LOC110533936 (LOC106603206)


Basic Information

Item Value
gene id LOC110533936
gene name LOC106603206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42812587 ~ 42828697 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618526.2
GGGCCGAACCCCCCTCGTTACATGTGCTGCAGCGAGGGGTACTTGCTCCGGTGTGCACGCGGCATTTCTTTGCGCTCGGAACAATGGACAAGGATACAGGTGGAGAAAATATAAACGAATTTCGAGAGAATTTCATATAGGCTGCTGGAGTGTAGGCCTACAAAATAGATAATTTGGTCAcggatgtgttttttttttttttactgtgtatATTACACATTTACTTTGTTTAGCAATGCATTCTAAAAATGTTGGACCATTTTGCGAATGTCTTCCATTTCAGGGCTGGTGGCGGTACTGCTGACGGTACTCCAGTGGGCAGGGCGAGGCCTCCCTTCTCCTGTCAGGCCCATCTGTGACCCCCGCGTTCTGGACCGCTTCATCATGGAGGCCCGCGACACAGAGACCGCTCTGCGAGGTTGCAAGGCAGGGTGTGGCGTGACAGGCACCTTTGTGGTTCCACTGACCAACGTTGACTTTGTGGTATTGGAGACAAAGGATactgaggagcaggctctGGAGGTCCAGTCGGGGCTGTTTCTGTTCGGCCAGGCCCTGGGTGCTGTGAGGGAGTCAGTGAGCCGTGCTGCCGTAAAGAGCCTCATCGACAACAACAAGAGCAACATCCACAGCCTGGGCCAGGTGCTGCGCAGCCTCCACATCAAGgacctgtccctctctccagtgCCAGCAGTAGGTGACTCGGCGACCAGGAAGGTGTCGTCCCTATCCGAGCTGCTCCGTGTCCACACCAACTTCCTACGAGGGAAGGTTCGCCTGCTGCTCACCAACGCACCTGCCTGTCAACAGAACAGCACGTGATTGGAGCTTTCCCGGAAGACAGAGGCTGTGATTGGACCGTTGTTTAGAGAGAGGATGAGGTCATTGGACTTCTGCTGAAATCTCTGAATGGACTTCCAAGTATGGAATGTGTAGACAAGGTCGTTGTTGACTGGATAGAAACTGGTGGGAAAGTCAGTTGATGTGGGTGGAGCTGATGAGAAACCATGAACGAGTGAGAGAGGAAAAAAGGTCACTTCTACAACTCATTGACCTCATCGGTTCCTAGTACTACCTGTCAGTACCACAATGAGCTCCGATGCATGCAGCGGGAATAAGCCACAGACAGTACccgctgggcacagacgtcaattcaatgtctattccatgttggttcaacttattttcattgaaatgacgtggaaacaacattgattcaaccagtttgtgcctaGTGGGTACAGATCATATGAGAAGATGATATATAAAGTCCTAAATCCAATGATTTcgatttttcattttatttatacattgtcttaaaatgtgtttttgtataaCTTTTGTGTTATAAATCTCTATTTTCATATACGAGTGTGTACTTTGAAGTCTTTGAACCATATGTTATGATTGATGCTCAGGTTTAACATACTGTAGTCAGTGGTTTGTGTGTTCATGTAATATGCTTGTCAGTACTGTTGTAATTCAGACAATGTATTAGTCACTTCTCACTGTGTGCTCTCTGCACTCGGACTGTCTGTGTGGCCCTCCCTCCGACTTACCCTGTCTTTGGGGTCAGAGTAGACATTGTAATTTCACCACCAGGCAGCACACACAGCTCTCTGGCCTAACAAGCAGAGCACTGAGTCTGAGAATTGAGATCAGTTCCTAGTGGAGACCGTTCTGGactctgctgccctctgctggatAGACCTTGGCATCGTTGCCCTACTTCTGCCCTGGTTATACAAAGAACAGAAACCGGCTCTGGCTCTAAAAATATCATCAAGAAATCATCTCATTATGTGTATATAGACCTAGTCATTTTCACAAAAAAACGAAACAAAAGAACACCAATCAAAGAAGATCAGTAATGTCAACATGGGTAATCATTAATCAGATTAGCAACCACTCACAGATTAGCGATGATAAATCATTGGATATTGTGTGTTAAAATATAGGGAGGCAAATATGATCATTTGTTTAAGGATATCTTTTTAATGTTCTCCAGTTCAGACACACAACATACAGTGTGTCATAGCCTCTATATGAAATGTTAACGTCATTCTTTAAACCCGTTCGTTACGCTTCCTTACAGTGTCTCAATCCTCCAGTAGGTTACGGATTCCAGACTAAATGAAAACAGACACAAACAGGTGCAAGTCTTTTTCGGCAACCCAGCGCGAACCTTGGAAAAGTAGAGATTTGCATCTttgcaatgtttttttgtttgtaacaTTGAGCCAACGCCAGACTTAGTGTCACCGTGTAAACAGGTGAGAGTGTGCTTCCAGTCTGTTGGCTGTCATATCCCCGGTTTCCAAATTTCAGTCATATTTTTTAAAATAGAAAAATACTGCCttttctttcttctttttttgGAAACATGGGCATCTCAAATGGACAGCAAACAGGTGAGCTGATATTCCAGAAAATGACTTAAACAGTGTGCATGGCAGACATTATAGTAAAGGATAGCAAAGCAACCACAACCATCAGAGTCTGAAACAATACTGAAAGAGTACTGACTGAAGGTGTTGACAacatactgtacctgctctaagcTATTCGGTAATACTATGTCACTTCTCAGGACAGTAAGTGTCACTAACAATTACCAACAGCACCACCATCAAGATTCAAGTTCCCTTGTTTTGTAGGTTTGGGTTGAGCAcagtttcaaaccatgcctatctCTACCATTATCACTGCTTTCCTCTACCATTATCactgccttcctctacctccatcattaTCAATGCATATCTACCATTATCCctgccttcctctacctctaccattaTCACTGCTTTCCTCTACCATTATCACTGCCTTTCACTACCTCCATCATTATCAATGCATATCTACCATTATCcctgccttcctctacctccatcattaTCACTGCATATCTACCATTATCcctgccttcctctacctccatTATCACTGCTTTCCTCTACCATTATCACTGCCTTCCTCTACCTACATCATGATCACTGCATATCTACCATTATCActgccttcctctacctctaccattaTCAATGCCTTCCTCTACCATTAACcctgccttcctctacctccatcattaTCACGGCATATCTACCATTATCCCTGCCTTCCTCTACCATTATCACTGCCTTCCTCTACCATTATCcctgccttcctctacctccatTATCactgccttcctctacctccatcattaTCACTGCATATCTACCATTATCactgccttcctctacctccatcattaTCACTGCCTTCCTCTACCATTATCACttccttcctctacctctaccattaTCACTGCCTATCTACCATTATCCCTGCCTTCCTCTACCATTATCcctgccttcctctacctccatTATCactgccttcctctacctccatcattaTCACTGCTTTCCTCTACCATTATCCCTGCCTTCCTCTACCATTATCACttccttcctctacctctaccattaTCACTGCCTATCTACCATTGTCACTGCCTTTCtttccttcagtctctctccctatcgctctccctttttctttctctctgtatccacATTTTCTCTCTAAATCTGCTATCTCTGCAGCTCTTACCATTGGCCACTTAACAGATGCAAAATAACTCCTCTTAAATGAATTGTCATTCCAGACAAAAGCTGTCGTCGTGATTGATGTGGCAGTTGACAAAATGTGCAAGTAATGCCGACCGCCCCCAGAACCCCACCCACGTCCAGTATGTCCTTCCTACCCTAGAGAAACCTGAGCCATATCCCTGTCCCCACTGCTATTTATGTTGAACTCAACCATGCTAGGATTTTAGATGTAGTTTTCATTCACAGATCATTCATGTATGTTAATAACTGTCTATATGTGCCCATAACTTGTTGCACTTTGACCTTGAAAATCTAAGATATGAAAGAAAATCAAACAACAAGAGCTCAAATCAGCCGTCTGAACTTGCACCTGATTTGTCCCTTCACTCATAAACCAAACCATAAACATAATATGTACAAATACCACTTTGTTCTCTTACACTTTAACATTTTTTTACAGTTTGTTTTCTATGTGTCTTTTGTTCTTTTTCTGAGTCCCGGTTCTCTGTCCAGTCCCCTGTGATGGACCCCAGTCTATAACCCCGGAGTGTGATCATCATCATCCCAAAACAAGACAGGAAACAAAACAGGAAAAACATCCCACtaggtgtgttgtttgtgttacATGTGAGTAATGTTTATCAAATGTTTTTCGACTCAAGTTTTAGAATGTATCCTCTGTGCACCGGCGACATGTCAGGTGCCTGCTGATGATTAGTCTCTCCATTGCCATTGTTGTTTTCAACGTCAATGCTTTCCTAGCGTCGTCTCAACTTCGGTAACAGTTTTGTTCCTCACGAATGTCCAGAGTTTGACGTGTCCCTGTGTTCAGTTGTGCAGTTGAAAGATCTGAAACGTGCGTACAAGGTTTTTTTTTCCACCTTTGACCTACAGTATGTCAGTCTGACCCCCCTTCATACCCCCTGCCCCTCAACAACA

