LOC110533946 (mpp1)


Basic Information

Item Value
gene id LOC110533946
gene name mpp1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43057611 ~ 43070230 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618535.2
AACCTGCGGCTCCCTGGATGGCGAATGACGTCATCAAGCCATCTTTGTTCTCCTTACACAAGCGTGTTTATGACTTGTTCATTACAGTAGTGACACAGAGGAGACCAGCGGTAGCTATTATACAAATACATTGGCGAGGTGCGGCATAAAATAAGCGCACGAACTGAGAAAAAGGGAACATTTACAACGGGGGAATAAAATCAACTTGGTGGTAAACATTATCACTCCCTCCTATTGAAAACGCCAGAAGAGTGAATCGactgagagggagcgagagggaaaaAGAGCGCTGAAGGCAACCCACTCAACAGCCACTTATTAGGCAAATACATTCCAGTCGGACTTGCGTAGCCTGCATTAATAAACCACCATAAGAAATGTCTGCCCCAGCTGCCGCCGGCGCCCCCGCAGATGGAGCGGCGCCCCCTCCAAACCTCACCAGCAACCGCCGCCTGCAACAGACACAGGCTCAGGTGGATGAGGTGGTGGATATCATGCGTGTAAACGTGGATAAGGTTCTGGAGCGTGATCAGAAACTGTCAGAGCTAGATGATCGGGCCGATGCCCTGCAGGCTGGAGCCTCACAGTTCGAGACCAGTGCTGCAAAACTCAAGAACAAGTACTGGTGGAAGAACGCCAAGATGATGATTATCCTGGGGCTGATATGTGCGATTGTCCTCATCGTCATCATCGtctacttCAGCACTTAAGATGAGTGGCTCCTACCCCAGTCTGCACACGAGACTGCCCGCTTCCTTGCAACAGAAAACCCttcaaatcaacaacaaaaaatgtccaCTGGTGATGAATTAATTAAATTGCTCCCCAAATAGTCTCAATATGACCCTGCCCAGAACCCCCTGAACCCTCTCAGCCCCCGCTTCCACCGCCTCACCTCTGGACCCCTGTCAATTTTCGTCCTGTGAGTCTGTGGCCCTGCCTTCTTTGTAAATACTTCCTGCTTTTCTAATCCGTCATTCATACTCAGAACCCAATACTTGTTGTGATTGTTACCGATGACAACGACAGAAAAGAAAATGATGACCCTGGCGATAAttgttatataccagatatgaaatatatatatagttcttTGTAGGAATGTTATTCTGATATAATGTTTTTGTaggttgtgtgtgggtgtgcgttttgtattttttaatttttgTATTAATTTTACTTATGCTTCAGATTTGAACTACTGCCTATTAATCAGAGTGCGTATATCTTGCacgttctctctcactgtctctgcctgtctctggcTTTCTCTGTCTTGCTCTGTCTCCCACAGAGTATAGGTGCATCTTTGCACAGTGGAGTTTGTCTCCTTTAACCGAGGTACTTAATCGATATTCCCATCCTGTTCTCCATcttttgcttctctctctcttcttctctttctctctcctacacCCTTTAGCCATACTGTCTCTTTagaatccttccttccttctctttctttctgtctctctctccgatCATGTACCTTCTCTTTATTAACTGCCAATAGAATTGGACCAATGTCTGTAGATGTTTTTTATTTGACTTATTTAGTGTCTTATTTCGAGAACATTCCTCCATTGCTGTCTAGTAAAAATGCTGTCAGTGTAGCACATGTATGTGTAagtatctttaaaaaaatatatatgaagtgATCATAAATATTATCGCCGATATCAATCTAACAAGCCAGAGTTGGAAAAATAACAATAttgatatataaaaaaaaatgaggGCTTGCTAGTTTTTGTTTGGTggatcaggatttgaacctgttTCATTTTTTCATTTCAGCAACATAACATTGCATAACGTTGCTGTGACAATACACCAAATCCTACAGAGATGTCATTACTAACAAATAGCTAAAAAGGATACTTACACTAAGGGATCAAAAATGCGGACACAGTAAAGCCTTAGTCTCTGATCAAAACGTATCACATTGATGATTTTTACGGTCAAAAAATTCCCATACACTCTTTATTTTGTGTAGGGGGAGAGGCTGACTGAAAAGGGGGAGGCGGTGTGAAATGCACAAAGAGCCTTGTTTTTGATGGCGCTGTCTGGCTGGTCAACAGCATGACCGCTGTCTGGCTGGTCAACAGCATGACCGGCCGAGAGAGAACCTCATTCAGCAAAACCTCACCTATTGATGAGCACATACACAGACAACTCAGCCTTATTTGAAAGTGAAGGTAGAAGTATGAAGATGGATGAAGCAACTGGCATGGACATACAGTAGTAGAAAATGATGATCTAGAGAAAGGGACTAACTTGGCCCATGGGGGCCAGCTTCGTTGACGGATTAAGAGTTGCTGTAAACCTTAAGTGAACTTTCCAAGAAACGTCATGAAAAGCAGTCATAGTATACACACAAGCTAGAGGGAGCGTTTGCTAGTGCActggttctctctctatctttcttacATTTTCTCCCTAGTTACtgtctttttcttttttaaaCATAGTAATAGCGTATATTTTATATAGtatatttgtgtgtttgtttgaagtaGATAGGTAAAGAGGAGACTGAACTCAATCAGGACTTCACTAACTGCTATGAGCAGGGAGctcctctctacctctgtgtgttgtgtgtgtacgtgcatttTTGTGGTTCAGCTCTGTAAGTTAAACACTGCCAAGCAACTAGGGAGAAGCTTTTGTTTTCTGCCATTTTCTCTTTGGTGCCCTTACTGATTTGTTCTTAGTGGATTGCTCTTGCATGGTCACCTCTTGTCCCATGCCCCTGTATAGGCCTAACTGTTTCTAGTGCTATCTGTTTCTAGCAcatgaggttggtggcaccttaattggggaggacgggctcgtggtaatgcctggagcggaatgagtggaacggtatcaagtacatcaaacacatggtttgatgccatacCATTCGcaccgttccagccattattataagccgtcctcccctcagcagcttccacAGGTTTCTAGTGCTATCTATCTGCCAGCTCTGTTAGTCTACTTTATGAGTAGTAGCAGAAAGACTACTGGACCTGTGGATAATACAGTTGTTCCCATAGGTTAGGCCACCTTAACATGACCTCTTGGCCTCTGTCCCACCATTCCCACCTATTTCTCCTCATTGATTCAGGATCCTACACTGgggatgtgtgtgttgttgaaGCTCTGCCCGTCCTGGGAATATCCCTAGTTTATCCTGACAGATTTGGCCGCTTAGACATCAGCGGTGAGGGCAAGCTGTTTCCATGACAACTAAATTAGATGAGCAGAGTGGGGAGGTAACAGATCAGCCCACTGACTGTCTTTCAGATTTTCCATATTTGTGCTCAAGGAATATTCCTATGCTACATGTACACTGGCAGAGCCCCCCCAACCATATGTtacaaataacacacacatatatttccttgctctctctctctctctctttctcattctattgttatctccctctctttaaCTATCTCTATCAGACACATGTAAAAGGAAATGGCCTTAGCACATTATCTCCCAGCAAAGCCTATCTCCCAGCCCCACCCTTCCTCTTTATTCTACCTAACTAGAGCAAAACTAATTCAGAGGAAAATTACCAAAGACTAGATGTTCTTGCTGCCAACTGCCATCAAAAACAAGTAGAGGGACACAACATATTTTACCCAAGTCACTTTAACAGCAATCCTTACTCCCCTGTTTTTGAAAGCGTACCCTTAACCCAAAAATACCTAAAGTCACATGACCGTTTAACCCTTTCAGATCTTATTCAATAGCTCATGTTGGCAAATAGATGATGACATAATGTGCTATTTGAAGATATGCAAGAGAAACAAAACCTACAAAAAGACGTGCTTTCAGCCCCCTTCCATAAGACTACTTTAATCTGTACCGAGTCTTTAGACACAAGCTCCTATAACTAATAATAGCACAACTCCTCTCCTTGTGTGTGTCGCTGTCGTGCTGACAACAATTTACAGATGAAATAAAATATTAACTTTATCTATAGctgttaaacaaaacaaacaaaacatgcataaaaaaagtatttattgtctggtgttgtagtgtgggGGTGTATTTGGGGGAAGGGGGGTCCTATTTCTTCAGGTCGGAGATTAGAGCGGTTCATCAAAATCTACTGGGTGAGGTCAAGAAAATCCACGAAAGCTGTATAAAAATTGGAATAGCAAATAATTCAAATTTATTTTGAAGGTGACAAAAAAAAAGAGTGCCGCCTTCGAGTTATTATCATCTCATGACACCACTGGTCGGGGTAGGACTCCTGTGCTGTTCACAAATCCAAGGGTTGTCCTTAAAGTGCTCAGCAAATTTAGATTAAAAAAAATTTGACAAATTGATGTTATGTGAGTGCTCATTTTCTGTTGCTTTTTTTGTTCCGCAAGGATGGGTGTGCGCAACTTTTAATGTCCTGGcacttttttttgttgtattcTGGGTGTATTTTGGGGGGCTAGGATATGATGTGGTGGAGAATATTGTGTTATTGCTAACACTAAGAGGTGTTCAGTGACTTCAACATAGGAGGGAACCTTTTGAGGCACTGATCCTTCACAGGTCGGCTATAAAATCACAATGCTCTCACCAATAcacattacatttatttttatttttggaccAAATGTTTCCTTTGTATTTTGCATAAAGTTAGTAATAACTTTGGTATGATGTCATTGGCTTAGGTTGTGTGTACATCGGAAGAGGAGGAAAGATTAAATAAAGACGTGTTCTCTATGTTAATCGTATCAACCAAGTCAAGAAGAAGGGATGTTACTGGGAAAAACAAATGTCCAGAAAGCTTAGAATGGTGTACAATTCAAGACAGATTCCTCTGTTGTCACTATGTTTATATTTTGTTTGAACTTCATTTTGTGGAGGGAATATTATTTTGTTCTTTTGGGACCGGTGTTGGGGAGGTTTACAGTCCACATTACCTCTGTTTGCCTGGTCTTTCAGGAGGGAATAGACTGGGGGATCATGGGTAATGTGTTTGGTTCAgtctgttttatttgatttattgatttatttattgtgtttttgttttgaatGGGATTGGATATTAAAAACAAGGTGGATTACAATGTACCACAGGATACCAATTGAAAATCAGAAGTACATAAAAAACAATTGTAGTGTAAATCGATCAATGTCTTGTTATATTGATGAACAtcatggaaatatatatatatattggaaaAACAATAATTCTGATGACCTGTGTTTATtgttcccagtgtgtgtgtgtgcgtgtttaaaAACAATGATGACATTAAATAAAATCTATGCTAAAATGGG
>TU1014179
ACTTGTTCATTACAGTAGTGACACAGAGGAGACCAGCGGTAGCTATTATACAAATACATTGGCGAGGTGCGGCATAAAATAAGCGCACGAACTGAGAAAAAGGGAACATTTACAACGGGGGAATAAAATCAACTTGGTGGTAAACATTATCACTCCCTCCTATTGAAAACGCCAGAAGAGTGAATCGactgagagggagcgagagggaaaaAGAGCGCTGAAGGCAACCCACTCAACAGCCACTTATTAGGCAAATACATTCCAGTCGGACTTGCGTAGCCTGCATTAATAAACCACCATAAGAAATGTCTGCCCCAGCTGCCGCCGGCGCCCCCGCAGATGGAGCGGCGCCCCCTCCAAACCTCACCAGCAACCGCCGCCTGCAACAGACACAGGCTCAGGTGGATGAGGTGGTGGATATCATGCGTGTAAACGTGGATAAGGTTCTGGAGCGTGATCAGAAACTGTCAGAGCTAGATGATCGGGCCGATGCCCTGCAGGCTGGAGCCTCACAGTTCGAGACCAGTGCTGCAAAACTCAAGAACAAGTACTGGTGGAAGAACGCCAAGATGATGATTATCCTGGGGCTGATATGTGCGATTGTCCTCATCGTCATCATCGtctacttCAGCACTTAAGATGAGTGGCTCCTACCCCAGTCTGCACACGAGACTGCCCGCTTCCTTGCAACAGAAAACCCttcaaatcaacaacaaaaaatgtccaCTGGTGATGAATTAATTAAATTGCTCCCCAAATAGTCTCAATATGACCCTGCCCAGAACCCCCTGAACCCTCTCAGCCCCCGCTTCCACCGCCTCACCTCTGGACCCCTGTCAATTTTCGTCCTGTGAGTCTGTGGCCCTGCCTTCTTTGTAAATACTTCCTGCTTTTCTAATCCGTCATTCATACTCAGAACCCAATACTTGTTGTGATTGTTACCGATGACAACGACAGAAAAGAAAATGATGACCCTGGCGATAAttgttatataccagatatgaaatatatatatagttcttTGTAGGAATGTTATTCTGATATAATGTTTTTGTaggttgtgtgtgggtgtgcgttttgtattttttaatttttgTATTAATTTTACTTATGCTTCAGATTTGAACTACTGCCTATTAATCAGAGTGCGTATATCTTGCacgttctctctcactgtctctgcctgtctctggcTTTCTCTGTCTTGCTCTGTCTCCCACAGAGTATAGGTGCATCTTTGCACAGTGGAGTTTGTCTCCTTTAACCGAGGTACTTAATCGATATTCCCATCCTGTTCTCCATcttttgcttctctctctcttcttctctttctctctcctacacCCTTTAGCCATACTGTCTCTTTagaatccttccttccttctctttctttctgtctctctctccgatCATGTACCTTCTCTTTATTAACTGCCAATAGAATTGGACCAATGTCTGTAGATGTTTTTTATTTGACTTATTTAGTGTCTTATTTCGAGAACATTCCTCCATTGCTGTCTAGTAAAAATGCTGTCAGTGTAGCACATGTATGTGTAagtatctttaaaaaaatatatatgaagtgATCATAAATATTATCGCCGATATCAATCTAACAAGCCAGAGTTGGAAAAATAACAATAttgatatataaaaaaaaatgaggGCTTGCTAGTTTTTGTTTGGTggatcaggatttgaacctgttTCATTTTTTCATTTCAGCAACATAACATTGCATAACGTTGCTGTGACAATACACCAAATCCTACAGAGATGTCATTACTAACAAATAGCTAAAAAGGATACTTACACTAAGGGATCAAAAATGCGGACACAGTAAAGCCTTAGTCTCTGATCAAAACGTATCACATTGATGATTTTTACGGTCAAAAAATTCCCATACACTCTTTATTTTGTGTAGGGGGAGAGGCTGACTGAAAAGGGGGAGGCGGTGTGAAATGCACAAAGAGCCTTGTTTTTGATGGCGCTGTCTGGCTGGTCAACAGCATGACCGCTGTCTGGCTGGTCAACAGCATGACCGGCCGAGAGAGAACCTCATTCAGCAAAACCTCACCTATTGATGAGCACATACACAGACAACTCAGCCTTATTTGAAAGTGAAGGTAGAAGTATGAAGATGGATGAAGCAACTGGCATGGACATACAGTAGTAGAAAATGATGATCTAGAGAAAGGGACTAACTTGGCCCATGGGGGCCAGCTTCGTTGACGGATTAAGAGTTGCTGTAAACCTTAAGTGAACTTTCCAAGAAACGTCATGAAAAGCAGTCATAGTATACACACAAGCTAGAGGGAGCGTTTGCTAGTGCActggttctctctctatctttcttacATTTTCTCCCTAGTTACtgtctttttcttttttaaaCATAGTAATAGCGTATATTTTATATAGtatatttgtgtgtttgtttgaagtaGATAGGTAAAGAGGAGACTGAACTCAATCAGGACTTCACTAACTGCTATGAGCAGGGAGctcctctctacctctgtgtgttgtgtgtgtacgtgcatttTTGTGGTTCAGCTCTGTAAGTTAAACACTGCCAAGCAACTAGGGAGAAGCTTTTGTTTTCTGCCATTTTCTCTTTGGTGCCCTTACTGATTTGTTCTTAGTGGATTGCTCTTGCATGGTCACCTCTTGTCCCATGCCCCTGTATAGGCCTAACTGTTTCTAGTGCTATCTGTTTCTAGCAcatgaggttggtggcaccttaattggggaggacgggctcgtggtaatgcctggagcggaatgagtggaacggtatcaagtacatcaaacacatggtttgatgccatacCATTCGcaccgttccagccattattataagccgtcctcccctcagcagcttccacAGGTTTCTAGTGCTATCTATCTGCCAGCTCTGTTAGTCTACTTTATGAGTAGTAGCAGAAAGACTACTGGACCTGTGGATAATACAGTTGTTCCCATAGGTTAGGCCACCTTAACATGACCTCTTGGCCTCTGTCCCACCATTCCCACCTATTTCTCCTCATTGATTCAGGATCCTACACTGgggatgtgtgtgttgttgaaGCTCTGCCCGTCCTGGGAATATCCCTAGTTTATCCTGACAGATTTGGCCGCTTAGACATCAGCGGTGAGGGCAAGCTGTTTCCATGACAACTAAATTAGATGAGCAGAGTGGGGAGGTAACAGATCAGCCCACTGACTGTCTTTCAGATTTTCCATATTTGTGCTCAAGGAATATTCCTATGCTACATGTACACTGGCAGAGCCCCCCCAACCATATGTtacaaataacacacacatatatttccttgctctctctctctctctctttctcattctattgttatctccctctctttaaCTATCTCTATCAGACACATGTAAAAGGAAATGGCCTTAGCACATTATCTCCCAGCAAAGCCTATCTCCCAGCCCCACCCTTCCTCTTTATTCTACCTAACTAGAGCAAAACTAATTCAGAGGAAAATTACCAAAGACTAGATGTTCTTGCTGCCAACTGCCATCAAAAACAAGTAGAGGGACACAACATATTTTACCCAAGTCACTTTAACAGCAATCCTTACTCCCCTGTTTTTGAAAGCGTACCCTTAACCCAAAAATACCTAAAGTCACATGACCGTTTAACCCTTTCAGATCTTATTCAATAGCTCATGTTGGCAAATAGATGATGACATAATGTGCTATTTGAAGATATGCAAGAGAAACAAAACCTACAAAAAGACGTGCTTTCAGCCCCCTTCCATAAGACTACTTTAATCTGTACCGAGTCTTTAGACACAAGCTCCTAT

Function

symbol description
mpp1 Is expressed in macrophage; pancreas primordium; pancreatic bud; ventral mesenchyme; and yolk syncytial layer. Orthologous to human MPP1 (membrane palmitoylated protein 1).

