LOC110533939 (LOC106603204)


Basic Information

Item Value
gene id LOC110533939
gene name LOC106603204
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 42887815 ~ 42923475 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990360.1
CCATAATGGCGAAAGGATGATATACATTATGTGGGAAGTTGTTCCAATTCGTGTTATACTGATTTAGAGGGCATGTTTCATTTGGGTGGTGATAATAGTAAAGGGATCTCCCAGAGCTACACTCTGGAACACAAGTAGTATTGCATAGCATGGGCTACTGCACTCCATCCCTATACCTAGCTACTCTATCCGTGTGCAGCATAGTACGAGGTTGAGAGAGAAGGATGCAACGAACATAAAGCAGTATAGTGAACATTAGAGACCTCTCAGGGAACTGGCTTTGATCAAAACGAGTTAATCGAGGTGCAATATGTTTAATATGGCAATATTCAGTGACTGCCTGTCCTTTTTGAAGTTTGACCTAAGTTTGACTTGATCTTTTTTAATGCCAAGATTGTGCCATAATAGCGGAAAGGATAAATGACGGATAGAATGGGCATTTTTTTGTGTGCGCTAAGACGCAGAAGGCATAACAATGGAGAAAGCGGGAAAATCCTTAATGCGTTAAGCATTCAAGAGCACAGCGAATAGGCGATCAACTTGGGTCAGCGAATGTTTTCTTATACAACATTGGACTAGGCTGCATGAGTCGGACATTTGAGCAAGCAAACCAGTGCATCTGCGTGGCAAGgTTCCAGGATGACAGGGGGTATGTGTTGTACCCCCAGATAGGGGATCGTTTGGACCTGATCTGCCCAGCCTCCAACCCCCCAGGCCCCCGCTCCCCCAGTGAGTATGAGTACTACAAGCTGTACCTGGTGTCCATGCGCGAGCAGGCCGACCGCTGTGAGGTGATGGGCGCGCCCAACCTGCTGCTCACCTGTGACAAGCCCAACAGTGACATGCGCTTCACCATCAAGTTCCAGGAGTTCTCCCCCAACCTGTGGGGACACGAGTTCAAGACCCTGACGGACTACTACATAATAGcTACCTCTGATGGGACGAGGCAGGGGCTGGACAGCAcgagaggaggagtgtgtgtgacaCGAGGGATGAAGGTGATTCTCAAAGTGGGACAGAATGCATATGGCCTCCCACCCAAACCCAAACCAGACTCAAACCGCTTCCACCCCAAAGGGAACGGTACCACGCCCAAGGCTGGTGGAGAGGGCGGGGGGAACAACCCTTTACCTTCCTCTAACGTGGCGGTGATCACTGGAGCGGCAGGGGGCGGAGCCTTCCTCCTCATCGTGACGTCTGtcgtctgtgtggtgtgttaccGCTGGCGACAGAACAAGCACTCTGAGACCCATCACcccaccctgaccctgaccaccCTAACCCCCAAGAGGGGCAGCAACAACGGGGCCGGCTCCTCCGCCGGAGGAAACAACGGCTCGGAGCCCAGTGACATCATCATCCCGCTGCGGACTTCAGACCAGGCTTACTGCCCGCACTACGAGAAGGTGAGCGGGGACTACGGTCACCCCGTCTACATCGTCCAGGAGATGCCCCCCCAGAGCCCAGCCAACATCTACTACAAAGTATGAGGGAGACATCTAGACGGCCCAGCTGGCATAGACGCAGTATCCACAAATAGACTGCTGTTTTCAACGTAGAAATCCAACTGTCCCTCTAGCTCCCTCCACACCCTTatcctcccacctccctctctatGACTGACTGTCGGGATGGCTACCCTCACCCTCCTGCCCTATGGACTGTACTGTACAGTGGCCTGCCACTGtggatggatggggggggggggggtgtattggtGGGGGTAGGACCTCTTCCCTGCTTTGAACCCTGTGATTGGGTCCATGAGGCCTGGGCATGAGGGCCATTAAACTGGTGGACTCACAGTGGCAGCGGCTCAGTGTCGCCTCTCACTCAAAGTGAGAGCTGACACTAGATATGAAATGTCAAAACTTTTCAAAtggttagtctgtgtgtgtgtgtatatttgcgTGAGTGAACGTGTTTTTGTGTGCGTGCGCACGTACGCACAAGCAGTACGTCTGCTCGTGTGTGGTGCGTGATAACTTTTGTTTTCGGGGTATGTCAGTCTTAAAACCAAAACCACACAAGCAAATATCAAAGCAAGATTTCTACCCACGGTCATCCTTTACAGATGACATAATATAATGATTTCCTAACTCGTTTGTAGATATTTCAGTTCAGATTTCTGTTAGGCACTGTTTTCTTGTCAGTGTTGTATGTTCTCTGTTTTGGAGTCTAGATGAGATCTAGGTACTGGTATTTAGGATTGTGTTTTGTGTTCGTCTTCGAAATGAAGGATCTACTCTTCCTTTATCCCATCCTCTCACTCACTCTACAATGCCTTAGCATTGAAATAGTTCACTTTTCTGTATATAAAGTTtcacagaggaaggaggagaacaGCACAAAGAGGTGTACTCAAGAAGAGGAAGAGTATTGGCAACGTGTTTGAACAGACGAACCCACAAACACTGTGATTCTcccatactgtacacacagctacacacacacacatccacacacagctACAGAAACCTTTTAACCCCACTGTGTTGTTTATGTTGCTCCTCTGTGACTGGTGAAAGTGTCTTTTTTCGAGACAAATGATCTGTTTGGTTTTGTGGCAGCTGCAGTCTCTTTTCATTCCCCACAATGCATTGGTAGCTGATGACCAACGGTTGGCTGGCTGAGGAGAGGAATGCAGCAAGTAAAGAAAGTgaaaaggtcagaggtcatcgTTGAAATGCCACAGACGACAGTCAACATATATAGCACCATGGTGGAGTCCATGCCAATGTGACTTAGAACATCCTTTGTCTACGGGACCGTTTCAACACAATGTGCTATGGAGGAAATGTCTTACACGCTGGCTTTACAAACTCAGTCCTCGAGTCTCAGGACCACATCTCATACACAGAAATAGATGTATTGTTTGATGTTTTCATACAAACTAATGGATTCCTATTGCCGTTTTTATGTAGTGTGATGACTTCTAGGATGTTGAGGTCTGTAGTCAGAGTGTTGGAGGAAGTGACGGAGTGATCGGAAACATCACAGATCAGTCCAGCTCCGGCTGGGTCTGACACCTCTCTGGGACATTTCATCACTCTGGGTCTGACACCTGTCTGGGTCTGACACCTGTCTGGGTCTGACACCTGTCTGGGTCTGACACCTCTCTGGGACATTTCATCACTCTGGGACATTCTGGACCTCATACTTACATCACAACTCTTCGACAACATTGGACTCTGATTGGACAACAAAGCAACAGCACACTACCTGAGACATGGCGGCAGACGCCTCTGATAAGAAAGTGATTTTCTGGGTGCTAGAATAAACATGTCCTGTCCTTGTGTACCCTTCAAGACATTCTGCTTTTAGTTCTCTACCAGGGACCAGCTGGACTTAAGGCCAGTGTAATTCTGTGTCCCATTCTACCGAATTCTGTGTACCATTTGCCATAGTGTTTCATTTGTCTTTCTCAACTACTATTTTCCACTCAGTCATTTTGTGCCAATAACCTCATCCAGAGGAGGGGGCCCTGCTTTTCAGAACTGAGGAGAGATGGATCAGGTGTTGGTGAGACAAGGGATGAGACAATGGTTTGATGTGGTAGGCAGATGGATAAGGAGACCTTTTTGAGATCGATGAGACTGAATGTTGAGACTTTGCAGGACACTATAAGATGGTTTATGTTGCCTCCCCAGGGTCTCTGCTCTCCTGTCCCTTCCCAATCATCTCTTTCCAGACGTAcattccagtttttttttttggggggggggggggggggggaattacaTAAAAACCTAAGTA
>XM_021618527.2
