LOC110533962 (LOC106603031)


Basic Information

Item Value
gene id LOC110533962
gene name LOC106603031
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43681449 ~ 43686604 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618560.2
CTAGTCATTCTCATTTTAACAATTCAGATGTCAAGTTATAACGTTCTAATGAAGATGAAGTGAAGAGGCAGAACAACACCCCGTCTCTACAAACCTTCCAAACTCTGAGCAGACACCTGTTTCAGACAGGCACGCGACAATGTATCGGTCCACAAAAGGAGCATCGAAGGCTCGGAGGGACCAGATCAACGCAGAGATTCGGAACCTACAGGAACTGTTGCCCATCTCCGATACTGACAAAGCTCGACTCTCCTACCTACACATCATGTCACTTGCCTGCATGTACACCAGAAAGTCAGTATTCTTCGTTCAAGACGCTCTTCAAGACGAGACCATGGACTTCATGTCTTTTCACGAGCTCTCGGGGCTGATGCACGAATTGTCAGGTTTCATGCTACTCCTAACAAGCGACGGAAAGCTTCTGTATCTATCAGACAACGTCGTAGACCACCTCGGGCATTGTATGGTGGACCTGGTTGCCCAGAGTGACAGTGTGTATGATATCATCAATCCTATGGACCACTACGTCATGAGGAGCAACATTGCAGGTCTACCAATGACCACTACTGATACAGACAGGTTATTTCGATGTCGCTTCAATACCACAAAGTTCATCCGGCGGCAAGGTGCAGGGAACAAGTTGATGCTGGTCAGAGCTCGCTGCCTCACCCCACCTTGCCCTGTCTCTAATTACTGGACCTCCAACCCAGTATGGGTGTGTTTCTGTACCCCTCTGAAGACAAAAACGTATAACCTCACAATCGCCAAGAGTGCCCCCTTCACCCCACCCCCTGAGCACGCCTTCCTGCTTGCTTGTTTCCACTCTCAACACAACAGGGACATGAGGCTTTGGGACGCGCAGGACAGtgtgagtgtgtaccTGGGCTATGATGTGGAATCTCTACGCTCTCGCTCCTGGTACAGCCTGGTTCATCCCAGGGACCTCTCCCATGCCTCTGAACAGCACCATATCATATTAAATGAAGGAGGGGAGCGGCAGGTGGAGATGGTGTTGCAGGTGGAAACAGCAGACCACTCCTGGGTCTGGCTCTATATGGTCCTCCAGCTGAACAATGGAGAACACCCCATCAGCTGCCACAACTACATCATCAGtGAGTCAGAGGCGTGGTCAATACGCCAGCAGCTGTGTTTGGAGCAGAACCAGTTCCCTGGGTATTTGGGTTCTGGCCAGAGCCTGTCTAGTCCAGACCAGGTCTTCAGCGGCAGTGGCCTGTCTGCACATTCGTTAGACTTCAGCCATGCCACGTCTGGTGTGAGCGCTTGTGAGGAGCCCATGCAGCCATTTGGTTATGGTCCTCGGTCCAGCCTGTCATCTCTGGATGAGGAGAACTTCCCGCAGACACATGGAGGACAACACCAGTGGAAACCAAAGTCCAGCCATCTCTCTGTTGGGCCAACCACTGTGTACCCTCCTGCCTCACTGACTGATCCTGAGTCTGATATTCTGTCTCAGAGAATAACCTCTCAATCTCTAACCAATATTTCagaccctctcccctcctccctcaccgaGCCCCTTGCCCCTCTTACTATGCCCCACCCTCAACAGATTGGGGAGCTTGCATGCACTCCCCCGTATACCCCTCATCTTGAAAGTGGCAGTTTTCCTTTTGGGGAGCAACTGCAACTCAGTTTAGTTCACATCAATGCAGCTGTGTCATGCCCAATGGCCCATGAAATTATTACCTCAGCACTCAGAACACCAGCCTTCTCCCAGGCCTTCTCCTCTGATCATCCTGAGCTGTTTTTCCCAGCAGAGCCTCATAGAAAGCTGCCCCCCACCACTGATAGTTTTGGGGGAGATGAATGCTCCATCATGAGCCTGCCACAGATTATGGGGCCTTTGTATGTGGATGTTTCCCACAAGCCCTCCTGTGGCCCTTTGAATGAGCTCCTCCTTACCCCAGCGGCATCACCCACACACCCGCCCTGCTCCTTCCTCTCCAtagacagagagcaggagagggagaatgaagaCATTTCTCTCTTGGCTAAATATATTAGCTCTTTAGCTGAGGGATTTTGCTGTGACCCGCTTCTACCCGGAGTGACCCCATCCACCTTGACTTCACCCAGCCTTCAGGCCACATCCCAGAGTTTCTCTCCTCCTTGCGGAGGTGAGTGCCAGCCCTGGAGGGGGCTAGACCCGCCCCGTAGCCGAGAGGATATCTCTCTGTATGAGGAGAGTATATTACTTGAGAGCCTAATTGAGGCGCTCTCATCGTTCCCTTTGTCCCGCTCTTCatgctcctcttctccctcttcctcctctttgaACTCCTCCCCCCCTTGCTCACCACTCACTCCAGTGAGCAGGTGTAACCCCAGCCTCATCGAGGGTGAGTCTTCAATCGGTGTCAACCATTTCTGTAGCGTCCAGTCAACGCAGTGTAACTGCTTGGCAGTGGGTGGAGCTTTGATGGTCATCAGGGTGATGGATATGGAGGTGTCAGAGGAGCCTCCATCTTCACTACCATCATCAGCCATCGTTCTCACAGCCTTCCAGGAGGGTGCCTCTGCCTTGGTCCATCCGGCCCCCACCATTGGTTTGCCCAATGCCCAGTCCTTTCTGGAGGAACTGGGTGACATGGGACCTCTGTTTGAGGCAGATGCCTCTTTCACCCCGTCTTGGGGTAACAACCTGAGTTGTATCAACTCCCACTCAACCATGCATTCACAAAGTTTTCACCAAGATGGAAGCCTGCGTGACCCTGCGTTTTAAAATAAGTCTGTGACTTACTTTATTCAGTATGGCATATTGTCATATTTTAAGATGCAGCTTTTCCTGTAAAAGCTGAATGtgcaaaatgtattaaaaaaaatcttCAGAAAGGTGAAAAATAAATTCTCCTATCCATATTTCGGATACTTAAAATCCAATATTGTATAATAAGGTTTTCTGCTGATTCAGTTGTACATGCATTACTTTGAATTGATTTTATTGTTAAGTAACCTCATGAGAGGTCATTTAAAGTGCCATATTTAAATTCACTCATGGTGAGGAAGAAGGCATATTTGAGCACACAAGATCACATCGCACAAATGTATCATACCACAACAATTTTGTTTGGTTTTATCTATAAAGATGCAGTGCTTGTTTATACACTGATTTACATGTTGGTTGACTAGGGCCTTATTTTGTTGAAAGGATGCATTTAGGTTTGAAAATCATGATGGGTTGTCTTTCAGCATATGTGCTCTTCGCATACTGTGTTTGTCTGAtctatttaatatttttttttttatatgactAAAAGTGGAGTGAAAAGTGTGTATTACCAGTGTACCGATAATATATGCTGTACATTCATATATTGTACATTttctgataaaataaataaatcagaaACTGATATATCTAGTACATTAGCTAGTATATTTAATATAAGTGATGGACATTATGTGTTGTTTATAGTTGTCCATGCATTTGGATACCAATCAAAAGCAAATTAAAATCTCTG
>TU1015844
GTCTTCAGCGGCAGTGGCCTGTCTGCACATTCGTTAGACTTCAGCCATGCCACGTCTGGTGTGAGCGCTTGTGAGGAGCCCATGCAGCCATTTGGTTATGGTCCTCGGTCCAGCCTGTCATCTCTGGATGAGGAGAACTTCCCGCAGACACATGGAGGACAACACCAGTGGAAACCAAAGTCCAGCCATCTCTCTGTTGGGCCAACCACTGTGTACCCTCCTGCCTCACTGACTGATCCTGAGTCTGATATTCTGTCTCAGAGAATAACCTCTCAATCTCTAACCAATATTTCagaccctctcccctcctccctcaccgaGCCCCTTGCCCCTCTTACTATGCCCCA

Function

NR:

description
neuronal PAS domain-containing protein 4A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618560.2 False 3482 mRNA 0.48 8 43681449 43686604
TU1015844 True 347 TUCP 0.54 1 43683574 43683920

Neighbor

gene id symbol gene type direction distance location
LOC110533961 LOC106603189 coding downstream 3417 43676601 ~ 43678032 (-)
LOC110533960 LOC106603166 coding downstream 5176 43659427 ~ 43676273 (-)
LOC110533959 LOC106603167 coding downstream 28097 43615873 ~ 43653352 (-)
LOC110533957 LOC106603170 coding downstream 125848 43543161 ~ 43555601 (-)
LOC110533956 LOC106603169 coding downstream 139168 43534280 ~ 43542281 (-)
LOC110533963 NA coding upstream 4630 43691234 ~ 43694084 (-)
tmem179bb LOC106603164 coding upstream 57194 43743798 ~ 43750767 (-)
LOC110533972 LOC106603159 coding upstream 151770 43838374 ~ 43846088 (-)
LOC110533973 LOC106603156 coding upstream 207481 43894085 ~ 43898188 (-)
LOC110533974 LOC106603153 coding upstream 223298 43909902 ~ 43966849 (-)
G892936 NA non-coding downstream 65638 43612372 ~ 43615811 (-)
G892746 NA non-coding downstream 328543 43330795 ~ 43352906 (-)
G891534 NA non-coding downstream 480529 43199905 ~ 43200920 (-)
G891526 NA non-coding downstream 498136 43183084 ~ 43183313 (-)
G891522 NA non-coding downstream 502545 43178681 ~ 43178904 (-)
G892955 NA non-coding upstream 8460 43695064 ~ 43695404 (-)
G892956 NA non-coding upstream 9215 43695819 ~ 43696019 (-)
G892957 NA non-coding upstream 9512 43696116 ~ 43698631 (-)
G892960 NA non-coding upstream 15261 43701865 ~ 43702205 (-)
G892961 NA non-coding upstream 15771 43702375 ~ 43702719 (-)
LOC110533954 LOC106603192 other downstream 433814 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 611291 43057611 ~ 43070230 (-)
G890403 NA other downstream 1603502 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 1691648 41987711 ~ 41989801 (-)
G890360 LOC106603260 other downstream 1697032 41982701 ~ 41984417 (-)
G892965 NA other upstream 23881 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 512792 44199178 ~ 44209264 (-)
LOC110534000 frmd8 other upstream 619615 44303605 ~ 44308978 (-)
G893541 NA other upstream 1081846 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 1324725 45011329 ~ 45017446 (-)

Expression


Co-expression Network