NR:

description
PREDICTED: vesicle-associated membrane protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618535.2 False 5307 mRNA 0.41 5 43057611 43070230
TU1014179 True 3836 TUCP 0.43 5 43059010 43070158

Neighbor

gene id symbol gene type direction distance location
LOC110533944 LOC106603198 coding downstream 1383 43047655 ~ 43056228 (-)
LOC110533943 LOC106603199 coding downstream 19271 43033996 ~ 43038340 (-)
LOC110533116 LOC106603218 coding downstream 191496 42863215 ~ 42866115 (-)
LOC110533115 LOC105024620 coding downstream 197841 42853398 ~ 42859770 (-)
LOC110533936 LOC106603206 coding downstream 228914 42812587 ~ 42828697 (-)
LOC110533948 LOC106603196 coding upstream 18056 43088286 ~ 43095752 (-)
LOC110533951 mpp1 coding upstream 48338 43118568 ~ 43140706 (-)
LOC110533953 LOC106603193 coding upstream 99495 43169725 ~ 43174015 (-)
LOC110533954 LOC106603192 coding upstream 113585 43183815 ~ 43248006 (-)
LOC110533956 LOC106603169 coding upstream 464050 43534280 ~ 43542281 (-)
G891440 NA non-coding downstream 37171 43014701 ~ 43020440 (-)
G891376 LOC106603203 non-coding downstream 49012 43004237 ~ 43008599 (-)
G891393 NA non-coding downstream 114346 42942981 ~ 42943265 (-)
G891387 NA non-coding downstream 127406 42929939 ~ 42930205 (-)
G891384 NA non-coding downstream 129902 42927500 ~ 42927709 (-)
G891469 NA non-coding upstream 5298 43075528 ~ 43075844 (-)
G891483 LOC106603194 non-coding upstream 34324 43104554 ~ 43105552 (-)
G891425 NA non-coding upstream 37816 43108046 ~ 43111579 (-)
G891488 NA non-coding upstream 71608 43141838 ~ 43142068 (-)
G891490 NA non-coding upstream 73693 43143923 ~ 43144798 (-)
G890403 NA other downstream 979664 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 1067810 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 1073194 41982701 ~ 41984417 (-)
LOC110533878 LOC106603271 other downstream 2510244 40496714 ~ 40547393 (-)
ksr1a LOC106603285 other downstream 3163908 39843126 ~ 39893728 (-)
LOC110533962 LOC106603031 other upstream 613344 43681449 ~ 43686604 (-)
G892965 NA other upstream 640255 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 1129166 44199178 ~ 44209264 (-)
LOC110534000 frmd8 other upstream 1235989 44303605 ~ 44308978 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G424458 NA unknown CI01000304 null 10153446 ~ 10164330 (-)