LOC110533990 (LOC106603140)


Basic Information

Item Value
gene id LOC110533990
gene name LOC106603140
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44219047 ~ 44237878 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618609.2
TGACTAGCCTTCTGACGTTCCACTAGGAAAGCTCGACACCGGATTTGTGATTGTAGAAGCACAGAGGAGAGGGTGGCTTCAGGGGAGTTTCTTGGTCTGCTGTTAGCGAGCCTTGTAGTGTCAGTTAGCTAAACAAGGGTAGAAGGCTAACAAATTTACTCATTCAAACGTATTACCGCGTCCGGGACAGCCACAGAGTCGTTAGCCAGCGATATCATCAACTTTACTACATTGAACAACTAGATTGAGACGACAAGTAAATCTACAATACTTCTGAATTCGGGCACCATGTTCAAAAGGAATGGCAAGAAGGACCCAGAACTAATCCAAAATGTGTCGGAGGGGCTGAAAAAACTGTACAAGACCAAACTCTTTCCCTTGGAAGACACCTACCACTTCCACGATTTCCATTCACCGGCTTTGGAAGATGCCGACTTTGACAACAAGCCTATGGTGCTCTTGGTTGGCCAATACTCCACGGGTAAAACCACATTTATCCGGCATCTTATGGAGCAAGATTTTCCCGGGATGCGGATAGGGCCCGAACCGACCACCGACTCCTTCATAGCGGTCATGCATGGAGAGCAGGACGGGCTGATCCCAGGCAACGCTCTAGTAGTTGACCCCAAAAAACCCTTCAGAAAACTCAACGCTTTTGGCAACGCCTTTCTTAACAGGTTTGTGTGTGCTCAGATGCCCAACGCTGTATTGGAGAGCATCAGTATCATTGACACCCCAGGAATCCTGTCTGGAGAAAAGCAGAGGATCAGCAGAGGCTATGACTTTGCTGCAGTGCTGGAGTGGTTTGCAGAGCGTGTTGACCGCATCATTCTGCTTTTCGACGCCCACAAGCTAGACATCTCGGATGAGTTCTCTGAGGTGATCCGCTCCCTGAAGAACCATGAGGACAAGATGCGGGTGGTTCTGAACAAGGCTGATCAGATTGGCACACAGCAGCTGATGAGGGTCTATGGCGCCCTCATGTGGTCTCTTGGTAAAATTGTCGGTACGCCAGAGGTGATCCGGGTGTACATTGGTTCTTTTTGGGCTCAGCCGCTCCTGGTCGCAGACAACCGGAAGCTTTTTGaggcagaggaacaggacctTTTCAAGGACATCCAGGGGCTACCTCGGAATGCTGCTCTGAGGAAGCTCAATGACCTCATCAAGCGGGCTCGCCTCGCCAAGgtccaCGCCTACATCATCAGCTCTCTAAAGAAGGAGATGCCCAATATGTTTGGGAAGGAGAATAAGAAGAAGGAGCTGATTGCTAACCTGGGGGAGATCTACACGAGGATTGAGAAAGAGCACCAGATCTCACCGGGAGACTTCCCCAAACTAGCCAAGATGCAgGAGATCTTGGCTAACCAGGACTTCAGTAAGTTCCAGGCAGTGAAGCCCAAGCTGCTGGAGGCTGTTGAGGACATGCTAGCCAATGACATCGCCAAACTCATGACCCTCGTCCGCCAGGAGGAGGCAGCCATGCCCAGCCAGTCAGTCCAGGGTGGCGCCTTTGAGGGCACCATGAACGGGCCTTTTGGCCATGGCTACGGCGAGGGTGCAGGCGAGGGTATTGATGAGCTGGAGTGGGTGGTGGCACGAGACAAACCCACCTACGACGAGATCTTCTACACCCTGTCTCCTGTCAACGGCAAAGTGTCAGGTGCCTTGGCTAAGAAGGAAATGGTGAAGTCCAAGCTGCCCAACACAGTGCTGGGAAAGATCTGGAAGCTGGCCGATGTAGACAAGGATGGATACCTGGACGATGACGAGTTTGCCCTTGCCAATCACTTGATCAAGGTGAAGCTTGAGGGGCACGAGCTTCCCACTGATCTGCCAGAACATCTTATCCCTCCCTCCAAAAGGGGACTGTAGAATTGGAACTCTTTCATATATGGGCAGGCCTGAATAAATAGATGGTGGCTCAGAGGTTTTTCGGAGTGAGTGGGATGAGTTAAAAGGGAAAGGTGCATTTTTGGCCAATGTGAGTGTTGAGGAGAATCATTCTGGTTAGGGTGTTGGCTGTTGCGCCATTTGACATAAGACTTCTGCATAACTGCATGTTGTGTTAGAATGATTCCATCTGATGTGAGACAATGGAGGGGGTGGCGGTCTGGGTAGGGCTATGATAATGGTGTTGGGGTGAAATTAATGTTAGACTGACTATGATAATTAACATAGTCCAttcaaaaataaatgttaataTCTCTAACTTCACCTGAATCCCTTATCTTCCTTAGTACTTATTTGTCTTACCATTATCTTTATCAAAAGGCATTTGTTGTAGTTATCATGTATCAAGTTCAATCTCCACTTTGGGACCTGCTGAATTTGTGCTTCAATTTATTGTATGGCCATTCCTTTTAATTTTTTTCTCACGTCACAGGTCACTCAACAAATCAAACGATTACAAAGAAATAAGGGTAACTCAAACATTCTATTTAAACCTAGTCTTCCATTAAGTTTGATTTGTGTCAGTGTAGTCAATTGTTTATTCTACTTACAAATGGTTTTGATTATAAATTATTATAAATCTGTATATTTAGCTTTTCCTAATGCCATTGTAAAGCAAAGTATTCTTAGCCTGAGGGAATATAGATACATTCGTATTGTCACGGATTTAACACTGACAAACTAGTGTCTTGGACGACCTTAACTACCTGCTCTCTTTTTGAACATCTGTCTGAAAACGCTCCAGTAAACCATATATTATGTAAAGAAAAATGACATGTGATCTAGTGTATGCTAAACTTTGTGCAGTTATCTTTTATCTCAGATACCCAGCCCATACTCCGAGGCTTTCCAGTATAGTGCTTTCGATTGCAACAACAAAATATTGACTTCACACTCACTGGTTCCAGGAAATGGGGTGGGTTGGGCATACAGTATGCATTGGCAAGATATctgatcaaatgtatttatggaaAAGCAATTAACGATTTGGGGCGCAGTACCTGTTTAAAAATCCCAGTTTGATCCCTGGCAGTCACATCTAGCCTTCAATGCCAAAGTCGCTCAAGTGTTGTATGTAGAAGTGGCTCTAGCCCTCAAATGTTAATATGTACATTGTTTTTTTTGTCTCTTCTGAAATAAAATGTCTATTCAAATA

