LOC110533983 (LOC106603147)


Basic Information

Item Value
gene id LOC110533983
gene name LOC106603147
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44077660 ~ 44081410 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618596.2
gttgcaaaatgaaatAACGGAAACGGAAATAACATAACGGCGGGATAAGGAAGTGTTATCGGAATTTATGAAAACCATTTATCACATACACAACCGGTGCGGTAACTACCGTCTACTCTTCGTGGTTGGAAAAGGTCACGAAACCGCGTACGACAAGAAACAAGGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAA
>XM_021618597.2
CATCTACGTTTGCTTTAAATCTGATTGGTGGCACGGGAGACTAGCTATAATATATCCATAGAAGCAGACCGCACACGTTAGATCCGTCAGCTCAGGCTAGTTAGCTAGCACACAATCACCATTAGCAAACATTGAATAGTCATGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAA
>XM_036990391.1
CATTACACTGTGGTCCTGGTCAAGTTAGCATACAAGGAGTATTTGTTTCCCACAAAGAACATGGAAAGGTTTTGGTTTCAGTTTGGAACTTGTAAGACACTGAGGTCATGCTAGGGCACTCCCAATATGTTTTATGCAAATTGTGGCACTGCTGTTTGTCATGTTCACCCGGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAA
>TU1014802
ATCGGAATTTATGAAAACCATTTATCACATACACAACCGGTGCGGTAACTACCGTCTACTCTTCGTGGTTGGAAAAGGTCACGAAACCGCGTACGACAAGAAACAAGGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAA
>TU1014803
ATCGGAATTTATGAAAACCATTTATCACATACACAACCGGTGCGGTAACTACCGTCTACTCTTCGTGGTTGGAAAAGGTCACGAAACCGCGTACGACAAGAAACAAGGTACTCTAGGTGATCACTGACAGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGGGAGAAGTTAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTAGTGCTGAAGAAGGATGAGGAGCTATTCCGGGACTGGCTGAAAGATACATGCGGGGCCAATGTCAAACAGCAGGGCGATTGCTACGGCTGCCTGCGTGAGTGGTGCGATTCTTTCCTGTAGAGAAGCTATTTTATCCAGTTTCAGTTTTTCCAATTTCTAAATCGCAAACATCCATTTACCTCTACTGTGATCTCACATCAACTTACACCTCATATGGACTCTCACTGCACATGAGGAAGTTAAGCAAAGTCGGACGTCGTAAGACCCAGTTATTTTTGAACTATAGTCTTACAGACTTAAGAATGCTTTTAAAATCAGTAAGACATACTTTGCTGCAGTCACCCATGGGGTTGTTACACCCAACTGTGTAGCTCTGTAATGCTGACCTTTTCTATGATTAAAATATTTGGCTGCACAGAAACGTTGGGAATGAGCTCATTTTGGTTTTCCTGCAATGTGTTATTTCAATTTGTTCTCTGTCAAAGGAAAACTTATCAACACGGTCCCTTCATATAACTAACTAATGTTTGTACTCATCTCCAACTGACTGTTTGCCcgtgaatttatttaaattaactTATAATAGGATTTTAAACCATTTTAGATACCAGATAGCTTTAACATCTATAGTTAAAATGTCAAGatgttactgttcatttttacaaAACAGAGTTCACAGGAAACACTAAGGTGTAATTGCTCCATGTTATCTTGTGTTTGTTTTTGTCAAAGTTGAAGAGATGCCTCAATGTtgtaataattttttttttttatccacgaTCTACTTAAGTTATCTACCACAAATCACCTAATTTTCACACACAAAATGAAAGCCTAAAGTAAACCCACGAAAAGGAGCACTGTTGTTCCAGGAAGTAATTTCTAGGCATGCGCGTTTAATTGCTGAATGATGGTTTTTCTGAAATACTGGTTCATGTTTTTGTGTTTTGACTGTGAAAGCATATtcgtttttatatttttcttttgAAATGAACAAAACCAACTGCAAGATCTGGACAATTCtgggtttgttttgtttttgccatttttgggggggaaataaaatcacaaatgaaatgcaAACTTGTTTTTGGTGACAGTGTTTATTTTAATCTTTGATTACCGACGTCTCCTTTTATTCAGAGCTCTTTATTTTTAAGAAATATAAACAGTGAAGGTCTACATTGTAACATTGATCTTAAGAGTGATAATATTCCTAAGCAACCTTAAAGACTTGGTCTCGAAATGTACCTCTTAGTTAATGATATTGTCATAAAGGCATAACTTATTTATTATTAGGCTCCCACTTGACAAATTAAACCACTTATCAtttatccaggctgtatcacaaccggctgtgattgggagtcccatagggcggcacacaattcgcccagcgtcgtccgggtttggccgttgtaggccgccattgtaaataagaatttgttcttaacttgcctagttaaataaataaacatcattGATCATTTATTGGGAACCTCTCTTTTTAGATCACTGATCCTGTGTTAAGGCAGCTTACCACTTGTACACACCAGTGGAATTATTTGGGTCAGTGTGTATTGCCTTGTCCTCTTAATACCCTCTtactgggcggcaggtagcctagccttttggttgctagatcaaatccccaaggtaaaaatccgtcgttctgcccctgaacaaggcagttaacccactattcctaggctgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaagattCAATTACTGATCCAGTGGCACCTACATTTCTGCAACAAAGATTAAAAAAGTGACATCCAGGACTGTCTGTCGCACACAAACTATTTAACAAAGGCTGATTAGGGCAGGCAATGGATATTTACCATGAAGTGTGTATTAAAAGTTACAAATAATTCCAATTTGTGTTGTCACCCCTCCATCATCCATCTTGCCTATTGAGTTGATTTCAGAAATGAGCTATTTCATGTTGCATAATATTTACAGTATATCCACTTGTATGTTTTTCTTCAGGTTCAAGATTGTTAGCGTTCTTGGTGTGTTTTAGATGTGTATTTGTTATGAAAGGCTATCATGACTCATGTTAATGGTTACGCATTGTTTGCATTTTTGTCTGGACATTGTATTTCACAACATCCTGTGGCTTGTCTCAAAGGAGTGCACAGAAGAGCTTCTTCTCCCTGAATGGGTTCTCTGAGGTGGGCACAGGGGTGATGAGGGGGTCCTCAATCGCGTGGTTATCACAGTATGCCATCAGGTCTGCAGCCGCCTTTG

