LOC110533935 (LOC106603208)


Basic Information

Item Value
gene id LOC110533935
gene name LOC106603208
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42650285 ~ 42707718 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990358.1
ccgtTCCGTTCCCGGCTTCATTCTTGTGAGTCCATCACCGTCCCGCCTGTATGCTGCCACTGGATCTAAGTCTGCTGGATTACCGCGCCGTTTCTCCGCTCATTATTCCTGACGCTTTTCCACGGCAGGCAAAGTTGGGCATCCAGAAACTACATGGTGACTGCCTGTATATTTTTATGCTGTTTGAGCTTCAAAATGATTTCACTCTTCACTGGAAGAAGTGTAATTTTTATATGACAGAGAAAAGAGCTCTGTCTCTTTTTGGGGGACTGTTTACTTATAGgataggctagtgattttgcaATATTTTGAACTTCGTTGTCTGGTAATTTGGTCGTGAGGGACAAGATGGGTGGGGTTAAAAATGTAAGAAATGGAGATGtctttacatgttttttttatcaaaCAGACATTCTAACCTCAATCACCCTTCTTTATTTTGACTGATGATGTGACCTTACTGGTCTTTGTTTTGGGTGTTTTTTTTTAGTGTTGGTGTATTTATTTATCATCACACTGGAGGGTCAACATTGGATGTTTGACTGCACTTGAACTTTCACCTTCTCCAGCTCCTTCCTTTTTCAGGGGGCTCTGAACCTAACCCCCATATCTGTAACACCGCGTAgaacccctctcccccctctgggGCTCTCCCTGgaccttcccatctctctctgctgcttGAGGACAGAGACAGCCCCACCAGGAGAGGGGTTGTTAGGTAGGAAGACACCCCCCTCCCAAAGGTGAGAGGGGGGGGAAGATGGCAGCTCTCGCCAGCTCTCTCATCAGACAGAAACGGGCGGTCAAGGACGACGGACAAAACCGACCTGTAGCCAACAAAAGGAAGCCCTGTCCTAAGAGCAACAAGTCTCTGTGCCAGAAACAGATCTTAGTCCTTATCTCTAAAGTACGGCTATGTGGGGGTCGAAAAGGTCGAAACGAAAAGAGACCGGAGCCCCAGTTGAAAGGCATCGTGACCAGGCTGTACAGTCAGCACGGATACTACCTGCAGATGCAGCCGGATGGCACCATGGATGGCACAAGGGACGAAGGCAGCTCcttctCACAGTTCAACTTGATTCCTGTGGGTCTGAGGATCGTGGCGATCCAGGGGGCAAAGACAGGGCTCTACCTGGGCATGAACAGCGATGGGTACCTCTACACCTCTGAACACTTCACTCCAGAGTGTAAGTTCAAGGAGAGTGTGTTTGAGAACTACTACGTGACGTACTCCTCCATGCTCTACCGCCAGAACCAGTCGGGCCGCTCCTGGTATATCGGTATCAACCGCGACGGACAGGTTATGAAGGGCAACCGGGTGAAGAAGACGAAGGGAGCCGCACACTTCCTGCCTAAAGTTATTGAAGGTTGGTCACATGCCCTCCAAGCTATGACGAATGTTTGAGAGGAACAAATAAGACAGGGATATATCAGAAACATATTAAGTTATCATAGATGTCATAGATGTGCACTGGACACTCAACCGTTTCTCTCTTCTGCTCCACAGTTGCCATGTACAAGGAGCCATCGCTACACGAACTAGTCAATGaacagaaagaaaaagagaaggaaagagataaAGACAGCCCTGCTCGGAAGACAGTGAAGACGTCAGAAGAACGTCATGAAATAACATTCTCCATCAAGAACTGCAGGAAAGAGAAAAAAGCTCCCAAGGCTGACGCCTCGTAGCACAGGGGAcctaggggaggggagggggagcagTGACACTGAGAACTCAATGGGGACTCAATCACCCATGATGCGTTGGGCTGGCTGGAGGAATGACCCTCATGGGCTCCCTTTACCAGAAGTGCACTGGGCTGCACCATGCTGACGGGTCAGGGGTCAACAGCTCATCAGCAGCTCACCAGGTCTGGTTCTGGGAGGGTTTCCTCTCACCtgtcaccagagagagagagagagatggaccagGGACCGAGTCAGCATCACCACCCTTCCACCCTGTCAAtcacctctacccctcctctggtACACTCACTACCAAAAGCACAGCCTGTGTCATACCTCTTTAATTGACCTACTGCCCTCCATCACCTGTCTCAATTTTCAGAAATCACCTACCCTCGCCCACACACAGTCATTTCTAATCCGTGTATTTTGATGTATGTGCGtgcgattgtgtgtgtgtgtatgttggagAAAAAGTGTGTAACACTAATCACTTCATGTCACCATAACCGCCATGCGTGGGTCCACTCTTCTAAGTAATGGAAATCACCATGGTGAAAGTGTCGCTATGCCTGGCCTCCACCATCTGCCCACCTGCAAATCTCACACCCCACAGGCGGACGTGGGCCATCAAAATGATGCTTTATTGGACAACATCTGGGGGATCTATTTATATTTGATAGTAGGCCTGTCTGTTGAACCGCAGTCTGCCAATCACTTTCAAAAATGCCAAATCTTCTGCTGAAAGAGAAAAGTCAAGCCAGCTCTTTTTGGGGGATCAGAGATATCTACAGGCTACAGGATAACCTTTTTCAGTGACCAGCCTTTTCTAGCTCACTCTTTCAAAGTCCATTTCTCCTTTGATCAATCACAATGAGGAAATACATGGAGGGAACTGAAGAAGTTTATCATATTAAATCATGAGGATGATGTAAAGGATGATAatgaggatgatgaggatgaggataATTACAATGGTTACAGTGATTGTGGTGATATTGATGATTCAACTGCCGCGTAACCTTGCAATAATCTCACAGGCAAAATAACGAGACAGAAATGTCAGGGTATCCCATTATCTGAAGTTGATAGCCATTTGCCCTTCTGGAGCCATGAAAGCACCATGTCCAAATTACTATTAGAACCCTGACTGGGACATGACTGCCATGTCTGGCCCACATAACATTAGCCTGACAGAGATGATTTCAGATTGGGCTCAGCAGGCTGATTCTGAGCATGTGAGAGAGTGATGGAGCTAAATGCCCTCTGGGCCCAATGTTATTATGATGCAACTCTTTGAAGGTTATTTCCTGGGGATTTTATGGAATACAGACAAAATTGCTTAAGTTATTCgcttaaatgtatgtaaaaaaaattaaCATGTCTCTGCAATATTTGTACAGGTTTGAGTCTCTGTCAGAGCTGGGCTGTGTTAAAAAAAGGAAGTACGGCATTTTATACAAGTGAGGGAGATAGTGACAGTGGTTATGAATGTGCATGCTTAAAATACTCCCAATTGCTAGCCTCCAAAACTCACCTTGTGGTGCTCATAATTCACTAAACTATTTCAGATAAATGGTAAGGATTGGACCTGTTAAATCTGATTAAATTCTCTGTCACCTGAAAGGTAGTGCTAGTGACCTCTGAGTGTATCCTTTGCTTGGCAACTGTTGTCGACATGAAGCAGAGTTTAAAGCTGACATCAAAGTCTGAGGAGGCTCTTAGCTGGAGCACAATAGATATATGGGGCTTTCTGGATGAGTTTTTATAAGACACAGCTGGAGCACCTACTTGCTATTCTAAAGACATCTCACTGCTTATCCCCTCACCAGAGTTATCAAATCACCACAGAGGAATCCACTCGCAAATATGGATTTCTTTGTGTGCGTGGCTGTTTGTGATTGTGTTCTTCTCCCAGTGTATGGATGTTTGTGGGAATATGTGAGTTTATTTTGGGAGTGCATAGTGCACGTATCCATGTTTGTGCaagtgtctgtttctgtgtgtgtgtatctgtgtgttgagTGGGAGGGGACTTCTACAatgtccttcatactggacatgGGGCACTGTGAGGGGTGTCTTAGTGATGTCCTTCTCTGTGGAGATGATGTTTGGGTGACAAATGGCCACCTTTCAAACCCAGCACTGGCACTGCATTGTTATTGGCCTGAGAGTGCTGAAGGAAGCAATGGGCAATAGCATCTGAAACAAACCATGAACATAAAATTACAACATACACAGGGACATCCTGGTGTACAGAAGGCTGATTTTCTAAGCATGGGGATATATGAAGTAAAATGCCCAAAGGCATTGCTGCGTAGCTTGTTCCTGCCATGGCGGCTGTGCTGTCAGAGTGAGATGGCAGGGGTGTTCTGTGTGACCAGCTCCTGTCCTGTCTAGTGGGTCACTGAGAAGGGATGGCAACACAAGTGAGCTTATTATTTTCGTCCCTTACAGAGCCCCTCTGTAAGAAACAGGCAATAGCAGTGGACTGCCTGTAAATATGTTACACAACATTACAGAAGATGAGGGAAAACCCAGAGAAGGAAAATACATAACAaatgaaaatctaatcaaattttattggtcacatacagtacacgtgtttagcagatgt

