LOC110533959 (LOC106603167)


Basic Information

Item Value
gene id LOC110533959
gene name LOC106603167
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43615873 ~ 43653352 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618556.2
TGTCTAGCAAGAAGTTCGGATGAAAGTAAACATCTGGTGCAATGTTAAGCTACATGGTGCGAAGCGTAATGTACTATTCGTGCTAAAGCGTATGGGTCCTGCGTACTCAAGCTCCCGACTCCCACACAAAAAGGATTCTCTGTGCTGCTGGGGGTGCAGTGCAGTCAGTAGCTGTCACAGCTCCACATCTGGCTACTGGCTGTCTAGTTAactagctaattagctagctaactgtatcAAAGTCTGTGGTCTCTCTGTTGGGTAGCTAGTGAATTAGTTCCTGTATTATTCGAGAGAAAGATTGCTTTGTGAAATCACTTCGGTGGTTATCGTGTTCCGAAGAAGAGGCCTGTATTTTGGACAATATCTGAGATCAATCGAAACATTTGAAGTGGTCCAGTGCTGTCTTCTAAAAGAAAACACTTAAGGATTTTGCGTAAGGCACgtatttttttaaaggcagaGTTAGGGTGACATTGCGGTCTCTTTATATCGAATATAACGTCGCCCGACAAAAAAGGGAAAGTGGGGCATTGTCCGTCGTACGTATTAACGCAGTGGGATTTTTACGTCTGGTCCGCGTTTCCACCCACCCCTCCCGCGTTGACGGTGATGGGTCGGAAGCGGTGTGTCGGTGCAGATTGTTCCAAGATGGCGGCTGGGTGCTGCGGGGTGAAGAAGCAGAAGCTGTCGGGATCCCCCGGGTCGGGGGGTCCTGGCGGGGTGGGGGCGGGTAACGGGGTGGTAGGGACCGGACATTGTGGCTCGGACTTGGGGATTGGTTCCTCCTCGACTGTGGTGGCAGGGAACATGAATCGAGTGAACGGCCTGGGGGGTCCtgggggtagtagtagtagcaccaaCGCATTGTCCCCAGCCCCAGGAGGCTACAACTCAACTGGCATCTCTCCGAATCTTAGCCCGGGATGTGGTTCGGGAAGTGGAGGCAGGAAGATGGTTGTTTCAGCGGAGATGTGCTGCTTCTGTTTCGACGTGCTTTATTGCCACCTGTATGGATACCAACCTCCCCGAACACCCAGGTTTACAAACGATCCCTACCCGCTGTTCGTCACATGGAAAATAGGCAGAGACAAGCGGTTGAGGGGATGTATAGGTACATTTTCTGCCATGAACCTGCACTCAGGACTCAGGGAGTACACCCTTACCAGTGCCCTTAAAGACAGCCGTTTTCCTCCCATGACGAGGGACGAGCTGCCACGCCTCTTCTGCTCAGTGTCTCTGCTCACCAACTTCGAGGACGTCGGTGATTACCTTGACTGGGAGGTGGGTGTTCATGGCATTAGGATAGAGTTTTTCAATGAAAAAGGATCAAAGCGCACCGCCACCTATCTACCAGAGGTCGCAAAAGAGCAAGGATGGGACCACATTCAGACCATAGATTCCTTACTACGAAAGGGAGGCTACAAAGCTCCCATCACAAATGACTTCAGGAAGACCATTAAGTTGACCAGgTACCGTAGCGAGAAGATGACGATGAGCTATGCGGAGTACATCGCCCACCGCCAGCACCATCACTATCAGAACGGCATCGGGCATCCTCTACCACCATACAACCATTATTCCTGACAGCGAGCCGCATGACCAATCACTGAACCTCTCTGCGGACCTTTTCCCAGGAGAGCCCGCCCCCTCCTGGTCTAGCTATCTCTACTACTGTACCATTTTATGATGATAGTTTCCGTTGCCATGCTGACGCTCTCCCAGACGTTGACGTGGCAACGGGTGGCAAAATAAGCATAAATTGATAATGATGAGAAAAAACAAACCTTTTTTTCCCTTTTTATCCTCCTATTGATTTAGTTTTTGCAGCATATATATTGATATCTATAACCCCTTTCGTTCATATTTTTGACAAGTAAACGAATACTAGATTTTCTTGAACTTTGATTATTTTCAAAGAATCCTAATCAGGTTTTTGATTCTGTGGATGGAAGCAAGTCATATATGGTGGACTAGTCTTGCATAATGGTATATGCTCATATTTTGTGTAGGCTTTTCTACAGTGTTCCCTTCTATtaggaaaatgtgtttttctgttgAATCCTTTCTTAGTAGCCTGACTGACATTGTGCGTATCATGTAGCAAGCCATCAGCAGTTCTGGAAGGTTGCATCATTTCCTCAATTTTGCGATTCCTCTCAAAAAAGTATTGACTGTTAAGGTTGGTTTGGCCTTTGTAAACCGTTGTAGTGATGTAATTGAGTAGATGTTGGGACGTGTATACCCAAGATTTTACATTGTGAGGTTGTGATGCCACACAAACAATATTAGCTGGTCTTTATTGCGTTACCCTACAAACCTGTTTGCTCTTCTGTGTGTGGTTAGCCGTTTGTAAGGTGCACATCTGACAGGACATTGAAACTGACACATTAAATTAGGAATAGGATCATGTCAAAATATTTCCCACAATGCTTGACAGAGCCTTTCATTTCCACCGGAGTGTTCATGGTGTTTTTGATAAACACTTCTAGACttcattttttaatttattttttaaattgaacctttatttaacttggcaagtcagttaagaacaaattcttatttacaatgactgcctacacgggccaattgtgcgctgccctatggggactcccaatcatggccggttgtgatacagcctggatttgaaccagggcgTATaatgatgcctcaagcactgagatgcagtggcttagaccgctgcgccactctgaaACTTGAATTGAATTTGTCCGGCTACAGTTGTTATTTTCCCCCTCTCTTTAAAACTTGAGAAATGTATGGAGGAAGCCATTTTAGCTTCAAATTAGGTTCTGTTCTTTGTCATTTTGAATCGGGCGAGGAATGAATGTGATCTACAGGGCTGGAGGATGTGGTTGGGTGGGAGAGTTGACTGCAGAGTACAGATAAATAATGATCCAAGTCATTGACCTCTGAGAAAAAGGCCTTCGTCCTGTTATTCCATGCCAGTTGGTTTGAGAGGGAAAACCAATGAATGAGACTTGAGTCTAGTGACGGGCACATGCTAAAACTACTACAAGCCATATTCTCTTTTTAATGCATGCTTTGTAAGAGTGGTCGTCTTTTGCTGTTTGCTTTTCTCCCCTCTAATAAGTAACTTCTCCGTGTTTACTTCCTCTACGAGTCAACTTTATTCTGGTGGCTTTGGTCCCAAAAGTTGTGTTTCCCCTCCGATTGTGCTCTGTGCTTGGTCCTGGTTAGGAATCTGGGCCTGTGAGACATTCTCTGGCCTTCCTCTAGTTACTCTGTGGACATGGGTTAGCGTCAAGGTTTGAACTCCTTTGTCCTGTTTGTGGCCTCCTCACCTCCAATGTTTACATCCGCATATGTTACATGCTTGATGACTGCCCGGTTGCCATAGATGTGCACTTTCATGTGCTCTCGTCAAACGTTAGGAGCTGCTGTGGAGGCTACTGGACTGAGTAGCTAGCTATAGTTGAACCCCTGACTCTGATCGTCGTCGGTTAAGTTGTTCAAATCACCCCTCCGTTATTTCCTCTTCATGACATGCTGCTGGTGAGGTGCTTGCTGGTTTCAGGACAAGTTACTCCCCATCTCTGTGCCACTAGAAACCATGCATAGGCTGTTGGTCTGTCTTGTCAGCTGGTTTGCAGCAGCTTCTGCCTGAGTTGGTGGGAACCGATGCAGAGGGAAACTAGTAAAGGGTGGATCAAGCTGCATTTAATCAAACTCTACATAAAGAGCCAGGGCTTTTAAAGGAGCAGGGAAGACatttcccctccccctcctagTATTCTTCATTGTCAGTCACATCCACGTCCAGTAGTTGGTATGTTTTAACAAGTGTCGTTGAGGGTTATCTCGTGACCTCTGTGTAGTGTACAGGATTTGATTTGTGTTTTTTGTGGTGACTGACAGTTTTGAAGGGTGcttgtaaaaaaataacaaaataaacatattttcgTAACAGCCTTTACCAACTGACAGTAGGGTAAatcattttatttcatttttatatGCAAAATGTTAAGGGCTTTTGGCACTCCATCCACAGTAACCTGAAATGACCCAGATTTCAGTTGTGTTGCCTTAAGGAATGATTAAATAAATATGGACCGGTAAAATGGTGCCCTGAGTGTTCCTCTGTCCCGTACTGTTGtctaaccctgacctcaacctacaGGGCAGTGAAGGTGAACCGGATTCACCCATTCACCCTCGGATAGACACATTATCGTAGTGGAGGCAGATGGGAACCTTTTGTGGTCAGACAGGCTACTTCATTAATATAGCCTAGTGTAGAAGTGGTTCAGATGAGCTCATCTCACCTGTTTACTGTGGTTCCCTGCTCAGAGATTGGATGGCCTTTCCATCATATCCTCTTGGGGTCAGGGAACTGATGCCTCAGACCATGCTGCTTAGTAATATTGACAGGACAAATTGACCTACTTAAAGAGATATTTTGCCCTTGTAGTTTGTCACAAAAACAGTTTTCAGAGAACTGTGGGAAAAGCTATCCTTGCTGCTGAACAGTCAGGTACCCATTTTCTGGTCCATTAAATACAGCACAACCTGAACTTTTTCTGGTCATGCTGCAAAACCAAGTCCACCGCTGTCTTTTACATGCTTGCTGATTTATATGTATACACAAATGCAATCCATTCtgttgcatgtgtgtatgtgtataaaaCATGCAGAATGGTTAAATCCACGACATGCTTGATCTACGGTGTAGAGACTCATAACTCgttaaaaaaaagagaaaataaataaaatggtgcTATTGGACCTCGTGTTGGGGCGGTCGCGGGTTTCGTGACTGGTCATGCGGACTCATCGATCATATCCAACTTATTATCCTTGATATATGCAGATCTGTTCAACAGGTGTTTTTTCCCTACCAGTGTAAGTCAACACCCTGCAGGTTTGAAAGGACAAGAAGTCCCAACtaacccccctcctcccttctctaccCCCAACTCCCCACCCCTGCCTCATGGCCTTGGGGTTGAAGGTGATATCTGGTTCAGTAGATGGTGTCATCAGAAGGGAACATTCTCTCCTGTGCTGGGACAGTAAAGAGTGGGAGTGAACAGGGCTGTCACCCCTGACACTCCACCGTAGGCCCTTTCCTTGCCCAGCCCACGACTGGATGTTCCAACAACACTTTATGTTTTACCTCTGTGTTAAATCGTTGTTACAGCTGTCCTGTACCCAATACTCATCCATGGGGTTGATTAACAGCTTCAAGGAAAGGTTCTGACTGAAGGCTCTCTCAACTCTGGCTCTTACGAACTGCCCCATAGGAAGTCCAGCGTTTTTAGCCTTCTTGAATATTGTCATGCATGTACAGTAAGTCTCTAACAGTGGTTTCTTTAAGCTAAAGGCCATGTTGCGACTTGGCTGGACATGAGGGTGGGTTTAACTGGCAGGTTTAGTGACAGCCGGACGAGTGCTGACGTCATCAGGATGCTCACATAATTATTGTATAATGTTTGACTGAGACCATTTGTTATCATTAATGTATATCAGAGGAgcatggtgggaggagctattggAAGATGGGCTCAATGCAATAAATGTAATGCTATCAAACATATAGAAAACACGTTTGACAATgtgcccgtcctcctatagctcctcccaccagcctcctctgaagtATGTTACTTTCACATGGAAATGACTGAaagtctttttctttttttaacctCAAGTCAAGATTCATGAATACCAGTCAAATGTGATTCTGACTGCTCATTTGCAGCACACCTCTGCCCATTGTTCATACTGACACAACTAGGATAATGTTAAAGACAGAATGTCATTTGGTTCCATACCAGGGTTATGGTTTAGTCCCAGCATTCCTTGTATGTGTATGCATATATCTTTGTTGAATGCTTAAGCTCATATAACCTTTTGTATGTTCGACCGAACCAAAGATGCCTCTGGCCACGTCCACATGCTGCTCTTCAGGCCTGGCTTCCTGTCCTTCCAAAAAACACCCCTGCAAGAGACAAAATGACTTATTTTTTCcctgtctttttctttttttgtacgATTTCTAACTTTCTTTCTTTAGCAACTGCTTATTCAATTACTTTTTTTATTCTGTTTGAAGCCTTACCAGGCATCAAGGATAGTGAAATTACCTGGTTGCACAGTTTATTTTGTCAGATTATTTTCATTATAATTTGTGCAACAAAAAATAAAACCCCATAGCGTGCCTCCTAGATTTATGGGTTTCTATGTGTTTTTTCCTAAAGACCAGCAGTTATACTTCATATATAAAAGATGAGTTTCACTTTTTTATGCCATTAAAGATGAAAAAGCCTCTTTTCTTTACTCTGGACCCAGTAGCTGCACTGGAATACAATCGCACTGATCTACAAATGAATACAACTTTTATAAGAAAATGTACtttaagaaaaaaaaacttttttgtaCATCAATtattttcaaaaaaatattttggatctAGTTTCTAAATTAATTGTGGTTTTCTATGTTCAGAAAATGTCAGACACCAAGTTGAGACATGTTGCTGTGCAGAGTGACAGTCTCTGCTGTGGTGGCATGACAGGATGTGGGGTTGCCTGGCGTAACCCCTCACAACCACCTTTTATTTCTTCTACTTTACATTTTTGGTTCACTTTCTCAACTTTAGTAACTTGAAAATGTTGATGGAATAATATGAACTGGGAAATAAACGACTTACCTTTAGAGCTAGATCCTCCTTCCCCATTGAATTGCTGTTAGTGTGATGAGACTTAATGGGCATTTATGATAGTATggcatataaaaaaaaaatacccaCCCCCAAAaattgtgggggaaaaaaaaatcatatataTTGATGGGTTATCAGTGGGTATGTGAGCAATGGCTGTGGAGACAATGTAGTTAAACATTTATTACCTTTAAATCATTTAtccaataaaaacatttaaaaccaaGTGAAAATATA

