tm7sf2 (tm7sf2)


Basic Information

Item Value
gene id tm7sf2
gene name tm7sf2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44288348 ~ 44294245 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618616.2
GTTTAGAGATGGGTCATGTCAGGGGGGTATCTTTGGGGGCAGTTCTACGCACGCGTTCTTATCGTCGCACTGTACTTGTTGTTTGGCGTGAGTATACATGAGGAATACAGGAGACAGATAATGAAGTTCAACAAACAAAAATCCCCACAAGCAGAAAAGGAATTTGGGGGGACTTTGGGTGCCACCTGTATACCTGTCTTCTTGCCCCTGACGGTACTTTACCTGCTCTGTGTATGTCGCTCCCCTGTGGCCAGCGTGCTCCAGTGGCCCCCTGTCCTGCCCCCCACAGCCCAGCTATGGGACCCTCTGGCCCCTGTTCTCATACTGGGCTGGATGGCCCTCCAGAGCTTCTTTTACCTGCTGCCTATGGGGAAGGTGTCTGAGGGGATGGTGCTAAAAGATGGCTCGAGACTCAAGTACCCCATAAACGgtTTTCATGCCCTTTGCATCACAGCTGTGCTGTTGACATTGTCACTATGGCTGGGGATGCCTCTGGGGTATCTCTTTGAGCTGTTGTTGCCCCTGGCAGTGTGTGCTATTGGGGtgtcattcctcctctccctctacctctacatatCCTCCTTCTGGGCCCCTCACCATGCCCTCGCCCAGGGGGGAAACACAGGAAACCCCCTGTATGATTTCTTTATGGGACGAGAGCTGAACCCGCGGATTGGAAGCTTTGATCTGAAGTATTTTTGTGAGCTGAGACCAGGTCTGATTGGCTGGGTGGTGATTAACTTTGGGATGCTAATGAAAGAGGTGGAGCTACGGGACTCCGCCTCCCTGGCCATGATACTGGTCAACGGCTTCCAGCTGCTCTACGTGGCGGATGCTCTGTGGAATGAGGAGGCTGTGCTGACCACCATGGACATAGTGCATGATGGCTTTGGGTTTATGTTGGTCTTTGGGGACCTGGCCTGGGTTCCCTTTACGTACAGCCTGCAAGCTGCCTTCCTGGTCGTGCACCCACAGTCCCTTAGTCCTCTAGGAGCCACAGCTATAGTCACattgaatgGTGCTGGGTATTATATCTTCAGAAAATCAAACTCCCAGAAGAACCAATTCAGACGGGACCCTACGCATCCCAGTGTTTCAAAACTGGAGACTATTGCCACAGCAACTGGGAAGCGCCTTTTGGTGTCTGGCTGGTGGGGCCTCGTACGCCATCCAAACTACCTAGGAGACCTTCTCATGGCCCTAGCATGGTCCCTGCCGTGTGGATTCAACCATCTTCTACCTTACTTTTATGTTGTGTACTTCACTGTCCTGTTAATTCACCGAGAGGCCCGTGACGAGAGGCACTGCAGGGCCAAGTATGGCCTGGCATGGGACAGCTACTGCAGGCGCGTGCCCTACAGGATCTTCCCCTATATCTACTGAGCTAAGCTTCGACCGAAGCAGTCAGGGCAGAGCCGGGGCCCGGGAGCATGCAAGGGATGTACACTGCATATGATGGCCAGCTGTGTTGTATAAAGTGCACTTTCTGAACCTCAACAGACTAGACTGAACAATAACTACTGAAATGCTGtcttttctctgtaataatgAATATGTACTTTACACATGATGACTGTGGAGAAAATGGCACTTCTGACTCTATATAAACTGGCCAGACAAGCTGACAGTTTGGCCCAGCGGCTTTACCATTTGCTCACAGTAGTGATGTCTTTCTAGTGAGTCTCAAGCACGATCAATCTTGAGCATTAGCTTTCATACTGATCTTTCCTTTCTTCCTCAAGATTGGACACTATggactggtttcccagacacagattaagcctagtcctggactaaaaagcatgctcaatgggGAATCTCCATTTAAAGTGTGTTTTAGCACAGGAGTAGGCTTAATCTCTGTCCAAGAAACCAGCCCTACACTTTATTTCAAATGAACAGATGAGTCACATTTCAGTAACTGTGGTGTATTAGCACTGATCTGAAAGATATTCAAATGATCAGGAAAATGTATGCATGTATTGAAATGGTCATGTTGGACGTTATTTGGAGTGACGAGTGTTATCCTGTTTCTTTAATATTTCAAAACTGAAATTGAAGCCTTAAGTTTACCTTAACGTTATTGCATAACTTTGTTGTGAatttttacaacaacaaaaacccAATAAACAATAGTAATTGCAGTCAGAATAAATGTTTACAAAATTGTATGCAAACAAGTAATACCAGTCTGGCACTGAATTTGAATTCATAATAAATTGGGTAAATATGA

Function

symbol description
tm7sf2 Predicted to enable oxidoreductase activity, acting on the CH-CH group of donors. Predicted to be involved in sterol biosynthetic process. Predicted to act upstream of or within cholesterol biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nuclear inner membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in central nervous system; gut; and liver. Orthologous to human TM7SF2 (transmembrane 7 superfamily member 2).

NR:

description
delta(14)-sterol reductase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00222 TM7SF2, ERG24; Delta14-sterol reductase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618616.2 True 2233 mRNA 0.48 11 44288348 44294245

Neighbor

gene id symbol gene type direction distance location
LOC110533992 NA coding downstream 29435 44248264 ~ 44258913 (-)
LOC110533990 LOC106603140 coding downstream 50470 44219047 ~ 44237878 (-)
LOC110533991 pura2 coding downstream 69392 44213255 ~ 44218956 (-)
LOC110533117 stx5 coding downstream 81503 44199178 ~ 44209264 (-)
LOC110533989 LOC106603141 coding downstream 108971 44172874 ~ 44179377 (-)
LOC110533996 LOC106603134 coding upstream 293 44294538 ~ 44301656 (-)
LOC110534000 frmd8 coding upstream 9360 44303605 ~ 44308978 (-)
LOC110534001 LOC106603132 coding upstream 17908 44312153 ~ 44319559 (-)
LOC110534010 NA coding upstream 217244 44511489 ~ 44513298 (-)
LOC110534015 LOC106603119 coding upstream 331677 44625922 ~ 44636337 (-)
G893280 NA non-coding downstream 2389 44285108 ~ 44285959 (-)
G893275 NA non-coding downstream 17901 44270231 ~ 44270447 (-)
G893269 NA non-coding downstream 45804 44242268 ~ 44242544 (-)
G893265 NA non-coding downstream 49529 44228962 ~ 44238819 (-)
G893287 NA non-coding upstream 26025 44320270 ~ 44323970 (-)
G893253 NA non-coding upstream 53545 44347790 ~ 44349638 (-)
G893325 NA non-coding upstream 97830 44392075 ~ 44392427 (-)
G893391 NA non-coding upstream 189029 44483274 ~ 44483554 (-)
G893394 NA non-coding upstream 192775 44487020 ~ 44487986 (-)
G892965 NA other downstream 577379 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 604428 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 1040713 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 1218190 43057611 ~ 43070230 (-)
G893541 NA other upstream 474205 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 717084 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1453070 45747090 ~ 45751405 (-)
G894917 NA other upstream 1623034 45917279 ~ 45918339 (-)

Expression


Co-expression Network