Function

NR:

description
fibroblast growth factor 11-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990358.1 True 4315 mRNA 0.46 4 42650285 42707718

Neighbor

gene id symbol gene type direction distance location
LOC110533934 LOC106603209 coding downstream 33738 42608587 ~ 42616547 (-)
LOC110534922 LOC106603221 coding downstream 57174 42589581 ~ 42593111 (-)
LOC110533933 NA coding downstream 66977 42574773 ~ 42583308 (-)
LOC118966777 LOC106603212 coding downstream 97012 42544611 ~ 42553273 (-)
LOC110534921 NA coding downstream 296592 42345716 ~ 42353693 (-)
LOC110533936 LOC106603206 coding upstream 104869 42812587 ~ 42828697 (-)
LOC110533115 LOC105024620 coding upstream 145680 42853398 ~ 42859770 (-)
LOC110533116 LOC106603218 coding upstream 155497 42863215 ~ 42866115 (-)
LOC110533943 LOC106603199 coding upstream 326278 43033996 ~ 43038340 (-)
LOC110533944 LOC106603198 coding upstream 339937 43047655 ~ 43056228 (-)
G890899 NA non-coding downstream 294 42645447 ~ 42649991 (-)
G890852 NA non-coding downstream 11375 42638708 ~ 42638910 (-)
G890815 NA non-coding downstream 20186 42629803 ~ 42630099 (-)
G890846 NA non-coding downstream 22386 42627685 ~ 42627899 (-)
G890843 NA non-coding downstream 25377 42624695 ~ 42624908 (-)
G891338 NA non-coding upstream 144360 42852078 ~ 42852558 (-)
G891339 NA non-coding upstream 145084 42852802 ~ 42853366 (-)
G891343 NA non-coding upstream 159081 42866799 ~ 42869388 (-)
G891356 NA non-coding upstream 175535 42883253 ~ 42886001 (-)
G891384 NA non-coding upstream 219782 42927500 ~ 42927709 (-)
G890403 NA other downstream 572338 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 660484 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 665868 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2102918 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2756582 39843126 ~ 39893728 (-)
LOC110533946 mpp1 other upstream 351292 43057611 ~ 43070230 (-)
LOC110533954 LOC106603192 other upstream 485964 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 975856 43681449 ~ 43686604 (-)
G892965 NA other upstream 1002767 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1491678 44199178 ~ 44209264 (-)

Expression


Co-expression Network