTGGACAAACCAGATAACTGCTACCTCTTCAAACAGGAGCCACCCAGAACACTAGCAAGACAtctactttttttctctctctctctctctatatatatataaaactcatTGAAGGGTTAATACACAGCTCAAGGGCTATTTTAGAATAATAACATTTGCCAGTGGGACAAGAAGCAATCCAGTAAAAGAGGAAGCTAATTATTTATAGTGTTGTTTTATTCATGCCAGGCTGGACCCATTCACTGGGAAGTGTGGTGCATGAGGGTGGTATATCAGACCTGAGAGGTGGAGAGTCTGGTTGACTTAGTTCAAATGTGGTGTAAAGGACTTTGTTGTATGAGTCATCTGAGAATATTTGACGCGGTGAAATAGATGGATGATAACAGCATCTCTCCCCGTGTATCATATTTGACAAATATGTAAATAACTAAACAAAacctaataataataaaaaagcaTTCTCTTGTTTTAGCTTTGAACCAC

Function


NR:

description
unnamed protein product

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15607 TLX3, HOX11L2; T-cell leukemia homeobox protein 3

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036990356.1 True 2465 mRNA 0.48 3 42544611 42553273

Neighbor


gene id symbol gene type direction distance location
LOC110534921 NA coding downstream 190918 42345716 ~ 42353693 (-)
LOC110533896 LOC106603257 coding downstream 532885 42004826 ~ 42011726 (-)
LOC110533892 LOC106603262 coding downstream 737731 41712311 ~ 41806880 (-)
LOC110533111 LOC106603235 coding downstream 1068632 41474987 ~ 41475979 (-)
LOC110533890 LOC106603263 coding downstream 1102861 41256824 ~ 41441750 (-)
LOC110533933 NA coding upstream 21500 42574773 ~ 42583308 (-)
LOC110534922 LOC106603221 coding upstream 36308 42589581 ~ 42593111 (-)
LOC110533934 LOC106603209 coding upstream 55314 42608587 ~ 42616547 (-)
LOC110533935 LOC106603208 coding upstream 97012 42650285 ~ 42707718 (-)
LOC110533936 LOC106603206 coding upstream 259314 42812587 ~ 42828697 (-)
G890798 NA non-coding downstream 315 42544011 ~ 42544296 (-)
G890797 NA non-coding downstream 730 42543462 ~ 42543881 (-)
G890793 NA non-coding downstream 13166 42531229 ~ 42531445 (-)
G890762 NA non-coding downstream 13586 42522665 ~ 42531025 (-)
G890768 NA non-coding downstream 57750 42486516 ~ 42486861 (-)
G890827 NA non-coding upstream 28843 42582116 ~ 42582489 (-)
G890843 NA non-coding upstream 71422 42624695 ~ 42624908 (-)
G890846 NA non-coding upstream 74412 42627685 ~ 42627899 (-)
G890815 NA non-coding upstream 76530 42629803 ~ 42630099 (-)
G890852 NA non-coding upstream 85435 42638708 ~ 42638910 (-)
G890403 NA other downstream 466664 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 554810 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 560194 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 1997244 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2650908 39843126 ~ 39893728 (-)
LOC110533946 mpp1 other upstream 505737 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 640409 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 1130301 43681449 ~ 43686604 (-)
G892965 NA other upstream 1157212 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1646123 44199178 ~ 44209264 (-)

Expression



Co-expression Network