LOC110533117 (stx5)


Basic Information

Item Value
gene id LOC110533117
gene name stx5
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44199178 ~ 44209264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989351.1
ATGGCTAGGGGTAAAATTTGTCTGCAGGTCACTACAGGGGAGACAGGTTGGGGTCCATTCCATTTCAGACAACACAGTGACTTTACCCTCATGGCAAAGAGGATTGGAAAGGACTTGAGTAACACTTTTGCCAAACTAGAAAAACTCACAATATTTGCCAAAAGGAAATCCCTCTTTGATGACAAAGCTGTGGAGATTGAGGAGTTAACCTACATCGTTAAAACGGACATAAACAGTTTGAATAAACTGATAGCACAGCTGCAGGGCCTTGTGCGCTCCAGACAAAGTCAGAATGGCAAACATCTACAGACACATTCCAACACCATCGTTGTCTCCCTCCAGTCAAAACTGGCATCAATGTCAAGCGACTTTAAGTCCGTGCTGGAGGTCAGGACTGAGAACCTCAAAGAGCAGAAAACTAGAAGAGATCAGTTTTCTCAAGCTCCAGcatcctcctcccatctccacgtCAGCAACTTCAATGTGGGAAAACTCGTATCAGCTCTAATGTACAAAACAACAGGAAACAGTACAAGTGGTCTAACTCTTGTGGCGTGTGTTGTACAGGATTCGTACATCCAGAGGCGCGCAGACACCATGCAGAACATAGAGAGCACCATCGTAGAGCTGGGCTCTATATTCCAGCAGCTGGCCCACATGGTGAAGGAGCAGGAAGAGACTGTGCAGAGAATTGATGCCCACGTGAAGGACAGCCAGCTCAACGTAGATATGgcacattcagagatcctcatgtACTTTCAGTCTGTCTCATCCGACCGCTGGCTCATGGTCAAAATCTTCCTCATCCTCATAGTATTCTTCATCATCTTTGTGGTCTTCTTTGCCTGAGGACCAGGAGGCACTTGGCTAAGAATGATAGGAAGGAGGATGAGAAAGGGAGGAATTGTgctggaggagagtagagaggatgTGTGGGGAACAGAGGAGTAGCTGGATGGGTGGTGTGTTCCCTCTTTGTTTCTCCTTTGTTTTTCAGACTTTCTCATGTGATTTAAAGAAAAGACCACTACTAACAAACAATTCTATATGTGTCAGGATGCAGTTGTGTTAATAATAGCTGTATGGGAGGTAGAAAGGAGATTAAAAATATTATTATCCTCCATTGTATGGAGTaaatagatgatgatgatgatggcaggATAGAAGACTATATTGCAGTTGGATTAAAACTTTATTTTTGTTTTCAaatcaaaataaacatttcatttttatttcacctttatttaaccaggtaggccagttgagaacacgttctcatttacaactgcgacctggccaagataaagcaaagcagt
>TU1016035
TCGATTTTCCCAGTCGGAGatagttgttttgaacgcactgaagtcggagatttcctAGTTCCCATTTGTTTTGAACGCTGTATTATATTAGAGAAGCAGTTTTAGCCTATCTTCGTATTATACTGTATTTGGTGGAGTGATCAAATAAAAATGATAAATAAGTAGCGAGCCATATACTTACCGGTGATGTATCTGAGCATCCATGAACACGTGTCATTGCCACGGTCCTAGGAAAAGCCAGGAAGGGGTGTACCTAGGGCTTGCCCAGACCCAGTCACTGCTGATCCAGCCACAGGACCCACAACTCACAGCGCCCAGTACACCTCCACCTGACCCATGGTGGACATAAGCAACATGTCTGGCAGGGATCGCACCAATGAGTTCCAGTTTGTCTGCAGGTCACTACAGGGGAGACAGTTGCCAAAAGGAAATCCCTCTTTGATGACAAAGCTGTGGAGATTGAGGAGTTAACCTACATCGTTAAAACGGACATAAACAGTTTGAATAAACTGATAGCACAGCTGCAGGGCCTTGTGCGCTCCAGACAAAGTCAGAATGGCAAACATCTACAGACACATTCCAACACCATCGTTGTCTCCCTCCAGTCAAAACTGGCATCAATGTCAAGCGACTTTAAGTCCGTGCTGGAGGTCAGGACTGAGAACCTCAAAGAGCAGAAAACTAGAAGAGATCAGTTTTCTCAAGCTCCAGcatcctcctcccatctccacgtCAGCAACTTCAATGTGGGAAAACTCGTATCAGCTCTAATGTACAAAACAACAGGAAACAGTACAGCCTGACTTACTACTCTCTCTTGTAGGATTCGTACATCCAGAGGCGCGCAGACACCATGCAGAACATAGAGAGCACCATCGTAGAGCTGGGCTCTATATTCCAGCAGCTGGCCCACATGGTGAAGGAGCAGGAAGAGACTGTGCAGAGAATTGATGCCCACGTGAAGGACAGCCAGCTCAACGTAGATATGgcacattcagagatcctcatgtACTTTCAGTCTGTCTCATCCGACCGCTGGCTCATGGTCAAAATCTTCCTCATCCTCATAGTATTCTTCATCATCTTTGTGGTCTTCTTTGCCTGAGGACCAGGAGGCACTTGGCTAAGAATGATAGGAAGGAGGATGAGAAAGGGAGGAATTGTgctggaggagagtagagaggatgTGTGGGGAACAGAGGAGTAGCTGGATGGGTGGTGTGTTCCCTCTTTGTTTCTCCTTTGTTTTTCAGACTTTCTCATGTGATTTAAAGAAAAGACCACTACTAACAAACAATTCTATATGTGTCAGGATGCAGTTGTGTTAATAATAGCTGTATGGGAGGTAGAAAGG

