LOC110533964 (LOC106603165)


Basic Information

Item Value
gene id LOC110533964
gene name LOC106603165
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 43714576 ~ 43722473 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618561.2
GCGCCAATAGCAGATTCTGAGGATTTGTTTTCACATCCGTACCACCGTAGTGGGGGCGTGGCCACGGTAAAAACGTATTTCCGTGAAAACTGTGCCTGTCAGTCACGGTCTGCCTCTTTGGTGCTGTGCGAGGCTGCGAGCTCAAGAGGAACGACTTTTCAGACGCGGATAGACAAAAGACTCAACCATGGCCTCTGGGGTGACAGTGACCGATGAAGTTATTACAGTCTTCAACGAGATGAAGGTGCGTAAGGCCCAGGCGAACGAGGACGAGAAGAAGAAGCGGAAGAAGGCGGTGCTGTTCTGCCTGAGCGAGGACAAGAAACACATCGTCCTTGAATCGGGTAAAGAGATCCTGACTGGCGATGTGGGTACTACCATTGCAGACCCCTACCTGCACTTTGTCAAGATGCTGCCCGCAGATGACTGTCGCTACGCCCTCTATGACGCCACCTACGAGACCAAGGAGACCAAGAAAGAGGACCTGGTCTTCATCTTCTGGGCCCCAGATGGTGCTCCACTGAAGAGCAAAATGATCTACGCCAGCTCAAAGGATGCCATTAAAAAGAAATTCACAGGTATCAAGCATGAATGGCAAGTTAACGGTTTGGAAGACATCAAAGATCGGCGAACCTTAGCAGAGAAGCTTGGAGGCTCGTCAGTGGTCACCCTTGAAGGTGGGCCTGTATAAATCCCGTCTCGGGTATGATCTGAGGCCTACagggaaagaaaaaaaaaacagaattttAAATCCCGTGGGTATGGCTGTTCATTCCAGAATGATAAGGAATTAGGTGAGGGGGGTTTAGAGTACAAATTTGAGGGTGTTGGGATGGGGTATTTTGTTGTGTGGAGAAAAATCAAGCATGCTGTTTCATGGTTTAAAATTGTGGTTATCATTCCACTTGTCACAATGAAGAACACAGACATGTCTTAAATGGCAATTTGTGATGAAGGATTATGAAAAAATAGATGAAGATTTGTCACCATTTCTGAGATTGGCCTTGCAACTTCCAAACTCATGAAGAATGATATCTAATGGAAGAAAATTTGCCCTTGCATTTTCCAACTAATGAACAAAATGGGTTTTACAGagactttttttttaaacagatgaGTACTGGTTATGTCTCTTGTTTAATGGAGGGGTGTCTGGATCAGGCAGATGAAAGAAACTGATGAGCAAGCCTATGACCAACCCACTGGGTTAATTTATGCACTTTGTTCACATGCATCTGATGGCAATTCCTGTATTGCCAAATTAGTTATGCTTTAGCATGTCTAGCTAAATCTAGTTTTATTTTCCAGCATGCTTCCAGTAAAATTAAAATTCCAAAATGTGACCTTATTCTATTAAGTTATTTCCAAAACCTTTGAGCAAACAGTAAATGTGCTGTGTACAAACAAAAATGCATTCCTTTTTTCATGATAATCTCAGAACAGCTTGAACAGGGATCAATTGGAGTCAGGGGTATGTCGTAGTGTGGGTGGCTCAAGTTGGAAGAAGCCTATGAGAGCAAGTAAAGTGTATATGTGGGTGTTCTGTTTTTGTCTCCTTGTCTAAATAAAGAAAATGCACTTACATTTATTA

Function

NR:

description
PREDICTED: cofilin-2-like isoform X1

GO: NA

KEGG:

id description
K05765 CFL; cofilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618561.2 True 1591 mRNA 0.43 4 43714576 43722473

Neighbor

gene id symbol gene type direction distance location
LOC110533958 LOC106603168 coding upstream 101326 43566235 ~ 43613250 (+)
LOC110533955 LOC106603171 coding upstream 253561 43306783 ~ 43461015 (+)
LOC110533952 LOC106603217 coding upstream 550381 43161094 ~ 43164195 (+)
LOC118937075 NA coding upstream 598933 43115566 ~ 43115643 (+)
LOC118937079 NA coding upstream 599515 43114923 ~ 43115061 (+)
LOC110533965 LOC106603163 coding downstream 9749 43732222 ~ 43741030 (+)
LOC110533969 LOC106603161 coding downstream 42612 43765085 ~ 43769945 (+)
LOC110533970 calm1 coding downstream 50408 43772881 ~ 43779783 (+)
LOC110533971 LOC106603157 coding downstream 61346 43783819 ~ 43879779 (+)
fkbp2 LOC106603154 coding downstream 166875 43889348 ~ 43893837 (+)
G891845 NA non-coding upstream 3339 43710957 ~ 43711237 (+)
G891843 NA non-coding upstream 5528 43708810 ~ 43709048 (+)
G891841 NA non-coding upstream 7309 43707040 ~ 43707267 (+)
G891840 NA non-coding upstream 7876 43706375 ~ 43706700 (+)
G891835 NA non-coding upstream 8973 43705205 ~ 43705603 (+)
G891825 NA non-coding downstream 379 43722852 ~ 43723815 (+)
G891853 NA non-coding downstream 9166 43731639 ~ 43732031 (+)
G891854 NA non-coding downstream 19457 43741930 ~ 43742486 (+)
G891866 NA non-coding downstream 32424 43754897 ~ 43756540 (+)
G891884 NA non-coding downstream 59485 43781958 ~ 43782165 (+)
G891847 NA other upstream 1494 43712545 ~ 43713082 (+)
G891741 NA other upstream 114346 43534316 ~ 43600230 (+)
G891740 LOC106603170 other upstream 159059 43542466 ~ 43555517 (+)
G891133 NA other upstream 604900 42982682 ~ 43109676 (+)
G891188 NA other upstream 616959 43096720 ~ 43097617 (+)
G891856 NA other downstream 20444 43742917 ~ 43743490 (+)
G891951 LOC106603153 other downstream 215939 43938412 ~ 43940557 (+)
LOC110533983 LOC106603147 other downstream 355244 44077660 ~ 44081410 (+)
G892191 NA other downstream 933085 44655558 ~ 44659491 (+)

Expression


Co-expression Network