TAATGGCGAAAGGATGATATACATTATGTGGGAAGTTGTTCCAATTCGTGTTATACTGATTTAGAGGGCATGTTTCATTTGGGTGGTGATAATAGTAAAGGGATCTCCCAGAGCTACACTCTGGAACACAAGTAGTATTGCATAGCATGGGCTACTGCACTCCATCCCTATACCTAGCTACTCTATCCGTGTGCAGCATAGTACGAGGTTGAGAGAGAAGGATGCAACGAACATAAAGCAGTATAGTGAACATTAGAGACCTCTCAGGGAACTGGCTTTGATCAAAACGAGTTAATCGAGGTGCAATATGTTTAATATGGCAATATTCAGTGACTGCCTGTCCTTTTTGAAGTTTGACCTAAGTTTGACTTGATCTTTTTTAATGCCAAGATTGTGCCATAATAGCGGAAAGGATAAATGACGGATAGAATGGGCATTTTTTTGTGTGCGCTAAGACGCAGAAGGCATAACAATGGAGAAAGCGGGAAAATCCTTAATGCGTTAAGCATTCAAGAGCACAGCGAATAGGCGATCAACTTGGGTCAGCGAATGTTTTCTTATACAACATTGGACTAGGCTGCATGAGTCGGACATTTGAGCAAGCAAACCAGTGCATCTGCGTGGCAAGGTAGGCAATGGCACTTTGCCAATGAAGATAAACGTCCGCTATCCAAAATTACGCTTCCAAAGTGGTAGAATGCCGTTACTCCGATATTCGCGACCTTCAACGCATTTGCATTTGTCTGGAGAGGTGACATTAGGAGAGCTGATAGATATAGGCTTTGTCATGCAATAATGTCCATAATTGCTGGACACATTTTAAACCAGAAAGCTGAATATTGCCACTAATGCACTTTAAACTCAAGAGGTTGACACATTCTCTCTAACCACATTCCAACTACTCTGAATGTTGTTGTCTGATTGATTTTTGGGACGTTTTTTCTTATGCGGTTTCCGAAGTCGCAAAATAGCTGTGCGCTTCCAGGGATTTCGTGAACTTCGTTCGCAGTCTCCAAACGATTCTTTGTCTGAATCGATTCCCCGTCACTTTTTGGGGTAAAATGGCAGGAGAGAGCCGAGGAGCAGGGATGGCTTTGGCGTTTTGGGACGGCTGTAATGGCTTGGGATTTATTTTTATCTTTCTTGTGGATCTACTGGGAATAGCTGCAGGTAACATGGAACCTATTTACTGGAATACGTTGAACAAGAGgTTCCAGGATGACAGGGGGTATGTGTTGTACCCCCAGATAGGGGATCGTTTGGACCTGATCTGCCCAGCCTCCAACCCCCCAGGCCCCCGCTCCCCCAGTGAGTATGAGTACTACAAGCTGTACCTGGTGTCCATGCGCGAGCAGGCCGACCGCTGTGAGGTGATGGGCGCGCCCAACCTGCTGCTCACCTGTGACAAGCCCAACAGTGACATGCGCTTCACCATCAAGTTCCAGGAGTTCTCCCCCAACCTGTGGGGACACGAGTTCAAGACCCTGACGGACTACTACATAATAGcTACCTCTGATGGGACGAGGCAGGGGCTGGACAGCAcgagaggaggagtgtgtgtgacaCGAGGGATGAAGGTGATTCTCAAAGTGGGACAGAATGCATATGGCCTCCCACCCAAACCCAAACCAGACTCAAACCGCTTCCACCCCAAAGGGAACGGTACCACGCCCAAGGCTGGTGGAGAGGGCGGGGGGAACAACCCTTTACCTTCCTCTAACGTGGCGGTGATCACTGGAGCGGCAGGGGGCGGAGCCTTCCTCCTCATCGTGACGTCTGtcgtctgtgtggtgtgttaccGCTGGCGACAGAACAAGCACTCTGAGACCCATCACcccaccctgaccctgaccaccCTAACCCCCAAGAGGGGCAGCAACAACGGGGCCGGCTCCTCCGCCGGAGGAAACAACGGCTCGGAGCCCAGTGACATCATCATCCCGCTGCGGACTTCAGACCAGGCTTACTGCCCGCACTACGAGAAGGTGAGCGGGGACTACGGTCACCCCGTCTACATCGTCCAGGAGATGCCCCCCCAGAGCCCAGCCAACATCTACTACAAAGTATGAGGGAGACATCTAGACGGCCCAGCTGGCATAGACGCAGTATCCACAAATAGACTGCTGTTTTCAACGTAGAAATCCAACTGTCCCTCTAGCTCCCTCCACACCCTTatcctcccacctccctctctatGACTGACTGTCGGGATGGCTACCCTCACCCTCCTGCCCTATGGACTGTACTGTACAGTGGCCTGCCACTGtggatggatggggggggggggggtgtattggtGGGGGTAGGACCTCTTCCCTGCTTTGAACCCTGTGATTGGGTCCATGAGGCCTGGGCATGAGGGCCATTAAACTGGTGGACTCACAGTGGCAGCGGCTCAGTGTCGCCTCTCACTCAAAGTGAGAGCTGACACTAGATATGAAATGTCAAAACTTTTCAAAtggttagtctgtgtgtgtgtgtatatttgcgTGAGTGAACGTGTTTTTGTGTGCGTGCGCACGTACGCACAAGCAGTACGTCTGCTCGTGTGTGGTGCGTGATAACTTTTGTTTTCGGGGTATGTCAGTCTTAAAACCAAAACCACACAAGCAAATATCAAAGCAAGATTTCTACCCACGGTCATCCTTTACAGATGACATAATATAATGATTTCCTAACTCGTTTGTAGATATTTCAGTTCAGATTTCTGTTAGGCACTGTTTTCTTGTCAGTGTTGTATGTTCTCTGTTTTGGAGTCTAGATGAGATCTAGGTACTGGTATTTAGGATTGTGTTTTGTGTTCGTCTTCGAAATGAAGGATCTACTCTTCCTTTATCCCATCCTCTCACTCACTCTACAATGCCTTAGCATTGAAATAGTTCACTTTTCTGTATATAAAGTTtcacagaggaaggaggagaacaGCACAAAGAGGTGTACTCAAGAAGAGGAAGAGTATTGGCAACGTGTTTGAACAGACGAACCCACAAACACTGTGATTCTcccatactgtacacacagctacacacacacacatccacacacagctACAGAAACCTTTTAACCCCACTGTGTTGTTTATGTTGCTCCTCTGTGACTGGTGAAAGTGTCTTTTTTCGAGACAAATGATCTGTTTGGTTTTGTGGCAGCTGCAGTCTCTTTTCATTCCCCACAATGCATTGGTAGCTGATGACCAACGGTTGGCTGGCTGAGGAGAGGAATGCAGCAAGTAAAGAAAGTgaaaaggtcagaggtcatcgTTGAAATGCCACAGACGACAGTCAACATATATAGCACCATGGTGGAGTCCATGCCAATGTGACTTAGAACATCCTTTGTCTACGGGACCGTTTCAACACAATGTGCTATGGAGGAAATGTCTTACACGCTGGCTTTACAAACTCAGTCCTCGAGTCTCAGGACCACATCTCATACACAGAAATAGATGTATTGTTTGATGTTTTCATACAAACTAATGGATTCCTATTGCCGTTTTTATGTAGTGTGATGACTTCTAGGATGTTGAGGTCTGTAGTCAGAGTGTTGGAGGAAGTGACGGAGTGATCGGAAACATCACAGATCAGTCCAGCTCCGGCTGGGTCTGACACCTCTCTGGGACATTTCATCACTCTGGGTCTGACACCTGTCTGGGTCTGACACCTGTCTGGGTCTGACACCTGTCTGGGTCTGACACCTCTCTGGGACATTTCATCACTCTGGGACATTCTGGACCTCATACTTACATCACAACTCTTCGACAACATTGGACTCTGATTGGACAACAAAGCAACAGCACACTACCTGAGACATGGCGGCAGACGCCTCTGATAAGAAAGTGATTTTCTGGGTGCTAGAATAAACATGTCCTGTCCTTGTGTACCCTTCAAGACATTCTGCTTTTAGTTCTCTACCAGGGACCAGCTGGACTTAAGGCCAGTGTAATTCTGTGTCCCATTCTACCGAATTCTGTGTACCATTTGCCATAGTGTTTCATTTGTCTTTCTCAACTACTATTTTCCACTCAGTCATTTTGTGCCAATAACCTCATCCAGAGGAGGGGGCCCTGCTTTTCAGAACTGAGGAGAGATGGATCAGGTGTTGGTGAGACAAGGGATGAGACAATGGTTTGATGTGGTAGGCAGATGGATAAGGAGACCTTTTTGAGATCGATGAGACTGAATGTTGAGACTTTGCAGGACACTATAAGATGGTTTATGTTGCCTCCCCAGGGTCTCTGCTCTCCTGTCCCTTCCCAATCATCTCTTTCCAGACGTAcattccagtttttttttttggggggggggggggggggggaattacaTAAAAACCTAAGTA