Function

NR:

description
PREDICTED: AMME syndrome candidate gene 1 protein-like

GO: NA

KEGG:

id description
K24611 AMMECR1, AMMECR1L; AMME syndrome candidate gene 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618556.2 True 6952 mRNA 0.44 6 43615873 43653352

Neighbor

gene id symbol gene type direction distance location
LOC110533957 LOC106603170 coding downstream 60272 43543161 ~ 43555601 (-)
LOC110533956 LOC106603169 coding downstream 73592 43534280 ~ 43542281 (-)
LOC110533954 LOC106603192 coding downstream 367867 43183815 ~ 43248006 (-)
LOC110533953 LOC106603193 coding downstream 441858 43169725 ~ 43174015 (-)
LOC110533951 mpp1 coding downstream 475167 43118568 ~ 43140706 (-)
LOC110533960 LOC106603166 coding upstream 6075 43659427 ~ 43676273 (-)
LOC110533961 LOC106603189 coding upstream 23249 43676601 ~ 43678032 (-)
LOC110533962 LOC106603031 coding upstream 28097 43681449 ~ 43686604 (-)
LOC110533963 NA coding upstream 37882 43691234 ~ 43694084 (-)
tmem179bb LOC106603164 coding upstream 90446 43743798 ~ 43750767 (-)
G892936 NA non-coding downstream 62 43612372 ~ 43615811 (-)
G892746 NA non-coding downstream 262967 43330795 ~ 43352906 (-)
G891534 NA non-coding downstream 414953 43199905 ~ 43200920 (-)
G891526 NA non-coding downstream 432560 43183084 ~ 43183313 (-)
G891522 NA non-coding downstream 436969 43178681 ~ 43178904 (-)
G892955 NA non-coding upstream 41712 43695064 ~ 43695404 (-)
G892956 NA non-coding upstream 42467 43695819 ~ 43696019 (-)
G892957 NA non-coding upstream 42764 43696116 ~ 43698631 (-)
G892960 NA non-coding upstream 48513 43701865 ~ 43702205 (-)
G892961 NA non-coding upstream 49023 43702375 ~ 43702719 (-)
LOC110533946 mpp1 other downstream 545715 43057611 ~ 43070230 (-)
G890403 NA other downstream 1537926 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 1626072 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 1631456 41982701 ~ 41984417 (-)
G892965 NA other upstream 57133 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 546044 44199178 ~ 44209264 (-)
LOC110534000 frmd8 other upstream 652867 44303605 ~ 44308978 (-)
G893541 NA other upstream 1115098 44768450 ~ 44769072 (-)

Expression


Co-expression Network