XLOC_002750


Basic Information

Item Value
gene id XLOC_002750
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22604273 ~ 22607715 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006041
TGACAAAGGCGACTTTTCATCAGGTTTGGTGTGAATAGAGTATTAGAAGACACTAACCAAACCGATTAAAAAATTTGCAATAATGACTGTGAATttaaatttgtgaaataaagATCAAAGGATGGAGAAACTGAATGATTTGTAGATACAATGGGTTTCAAAAGCCTTTTCAACCGTTTGGATACTCTATTATAGTTCTAAGCGATTCTTTAGAGCAGTGGTCCTCAATCCCCAGGCCACGGTGCTCATTTGGTAccgggctgcacaagaaatcattagcACTTCCGTTTAATTTATAATCCGAGTCTGAACGatcgtttattttgaaaaatgaccgtattctcttgcTTACGTCTTTAACCCACAAGTAGCAAAATAAGCTATTCATTGTAGTCATTGTAGTTTTGTTGAGAAAAAAGGCCCAGTAAAAGACCCAAacaactgccaaggaatggatccgcaacccaggtgtcaacaaatcaggtgaatccagcatgtctgtgcaagaagatcaactgctgaaAATTTGCAAATGATGTTCGCATAtcgcgtcttttctagagtttatgcaagtttgttatttccaatggagatgtGCAGCTTGTGCGTACAAGCGGCGTGACGCACTTTCACCTTCCAGAAGCACACAAGCTGAATGAATGTCGCGAGCGcactgcgagtcacgtgacaagatcTGACCAATTAGCCTtctactttgtatggaatataagaaaacacagaacacccaaacacagcagtgctttgtaatttttctccataaataaaacttgtgtcagagtgacagcaatgtcaacttgtcatcctctgagaaaactgttgatggtcacctagcaacCTACGAACCCCCAGTCATGCGTTAACCGGTCCACGATGATaaaaaaaaggttggggaccactgctttacAGTACAGTCCTTTACTTTAACAGATTGTGCTAGGTCACAATGCAGCCTAAAATGGAGTTCTTCTGAATGTACCTTTATTGTTGCCAGATTTCCTGTAGTGAATGTAGTGGTGGTAAAATAACCCGCACAGTGCAAATAAACAACGCAAACAGCAAGCACAATTAGAGTTCGTTTACATGACAACAATGTACTGAAAAcggatttgtttttcttttgcacTTTTTTGAAGAGGAGTCAAATGATCCTCATTTTCAGATATGGGAAAATGACTAAATCAAAGTTGCACTACATCGGCCAGGCCAGTAGGTGGCAACTTGGTAAAGAAACACTATATGTCTGCATAAATATGGTCCTGTAATCCACCATAGCTGTTATGGCTATCAAGTACTCATgatgttttcagtttttatttcatgtaAACGCGCCTTTAGTGAATTTCCCCCTAAAGTATAAAATGTATGAAGTACTtatattatttatagttattatttttcACTTAAAAGTCTCATTCTCTACTGTTTGGTTCTGAGGTTAAGCACAATAAATCCAACCATCAGAATGGACGTATAAACTCGTCTCGAACAGGTGTGTGACGTCCATTCACTTGTGCCGGAGCACATGTGAAGTCGTTAATCCAAACTCCGCCTCAGGTCGCACACAAAGACACACGTGTAAATAAACGCACACACGCTGCTATGACATAAAAAGCAGAATTCACCGCTTTTCTAGAAAGTACCATCAACTCAACTTCGGGTTCAAGTTCTAGTAACAGGCTCTAACATATAGAGTCGCTCGGACACACAGAGTGTGTGTGAGGTACTATAGAGTCAGCATGTGTTTTCTGTGTTTGTTGATCTCATACTTTATAGTAAATATTGGCAGGGCTCTGAGGGGGCATCTCTTGAACGATGTAGACAGGATGTCCATAATCGCCACTGACTTTTTCATAATGGGGGCAGTAGGCCGAGTCAGAGGTCCGCAAGGGAATGATGATGTCACTGGGTTCTGAGCCATTATTGTTGCCCCCACTGCTCCCTGTCGCCGTCCCACCAGAGCTGCCCCTCTTTGGAGTAAGAGAGGAGAGCGTGAGGGCAGGATGGTGCGTTTCGGAGTGCTTGGCTTTCCGACGTCGGTAGCAAACCACAGCAATCACAATGGCGATCAGTAGGATAAAGGCTCCCCCTGCACCGCCGGAGATCAGGGCAATGTTAGACGCAGACACGGCGCCACTTTCACTGGTTTCACCCCCTTTAGAGCCACTTTCAGTATCTGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006041 True 2200 lncRNA 0.42 2 22604273 22607715

Neighbor

gene id symbol gene type direction distance location
XLOC_002749 NA coding downstream 37065 22554349 ~ 22567208 (-)
XLOC_002748 NA coding downstream 69349 22530785 ~ 22534924 (-)
XLOC_002747 zgc:172339 coding downstream 98229 22501763 ~ 22506044 (-)
XLOC_002746 CT573337.1 coding downstream 106293 22494826 ~ 22497980 (-)
XLOC_002745 NA coding downstream 112815 22481158 ~ 22491458 (-)
XLOC_002751 AL807389.3 coding upstream 144517 22752232 ~ 22752348 (-)
XLOC_002752 pcolcea coding upstream 181604 22789319 ~ 22803854 (-)
XLOC_002753 per1a coding upstream 202000 22809715 ~ 22831611 (-)
XLOC_002754 vamp2 coding upstream 230649 22838364 ~ 22845485 (-)
XLOC_002755 and3 coding upstream 240841 22848556 ~ 22854758 (-)
XLOC_002744 BX005194.1 non-coding downstream 332370 22271789 ~ 22271903 (-)
XLOC_002732 NA non-coding downstream 760410 21646154 ~ 21843863 (-)
XLOC_002761 NA non-coding upstream 905407 23513122 ~ 23519215 (-)
XLOC_002762 NA non-coding upstream 910346 23518061 ~ 23520243 (-)
XLOC_002763 NA non-coding upstream 941261 23548976 ~ 23549882 (-)
XLOC_002764 NA non-coding upstream 1172827 23780542 ~ 24049205 (-)

Expression


Co-expression Network