Function

NR:

description
ephrin-B3-like

GO:

id name namespace
GO:0021654 rhombomere boundary formation biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05463 EFNB; ephrin-B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990360.1 False 3756 mRNA 0.49 5 42887815 42923475
XM_021618527.2 True 4335 mRNA 0.48 5 42887818 42923475

Neighbor

gene id symbol gene type direction distance location
LOC110533937 LOC106603205 coding upstream 2165 42866768 ~ 42887262 (+)
LOC110533114 LOC106603207 coding upstream 76769 42740165 ~ 42815146 (+)
LOC118966778 LOC106563172 coding upstream 284083 42601412 ~ 42603732 (+)
LOC110533931 LOC106603211 coding upstream 344958 42538416 ~ 42542857 (+)
LOC118937078 NA coding upstream 345830 42541915 ~ 42541985 (+)
LOC118966779 NA coding downstream 28163 42951638 ~ 42956223 (+)
kdm6bb LOC106603203 coding downstream 62237 42985712 ~ 43008622 (+)
tmem88a LOC106603200 coding downstream 86925 43010400 ~ 43013688 (+)
LOC110533942 NA coding downstream 91233 43014708 ~ 43028438 (+)
LOC118937073 NA coding downstream 161424 43084899 ~ 43085032 (+)
G891055 NA non-coding upstream 35066 42852207 ~ 42852749 (+)
G890950 NA non-coding upstream 165377 42720439 ~ 42722438 (+)
G890898 NA non-coding upstream 180206 42706768 ~ 42707609 (+)
G891093 NA non-coding downstream 3206 42926681 ~ 42926884 (+)
G891142 NA non-coding downstream 69567 42993042 ~ 42993613 (+)
G891157 LOC106603199 non-coding downstream 110522 43033997 ~ 43036826 (+)
G891171 NA non-coding downstream 139619 43063094 ~ 43070131 (+)
G890228 NA other upstream 734037 42078215 ~ 42154093 (+)
G889906 LOC106603262 other upstream 1170523 41712327 ~ 41717292 (+)
LOC110533845 LOC106603305 other upstream 4075676 38755443 ~ 38815017 (+)
G883966 NA other upstream 6036662 36849646 ~ 36851153 (+)
LOC110533788 NA other upstream 6086230 36799376 ~ 36801589 (+)
G891133 NA other downstream 59207 42982682 ~ 43109676 (+)
G891188 NA other downstream 173245 43096720 ~ 43097617 (+)
G891741 NA other downstream 610841 43534316 ~ 43600230 (+)
G891740 LOC106603170 other downstream 618991 43542466 ~ 43555517 (+)
G891847 NA other downstream 789070 43712545 ~ 43713082 (+)

Expression


Co-expression Network