Function

NR:

description
PREDICTED: barrier-to-autointegration factor

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618596.2 False 1432 mRNA 0.39 3 44077660 44080196
XM_021618597.2 False 1411 mRNA 0.39 3 44077871 44080196
XM_036990391.1 False 1439 mRNA 0.39 3 44078238 44080196
TU1014802 False 1375 TUCP 0.39 3 44077717 44080196
TU1014803 True 2589 TUCP 0.39 3 44077717 44081410

Neighbor

gene id symbol gene type direction distance location
LOC110533982 LOC106603146 coding upstream 548 44067882 ~ 44077112 (+)
LOC110533981 LOC106603149 coding upstream 24665 44036575 ~ 44052995 (+)
LOC110533975 LOC106603152 coding upstream 98548 43963080 ~ 43979112 (+)
fkbp2 LOC106603154 coding upstream 183823 43889348 ~ 43893837 (+)
LOC110533971 LOC106603157 coding upstream 197881 43783819 ~ 43879779 (+)
bscl2 LOC106563482 coding downstream 17064 44097260 ~ 44100856 (+)
LOC110533985 LOC106603139 coding downstream 28137 44108333 ~ 44123770 (+)
LOC110533994 cnih2 coding downstream 179317 44259513 ~ 44268977 (+)
mrpl49 mrpl49 coding downstream 203622 44283818 ~ 44285540 (+)
LOC110533999 NA coding downstream 207340 44287536 ~ 44288301 (+)
G891988 NA non-coding upstream 69931 44006821 ~ 44007729 (+)
G891884 NA non-coding upstream 295495 43781958 ~ 43782165 (+)
G891866 NA non-coding upstream 321120 43754897 ~ 43756540 (+)
G891854 NA non-coding upstream 335174 43741930 ~ 43742486 (+)
G891853 NA non-coding upstream 345629 43731639 ~ 43732031 (+)
G892033 NA non-coding downstream 5497 44085693 ~ 44086002 (+)
G892034 NA non-coding downstream 5889 44086085 ~ 44086339 (+)
G892054 NA non-coding downstream 57403 44137599 ~ 44137831 (+)
G892048 NA non-coding downstream 70569 44150765 ~ 44155040 (+)
G892067 NA non-coding downstream 85066 44165262 ~ 44165505 (+)
G891951 LOC106603153 other upstream 137103 43938412 ~ 43940557 (+)
G891856 NA other upstream 334170 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 336630 43732222 ~ 43741030 (+)
G891847 NA other upstream 364578 43712545 ~ 43713082 (+)
G891740 LOC106603170 other upstream 522143 43542466 ~ 43555517 (+)
G892191 NA other downstream 575362 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 928638 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 1474041 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 1542061 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1820849 45898515 ~ 45901940 (+)
G891741 NA other upstream 477487 43534316 ~ 43600230 (+)

Expression


Co-expression Network