LOC110533963


Basic Information

Item Value
gene id LOC110533963
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43691234 ~ 43694084 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475067.2
gttgcccttttcttgtggcaacaggtcacaaatcttgctgctctctctctctctctctctctcaggagtgCACAGATGGTTATGAGTGGGCTGTTCAGAGTCAGCACTGTAAAGAAGGCTGCCGGTGGGAGATGAAGTGTTTTAACCACTATAGTGGCTACCTGTGTCTCCCACGCTCTGCCTCTGTCATCACCGCCCCTGAACCCTCCAGCCGGTCAGTGGCCACCCTGCCTGTGGAGTCCTTCGAGGCCTTGAGAttgagtcatctgtggatctgttggggcggtatgcaaattggagtgggtccaggctgtctgagatgatggtgtgGATGAAACGAACAACATCAGTGTGATGATGGTCCAGGCCCATGCTGTGACCGGCCACGAAGAGTACAACCTGGAGCTGGTGTGTGTCAACCCCCACATGATCTATCAGACCAGCTCTGCCCTACGACTGTCTGTCTTTGTAAAACCATCTGAGGAGACAGATGGAGCAAAGAGAAGGAAACGGAActagagagtgggagacagatgTGAGATGAGAATAACTGTTAAGGGCATGAGATGGGAACATTTCTCAGACACATTACTACTATACATGCATCTTAAAGAAATCTGCCCGGGGCAAAGCAAGTTGTAAAACCATTCTTCCATAATTCTGTGAGtcaccacaaacacacatgctCATGCACACGCATGCAGACCAGTGGTGGCTGGTGACGCTTTAAATCGGAGGACGGGCTCatttgtaatggctggaatggaataaatggaacatatcaaacacgTTTTAATACTGAACGGTTTATTCCGTGCCAGACATTACTATATGTTGTCCTCGTTCgccagcctcctctgacacacgCACGCATGGTACACTGGCACACACTGGAATTTAGCCTCTGCAGTGTGCATCATATTTTCAATAGTTTCTTGCTGCACAAAAGACTAGCCAAGAGGGTCCATTATCTTGTTACCAAGGCAACTGATAAAAACATCCATTCAAAGCTACCTTTTCAACCCATGTCACACTATGTTATTTTTCTCTCCATCAGGGTCgttctcctgctctcctctcatCCTAACTGTTCTCCAGATAGTTCACTCTAAACTGTAAAGAATTAACATTGCTTGTTCCTATtctgtagtttaaaaaaaaaaaaattacaacttATGGTTGTTTTGTCATGTTACTAAAATTAAAAGAGATGAAACCAACATTTGGATGAATGATATTCCTTTTAGTTGCTGTTCCTCTTCCACCTCCCTGCTCATGTACACGCTTAACCTTTCTCTTACCTCTTCTGCTTAATTAAGGCCCAATAATGGGTTCTCTTGCTGACCatcttttctctctttcattcactCTGTCACGTTGGCTTATTTCCTTTTCAGTACAAACGCAGGTAAATGCACTCTTTCAAATCAATTGACACTGCTAATTACACTACAGTATGTGCAGTTAACATAGATTAGCATCTTACTTTAAATTGCCAAATGACCCTAACAACAGGTTTAAACGTCACCCTAGCTATTTATTTAAACATGTTTTAAATG

Function

NR:

description
PREDICTED: EGF-containing fibulin-like extracellular matrix protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475067.2 True 1559 mRNA 0.44 3 43691234 43694084

Neighbor

gene id symbol gene type direction distance location
LOC110533962 LOC106603031 coding downstream 4630 43681449 ~ 43686604 (-)
LOC110533961 LOC106603189 coding downstream 13202 43676601 ~ 43678032 (-)
LOC110533960 LOC106603166 coding downstream 14961 43659427 ~ 43676273 (-)
LOC110533959 LOC106603167 coding downstream 37882 43615873 ~ 43653352 (-)
LOC110533957 LOC106603170 coding downstream 135633 43543161 ~ 43555601 (-)
tmem179bb LOC106603164 coding upstream 49714 43743798 ~ 43750767 (-)
LOC110533972 LOC106603159 coding upstream 144290 43838374 ~ 43846088 (-)
LOC110533973 LOC106603156 coding upstream 200001 43894085 ~ 43898188 (-)
LOC110533974 LOC106603153 coding upstream 215818 43909902 ~ 43966849 (-)
LOC118966632 NA coding upstream 285750 43979834 ~ 43982382 (-)
G892936 NA non-coding downstream 75423 43612372 ~ 43615811 (-)
G892746 NA non-coding downstream 338328 43330795 ~ 43352906 (-)
G891534 NA non-coding downstream 490314 43199905 ~ 43200920 (-)
G891526 NA non-coding downstream 507921 43183084 ~ 43183313 (-)
G891522 NA non-coding downstream 512330 43178681 ~ 43178904 (-)
G892955 NA non-coding upstream 980 43695064 ~ 43695404 (-)
G892956 NA non-coding upstream 1735 43695819 ~ 43696019 (-)
G892957 NA non-coding upstream 2032 43696116 ~ 43698631 (-)
G892960 NA non-coding upstream 7781 43701865 ~ 43702205 (-)
G892961 NA non-coding upstream 8291 43702375 ~ 43702719 (-)
LOC110533954 LOC106603192 other downstream 443599 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 621076 43057611 ~ 43070230 (-)
G890403 NA other downstream 1613287 42076741 ~ 42077947 (-)
G890385 LOC100136012 other downstream 1701433 41987711 ~ 41989801 (-)
G892965 NA other upstream 16401 43710485 ~ 43710969 (-)
LOC110533117 stx5 other upstream 505312 44199178 ~ 44209264 (-)
LOC110534000 frmd8 other upstream 612135 44303605 ~ 44308978 (-)
G893541 NA other upstream 1074366 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 1317245 45011329 ~ 45017446 (-)

Expression


Co-expression Network