Function

NR:

description
EH domain-containing protein 1-like

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12483 EHD1; EH domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618609.2 True 3109 mRNA 0.46 5 44219047 44237878

Neighbor

gene id symbol gene type direction distance location
LOC110533991 pura2 coding downstream 91 44213255 ~ 44218956 (-)
LOC110533117 stx5 coding downstream 12202 44199178 ~ 44209264 (-)
LOC110533989 LOC106603141 coding downstream 39670 44172874 ~ 44179377 (-)
LOC110533988 LOC105010947 coding downstream 53481 44142744 ~ 44165566 (-)
LOC110533987 LOC106603145 coding downstream 84394 44123978 ~ 44134653 (-)
LOC110533992 NA coding upstream 10386 44248264 ~ 44258913 (-)
tm7sf2 tm7sf2 coding upstream 50470 44288348 ~ 44294245 (-)
LOC110533996 LOC106603134 coding upstream 56660 44294538 ~ 44301656 (-)
LOC110534000 frmd8 coding upstream 65727 44303605 ~ 44308978 (-)
LOC110534001 LOC106603132 coding upstream 74275 44312153 ~ 44319559 (-)
G893126 NA non-coding downstream 21157 44197521 ~ 44197890 (-)
G893120 NA non-coding downstream 21765 44196942 ~ 44197282 (-)
G893230 NA non-coding downstream 37112 44181605 ~ 44181935 (-)
G893229 NA non-coding downstream 37474 44181345 ~ 44181573 (-)
G893228 NA non-coding downstream 37831 44181014 ~ 44181216 (-)
G893269 NA non-coding upstream 4390 44242268 ~ 44242544 (-)
G893275 NA non-coding upstream 32353 44270231 ~ 44270447 (-)
G893280 NA non-coding upstream 47230 44285108 ~ 44285959 (-)
G893287 NA non-coding upstream 82392 44320270 ~ 44323970 (-)
G892965 NA other downstream 508078 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 535127 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 971412 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 1148889 43057611 ~ 43070230 (-)
G893541 NA other upstream 530572 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 773451 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1509437 45747090 ~ 45751405 (-)
G894917 NA other upstream 1679401 45917279 ~ 45918339 (-)

Expression


Co-expression Network