Function

symbol description
stx5 Enables SNAP receptor activity and protein N-terminus binding activity. Involved in several processes, including Golgi disassembly; early endosome to Golgi transport; and regulation of Golgi organization. Located in Golgi apparatus and vesicle.

NR:

description
Syntaxin-5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989351.1 False 1316 mRNA 0.43 10 44199178 44206845
TU1016035 True 1354 TUCP 0.46 8 44199396 44209264

Neighbor

gene id symbol gene type direction distance location
LOC110533989 LOC106603141 coding downstream 19801 44172874 ~ 44179377 (-)
LOC110533988 LOC105010947 coding downstream 33612 44142744 ~ 44165566 (-)
LOC110533987 LOC106603145 coding downstream 64525 44123978 ~ 44134653 (-)
LOC110533984 LOC106603148 coding downstream 113908 44079886 ~ 44085270 (-)
LOC110533979 LOC106603150 coding downstream 169187 43996131 ~ 44029991 (-)
LOC110533991 pura2 coding upstream 6410 44213255 ~ 44218956 (-)
LOC110533990 LOC106603140 coding upstream 12202 44219047 ~ 44237878 (-)
LOC110533992 NA coding upstream 41419 44248264 ~ 44258913 (-)
tm7sf2 tm7sf2 coding upstream 81503 44288348 ~ 44294245 (-)
LOC110533996 LOC106603134 coding upstream 87693 44294538 ~ 44301656 (-)
G893126 NA non-coding downstream 1288 44197521 ~ 44197890 (-)
G893120 NA non-coding downstream 1896 44196942 ~ 44197282 (-)
G893230 NA non-coding downstream 17243 44181605 ~ 44181935 (-)
G893229 NA non-coding downstream 17605 44181345 ~ 44181573 (-)
G893228 NA non-coding downstream 17962 44181014 ~ 44181216 (-)
G893265 NA non-coding upstream 22117 44228962 ~ 44238819 (-)
G893269 NA non-coding upstream 35423 44242268 ~ 44242544 (-)
G893275 NA non-coding upstream 63386 44270231 ~ 44270447 (-)
G893280 NA non-coding upstream 78263 44285108 ~ 44285959 (-)
G892965 NA other downstream 488209 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 515258 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 951543 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 1129020 43057611 ~ 43070230 (-)
G890403 NA other downstream 2121231 42076741 ~ 42077947 (-)
LOC110534000 frmd8 other upstream 99374 44303605 ~ 44308978 (-)
G893541 NA other upstream 561605 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 804484 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1540470 45747090 ~ 45751405 (-)
G894917 NA other upstream 1710434 45917279 ~ 45918339 (-)

Expression


Co-expression Network