LOC110533996 (LOC106603134)


Basic Information

Item Value
gene id LOC110533996
gene name LOC106603134
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44294538 ~ 44301656 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618614.2
GAGTCATTGCTGCCACCTACTGGCTCGTTTATCACGGGCTTCTCATCGGGACATGTACGGGAACTTCTGTTTGATTTAGTGGCGAATAGCTGGTTTTCTGTTTAGCTGGCGGTTACATTTAGCTGTTATTTGGTCTGTCCTGCAATTCATAACAATTTCGCTGGTATTCAGTTTAAATGGACGGGGATATTTGTGCTACGGCCACCACACCACCTGACTCCGACCCAGCGCGGAAGCGCCGAGTGCACGGTATGTTGAAGCTCTATTATGGGTTGAACGAGGAAGGAAAGACCGTGGATCAAGCAGAGTCGATGAATCCTTGCGATATAAACGGCACGCATTTCGATCCTGAGGTGTATCTCAACAAGCTTAGGAGAGAATGTTCCCTTGGAGAGCTGATGGACCAGGAGACCTGCATGGTGAAACAGATCCGCTCCTTGGACAGTGACATGCAGACATTGGTGTATGAGAACTACAACAAGTTCATCTCTGCCACAGACACAATCAGAAAAATGAAGAATGATTTTAAGAAGATGGAGGACGAAATGGATTGTCTCTCTACTAACATGGCTGCTATCACAGAGTTCAGTGCACACATCAGTGGGACTCTTCAGGACCAGCATGCACAGATAACCAAACTGTCAGGAGTCCACACTCTCCTTCGAAAGCTGCAGTTCCTGTTTGAGCTGCCTGCCAGGCTGAATAAGTGTCTGGAGCTACAGGCTTATTCCCAGGCGGTGAGCTCCCATCGTCGTGCCCGCTGCGTGCTGCAGCAGTACAGCCACATGCCCTCCTTCAGGGGCATCCAGGATGACTGTCATGCCATCATGGACAAGCTGGCACAGGAGCTTAGGCAGAAGTTCAGAGATGGAGGTTCGAGTGCGAAGGACCTTTCAGAGTGTGTGGAGCTTCTGCTGCAGCTGGATGAGCCAGCAGAGGAACTGTGTGACAAGTTCCTGATCCACGCCCAGTCACGACTGGAAGCAAACCTCCGAGGACTGGAGGCGGAGCTAAGACCACCATTGTCCTCTGGACCCACATCAGTGATAGATCCCTCCATTGGCCCTGCCCGCAGACTGTCAGCTGCACCCACTGCTGGATCTCCCACTGACCCCACCTCTCCAGGcaatcccttcctctcttccagcTCAAGGACTGATATTCTGGAATTCATAGACAGAGGTTGCAATGAATTCGTCAGCAGCCTTTGCTTGGTCATTGCCTCGTACCAAGAGTTGTTTGTCAACCGTCCACAAGAGGGTGAGCTGGCCTCCAAAAACATCCCCCATATGGCTATTGGCAAGCTGCATGCTTTCGTGGATGCCATGGCCACCTGCTACTTCTTGCTGGTGGAGAGAAGGATACAGGAGGAGAAAAGTGTTGGAGACAACTCTCTTCTGGTCCGGGCTCTGGACCGTTTCCACCGCAGGCTCCAGGCCGTGGCCAAACTGCTGCCTGGATCTGCTGTGCCCAGCCAAGGGACTGAGATCGTGGTGCGAGCAGCCAGGGAGAGGATCAAGCAGTACCTGGCAGCCCTGCAGAGGTTCTACCTGGACAGCCTGAGAGACGTGAGGCAGGCCCTGGCAGCCCCTCGGCTGGGTGGAAGCTCAGCTGGAGGGGGCTCTCATCTGGCGGGACCAGCCACTGGGAAAGATGCTCCCGCCAGCCTGCcagagctcctctcctctctgtctgcctccatTCTCAATCAGATCAAGTCAGTGCTGGCATCAGTGCACCTCTTCACCGCAAAGGACATCACCTTCTCCAATAAGCCTTACTTCAAGGGGGAGTTTTGCAGCCAGGGTGTGCGTGAGAGCCTTGTGGTTAACTTCATTAAGTTTGTGTGCCAGTCCTCACGTCAGTTCTGTGAGAGTGCGGGAGACAGGGGCGGCTCTACAccccctgccctcctcctgctgctgtcaCGCCTCTGCCTGGAGTATGAAACCTCCACCATCACCTACATCCTCACCCTCACAGACGAGCAGTTCCTCGTGCAGCATCGTTCTCCTGTAACTGCAGTCGCAGCTTTATGTGGAGAGGCCAGAGAGGCAGCACAGAAGCTACTGAACCATTATGTTAAGGTTCAGGGCCTGATCATATCCCAGATGCTGAGAAAGAGTGTGGAGACTCGAGACTGGGTCAACACCATCGAGCCACGGAATGTCCGTGCTGTGATGAAGAGAGTGGTGGAGGACACCACCTCCATTGATGTGCAGGTGAGTCTTCTCTATGAGGAGGGGACGAGGAAAGCCCACAGCAGTGACTCCAGCAAAAGGACCTTCTCTGTCTACAGCGGCTCTAGGCAGCAGACCCGCTACGCCCCCAGCTACACACCCAGTGCTGCTATGGATACCAATTTCCTGAGTAATATACACAAGCTCTTCTCTGAGCGGATCGACATCTTCAGTCCTGTGGAGTTTAACAAAGTCTCTGTGTTGACAGGGATCATAAAGATCAGTCTGAAGACGTTCCTGGAGTGTGTCCGCCTGCGTACCTTTGGTCGTTACGGCCTGCAGCAGATCCAGGTTGACTGCAACTACCTGCAGATGTATCTGTGGCGCTTTGTCTCCGATGAAAACCTGGTCCACTTCCTACTCGATGAGATAGTTGGCAGCACTGCCCACCGCTGCCTGGACCCCGCTCCCATGGAGCAGAGCGTGATTGAGGTCATCTGTGAGAGAGGTTAAAGGCCAGAGATCACATTGGTTGAGGAACTGGTGAATTGTGATATTGAAATTGAAGAGTGTGTAACAGGTTAAAACCAAAAAAAGGCCTTGAAGTTAACTGAACATTGAAGATTGGACAAAGAGGGTTTTTTTCTTGATACTCTCGATTCCCATGATGTAAATGTGGGTCAGGAGGGGGATTGAGGTTACTATGAATGATGTGATGTTTGGGTGGGATGCATCTATATTAATTTGATTAGTAATTACAAACATTATCATGTGGTAATATGATTTGAATTTAAAAAATCTAACTCATAAAGGATGTAAAGCAGAGTTGTGCCTCCTGCCTTCAAGGACATGTGATCTCAATTTGCACACGTAATTCTGCATTTTAAATTCAAGGACATGATCTCAATTATTTGTATTTCAATTGTTTTCCCTTTGCACACTTAATCTTGCAATTTAAATTATAATACTTATGTTACAATTAATCATCCCTGTAAAGTATGTTATATAAAGTGTCAGTATTCTAAG
>XM_036990394.1
GAGTCATTGCTGCCACCTACTGGCTCGTTTATCACGGGCTTCTCATCGGGACATGTACGGGAACTTCTGTTTGATTTAGTGGCGAATAGCTGGTTTTCTGTTTAGCTGGCGGTTACATTTAGCTGTTATTTGGTCTGTCCTGCAATTCATAACAATTTCGCTGGTATTCAGTTTAAATGGACGGGGATATTTGTGCTACGGCCACCACACCACCTGACTCCGACCCAGCGCGGAAGCGCCGAGTGCACGGTATGTTGAAGCTCTATTATGGGTTGAACGAGGAAGGAAAGACCGTGGATCAAGCAGAGTCGATGAATCCTTGCGATATAAACGGCACGCATTTCGATCCTGAGGTGTATCTCAACAAGCTTAGGAGAGAATGTTCCCTTGGAGAGCTGATGGACCAGGAGACCTGCATGGTGAAACAGATCCGCTCCTTGGACAGTGACATGCAGACATTGGTGTATGAGAACTACAACAAGTTCATCTCTGCCACAGACACAATCAGAAAAATGAAGAATGATTTTAAGAAGATGGAGGACGAAATGGATTGTCTCTCTACTAACATGGCTGCTATCACAGAGTTCAGTGCACACATCAGTGGGACTCTTCAGGACCAGCATGCACAGATAACCAAACTGTCAGGAGTCCACACTCTCCTTCGAAAGCTGCAGTTCCTGTTTGAGCTGCCTGCCAGGCTGAATAAGTGTCTGGAGCTACAGGCTTATTCCCAGGCGGTGAGCTCCCATCGTCGTGCCCGCTGCGTGCTGCAGCAGTACAGCCACATGCCCTCCTTCAGGGGCATCCAGGATGACTGTCATGCCATCATGGACAAGCTGGCACAGGAGCTTAGGCAGAAGTTCAGAGATGGAGGTTCGAGTGCGAAGGACCTTTCAGAGTGTGTGGAGCTTCTGCTGCAGCTGGATGAGCCAGCAGAGGAACTGTGTGACAAGTTCCTGATCCACGCCCAGTCACGACTGGAAGCAAACCTCCGAGGACTGGAGGCGGAGCTAAGACCACCATTGTCCTCTGGACCCACATCAGTGATAGATCCCTCCATTGGCCCTGCCCGCAGACTGTCAGCTGCACCCACTGCTGGATCTCCCACTGACCCCACCTCTCCAGGcaatcccttcctctcttccagcTCAAGGACTGATATTCTGGAATTCATAGACAGAGGTTGCAATGAATTCGTCAGCAGCCTTTGCTTGGTCATTGCCTCGTACCAAGAGTTGTTTGTCAACCGTCCACAAGAGGGTGAGCTGGCCTCCAAAAACATCCCCCATATGGCTATTGGCAAGCTGCATGCTTTCGTGGATGCCATGGCCACCTGCTACTTCTTGCTGGTGGAGAGAAGGATACAGGAGGAGAAAAGTGTTGGAGACAACTCTCTTCTGGTCCGGGCTCTGGACCGTTTCCACCGCAGGCTCCAGGCCGTGGCCAAACTGCTGCCTGGATCTGCTGTGCCCAGCCAAGGGACTGAGATCGTGGTGCGAGCAGCCAGGGAGAGGATCAAGCAGTACCTGGCAGCCCTGCAGAGGTTCTACCTGGACAGCCTGAGAGACGTGAGGCAGGCCCTGGCAGCCCCTCGGCTGGGTGGAAGCTCAGCTGGAGGGGGCTCTCATCTGGCGGGACCAGCCACTGGGAAAGATGCTCCCGCCAGCCTGCcagagctcctctcctctctgtctgcctccatTCTCAATCAGATCAAGTCAGTGCTGGCATCAGTGCACCTCTTCACCGCAAAGGACATCACCTTCTCCAATAAGCCTTACTTCAAGGGGGAGTTTTGCAGCCAGGGTGTGCGTGAGAGCCTTGTGGTTAACTTCATTAAGTTTGTGTGCCAGTCCTCACGTCAGTTCTGTGAGAGTGCGGGAGACAGGGGCGGCTCTACAccccctgccctcctcctgctgctgtcaCGCCTCTGCCTGGAGTATGAAACCTCCACCATCACCTACATCCTCACCCTCACAGACGAGCAGTTCCTCGTGCAGCATCGTTCTCCTGTAACTGCAGTCGCAGCTTTATGTGGAGAGGCCAGAGAGGCAGCACAGAAGCTACTGAACCATTATGTTAAGGTTCAGGGCCTGATCATATCCCAGATGCTGAGAAAGAGTGTGGAGACTCGAGACTGGGTCAACACCATCGAGCCACGGAATGTCCGTGCTGTGATGAAGAGAGTGGTGGAGGACACCACCTCCATTGATGTGCAGGTGAGTCTTCTCTATGAGGAGGGGACGAGGAAAGCCCACAGCAGTGACTCCAGCAAAAGGACCTTCTCTGTCTACAGCGGCTCTAGGCAGCAGACCCGCTACGCCCCCAGCTACACACCCAGTGCTGCTATGGATACCAATTTCCTGAGTAATATACACAAGCTCTTCTCTGAGCGGATCGACATCTTCAGTCCTGTGGAGTTTAACAAAGGATCATAAAGATCAGTCTGAAGACGTTCCTGGAGTGTGTCCGCCTGCGTACCTTTGGTCGTTACGGCCTGCAGCAGATCCAGGTTGACTGCAACTACCTGCAGATGTATCTGTGGCGCTTTGTCTCCGATGAAAA

Function

NR:

description
vacuolar protein sorting-associated protein 51 homolog

GO:

id name namespace
GO:0048193 Golgi vesicle transport biological_process
GO:0007030 Golgi organization biological_process
GO:0044241 lipid digestion biological_process
GO:0015031 protein transport biological_process
GO:0010517 regulation of phospholipase activity biological_process
GO:0006869 lipid transport biological_process
GO:0005794 Golgi apparatus cellular_component

KEGG:

id description
K20296 ANG2, VPS51; vacuolar protein sorting-associated protein 51

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618614.2 False 3206 mRNA 0.50 11 44294538 44301656
XM_036990394.1 True 2568 mRNA 0.53 11 44295160 44301656

Neighbor

gene id symbol gene type direction distance location
tm7sf2 tm7sf2 coding downstream 293 44288348 ~ 44294245 (-)
LOC110533992 NA coding downstream 35625 44248264 ~ 44258913 (-)
LOC110533990 LOC106603140 coding downstream 56660 44219047 ~ 44237878 (-)
LOC110533991 pura2 coding downstream 75582 44213255 ~ 44218956 (-)
LOC110533117 stx5 coding downstream 87693 44199178 ~ 44209264 (-)
LOC110534000 frmd8 coding upstream 1949 44303605 ~ 44308978 (-)
LOC110534001 LOC106603132 coding upstream 10497 44312153 ~ 44319559 (-)
LOC110534010 NA coding upstream 209833 44511489 ~ 44513298 (-)
LOC110534015 LOC106603119 coding upstream 324266 44625922 ~ 44636337 (-)
LOC110534016 LOC106603120 coding upstream 338589 44640245 ~ 44648066 (-)
G893280 NA non-coding downstream 8579 44285108 ~ 44285959 (-)
G893275 NA non-coding downstream 24091 44270231 ~ 44270447 (-)
G893269 NA non-coding downstream 51994 44242268 ~ 44242544 (-)
G893265 NA non-coding downstream 55719 44228962 ~ 44238819 (-)
G893287 NA non-coding upstream 18614 44320270 ~ 44323970 (-)
G893253 NA non-coding upstream 46134 44347790 ~ 44349638 (-)
G893325 NA non-coding upstream 90419 44392075 ~ 44392427 (-)
G893391 NA non-coding upstream 181618 44483274 ~ 44483554 (-)
G893394 NA non-coding upstream 185364 44487020 ~ 44487986 (-)
G892965 NA other downstream 583569 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 610618 43681449 ~ 43686604 (-)
LOC110533954 LOC106603192 other downstream 1046903 43183815 ~ 43248006 (-)
LOC110533946 mpp1 other downstream 1224380 43057611 ~ 43070230 (-)
G893541 NA other upstream 466794 44768450 ~ 44769072 (-)
LOC110534025 LOC106603111 other upstream 709673 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 1445659 45747090 ~ 45751405 (-)
G894917 NA other upstream 1615623 45917279 ~ 45918339 (-)

Expression


Co-expression Network