Function

NR:

description
erythropoietin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618526.2 True 4535 mRNA 0.44 5 42812587 42828697

Neighbor

gene id symbol gene type direction distance location
LOC110533935 LOC106603208 coding downstream 104869 42650285 ~ 42707718 (-)
LOC110533934 LOC106603209 coding downstream 196040 42608587 ~ 42616547 (-)
LOC110534922 LOC106603221 coding downstream 219476 42589581 ~ 42593111 (-)
LOC110533933 NA coding downstream 229279 42574773 ~ 42583308 (-)
LOC118966777 LOC106603212 coding downstream 259314 42544611 ~ 42553273 (-)
LOC110533115 LOC105024620 coding upstream 24701 42853398 ~ 42859770 (-)
LOC110533116 LOC106603218 coding upstream 34518 42863215 ~ 42866115 (-)
LOC110533943 LOC106603199 coding upstream 205299 43033996 ~ 43038340 (-)
LOC110533944 LOC106603198 coding upstream 218958 43047655 ~ 43056228 (-)
LOC110533946 mpp1 coding upstream 228914 43057611 ~ 43070230 (-)
G890906 NA non-coding downstream 151415 42660834 ~ 42661172 (-)
G890905 NA non-coding downstream 152086 42660302 ~ 42660501 (-)
G890903 NA non-coding downstream 153592 42658791 ~ 42658995 (-)
G890900 NA non-coding downstream 157166 42655197 ~ 42655421 (-)
G890899 NA non-coding downstream 162596 42645447 ~ 42649991 (-)
G891338 NA non-coding upstream 23381 42852078 ~ 42852558 (-)
G891339 NA non-coding upstream 24105 42852802 ~ 42853366 (-)
G891343 NA non-coding upstream 38102 42866799 ~ 42869388 (-)
G891356 NA non-coding upstream 54556 42883253 ~ 42886001 (-)
G891384 NA non-coding upstream 98803 42927500 ~ 42927709 (-)
G890403 NA other downstream 734640 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 822786 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 828170 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2265220 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 2918884 39843126 ~ 39893728 (-)
LOC110533954 LOC106603192 other upstream 364985 43183815 ~ 43248006 (-)
LOC110533962 LOC106603031 other upstream 854877 43681449 ~ 43686604 (-)
G892965 NA other upstream 881788 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1370699 44199178 ~ 44209264 (-)

Expression


Co-expression Network