LOC110533987 (LOC106603145)


Basic Information

Item Value
gene id LOC110533987
gene name LOC106603145
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44123978 ~ 44134653 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618600.2
ACATCCGGTGAATATCTgcctcattgttctatctgtggtaaCATTTGTAAGCCAATTTTTGTGACAGCCACACTGAATTTGCGGCAGCCAGCCAGTCTGTCCTCTGCTACCACTCGAACAACGTTAAAGGGGCTCGTCTCAACATAGGCCAATGATTTCCAGCTCAGCATTCCTCAAAGGGACCCGTGCGGTCCAGTGCTTCAGACCGTTACACACCACACTCATTGCCAACATGCCTATCAAGGTTGGAGAAAAACTTCCGGCAGTGGAGGTTCATGAGAATGAGCCAGGCAATAAGGTGTCGATGGACCAACTCTTCAAGGGGAAGAAGGGAGTTCTCTTTGCTGTGCCAGGAGCTTTCACGCCTGGGTGCTCCAAGACTCACCTTCCAGGGTTTGTGGAGCAGGCAGCAGCGCTGAAGAGCAAGGGTGTGCAGGAGGTCGCCTGCATCTCCATTAACGACGCATTCGTTATGGCTGCCTGGGGGAAGGAGCATGGAGCAGGCGGCAAGGTGCGAATGCTGGCTGATCCTACTGGCGCATTCACTAAGGCAGTGGACCTATTGCTAGACAACGATCAGATTGTTGCTGTGCTTGGAAACAAGCGCTCCCAGAGGTACGCTATGTTGGTGGAAGATGGCGTTGTGAAGAATATCAATGTGGAGCCTGACGGTACTGGTCTGACATGCAGCCTGGCCTCTAATATGCTCTCTGAGCTGGTGTAGGCCTGTTAGGACTAGCTCACTCCAACCAGACAGCAGAAGTCTAACCTTAAGTTACAATGCACTCTCATACTACTTTACCTGACCCTTGTCACATGCCTGTGAAGATAGATGTGGTTTAATGGACAGACATTGTATGGTTCATAAACTGTGATTAAAGCAAAACATGTAGACTGCAAA
>XM_021618601.2
ACATCCGGTGAATATCTgcctcattgttctatctgtggtaaCATTTGTAAGCCAATTTTTGTGACAGCCACACTGAATTTGCGGCAGCCAGCCAGTCTGTCCTCTGCTACCACTCGAACAACGTTAAAGGGGCTCGTCTCAACATAGGCCAATGATTTCCAGCTCAGCATTCCTCAAAGGGACCCGTGCGGTCCAGTGCTTCAGACCGTTACACACCACACTCATTGCCAACATGCCTATCAAGGTTGGAGAAAAACTTCCGGCAGTGGAGGTTCATGAGAATGAGCCAGGCAATAAGGTGTCGATGGACCAACTCTTCAAGGGGAAGAAGGGAGTTCTCTTTGCTGTGCCAGGAGCTTTCACGCCTGGGTGCTCCAAGACTCACCTTCCAGGGTTTGTGGAGCAGGCAGCAGCGCTGAAGAGCAAGGGTGTGCAGGAGGTCGCCTGCATCTCCATTAACGACGCATTCGTTATGGCTGCCTGGGGGAAGGAGCATGGAGCAGGCGGCAAGGCAGTGGACCTATTGCTAGACAACGATCAGATTGTTGCTGTGCTTGGAAACAAGCGCTCCCAGAGGTACGCTATGTTGGTGGAAGATGGCGTTGTGAAGAATATCAATGTGGAGCCTGACGGTACTGGTCTGACATGCAGCCTGGCCTCTAATATGCTCTCTGAGCTGGTGTAGGCCTGTTAGGACTAGCTCACTCCAACCAGACAGCAGAAGTCTAACCTTAAGTTACAATGCACTCTCATACTACTTTACCTGACCCTTGTCACATGCCTGTGAAGATAGATGTGGTTTAATGGACAGACATTGTATGGTTCATAAACTGTGATTAAAGCAAAACATGTAGACTGCAAA

Function

NR:

description
peroxiredoxin-5, mitochondrial-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618600.2 False 901 mRNA 0.50 6 44123978 44134653
XM_021618601.2 True 862 mRNA 0.50 5 44123978 44134653

Neighbor

gene id symbol gene type direction distance location
LOC110533984 LOC106603148 coding downstream 38708 44079886 ~ 44085270 (-)
LOC110533979 LOC106603150 coding downstream 93987 43996131 ~ 44029991 (-)
zgc:77262 rbm4 coding downstream 135027 43985831 ~ 43988951 (-)
LOC118966632 NA coding downstream 141596 43979834 ~ 43982382 (-)
LOC110533974 LOC106603153 coding downstream 157129 43909902 ~ 43966849 (-)
LOC110533988 LOC105010947 coding upstream 8091 44142744 ~ 44165566 (-)
LOC110533989 LOC106603141 coding upstream 38221 44172874 ~ 44179377 (-)
LOC110533117 stx5 coding upstream 64525 44199178 ~ 44209264 (-)
LOC110533991 pura2 coding upstream 78602 44213255 ~ 44218956 (-)
LOC110533990 LOC106603140 coding upstream 84394 44219047 ~ 44237878 (-)
G893175 NA non-coding downstream 41536 44082230 ~ 44082442 (-)
G893171 NA non-coding downstream 59232 44064447 ~ 44064746 (-)
G893071 NA non-coding downstream 146852 43884603 ~ 43977126 (-)
G893009 NA non-coding downstream 230152 43893045 ~ 43893826 (-)
LOC110533972 LOC106603159 non-coding downstream 278282 43838374 ~ 43846088 (-)
G893201 NA non-coding upstream 3658 44138311 ~ 44138523 (-)
G893202 NA non-coding upstream 4204 44138857 ~ 44139077 (-)
G893222 NA non-coding upstream 34891 44169544 ~ 44169757 (-)
G893228 NA non-coding upstream 46361 44181014 ~ 44181216 (-)
G892965 NA other downstream 413009 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 440058 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 876343 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 1053820 43057611 ~ 43070230 (-)
G890403 NA other downstream 2046031 42076741 ~ 42077947 (-)
LOC110534000 frmd8 other upstream 171566 44303605 ~ 44308978 (-)
G893541 NA other upstream 633797 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 876676 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1612662 45747090 ~ 45751405 (-)

Expression


Co-expression Network