LOC118966633 (LOC106603129)


Basic Information

Item Value
gene id LOC118966633
gene name LOC106603129
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44330184 ~ 44340628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036989352.1
ATGAATCCCATCACCACCAACCTTCCCATTCTGAATCTCACCACCATCCCTCCTCACCTgcagacacacaccaccaccatcatcaccatgatGATCACCACAGCCCATCAAGCCCTTCTAAGGAGAACTCTCCTGATGCTTCAGGAGCAAAATGAGGATCTGCACCACAGTTTGCTCCAGACCGCCGTGCGAATGGAGTGCATGGGGACTGAGTTTAAGAGCAGTCACCAGCTCCTTGAGTCAGAACTACAGAACACACGTGTGGAGCTGAGTAGCCTCCTGGACAAATTCAAAAGaCTGAGGGATAACTACTCCTACACTCAACAGACCAACAATCTCTTGGAGCGGAAGCTTCATTCAGTGGCTCAGAGTATGGACGGGGAGCGTGAGCATCTGAACCAGCGCATCACAGCCCTGACAGATCAGCTGTCCTCAGCCAAGACCACCATCCACAGCATGGAGACTATTAACGTAACATCCTTGCTACAGGAAGCCCTCGACAAACATTTCCACCCAGATGATTCTGTCAATCAATTCCTTCTCCCTGTTGCCCCCCCTCCAGTCCAATTCATGGATAGTCATCATTATGGAAAGGTCACCACCAAAGGGGAAGACCTATCGCTGGGAACATTGCCAGAAGAGGAGGAATCTGATTGGTCGGAGATGGGGGATGAGGCTCCAAAATGCGTTCTGAGGTCAGCGGGAGGTCATCATGGTGGCACAGCGTTTCAACCGTGGAGACAGGAGCGTATTTGCTGggcaggacagggagagggagacacagagagtgagTCAGGGGGTGAGGAGATTGTCAGACAACACCCTCCCCACTCCCTACAGATCCCCCATCTCCACGTCACCATTCATGAGACCTTACCAGCCCCCATGGATGATGTCACCCTCACCACCAGCTTCAAGAACTCAGCTTATGGCCCAACAGAGGAGGATGGGTACAGGGTCACTGCGAGCCGCAAACTGGGCTCTCCCATCCGCATCCTGTCAGCCAGTCTGGATGAGATTCCCTCCTCCAGGAGACAGAAGCACAGGCAGGAGGAGCAGCATGGCCAGCTGAAGGGCACAGAGGCCATGATGGACCTCCACCAACCAGAGGACGGTACCATGGATGACTCAGAAGATGAGATCATCCGGAACTGGAGGACAAGGAGCGAGGACATGGGTGTGGATGTCAGGGAGGTAGATCCTGGCAGCAGCTTGGACAACCTGCAGTCGGCCCAAAATATGCTCAACCACTTCATCTGCCAGCTGCAGCCCAGTGTGGAGGAGGGGCGCGGCTGGACCGGTGGGGCGCCGGACGAAGTGCTGAATGGGGAGAGAACACAGCTGTGACACCTGATCTCTTCGCCGAGACACAGATGTGGACAGGTGTCGACTGGGTTGGTGGTTACTGAAGTAAGCATGATTTGGATAACATTATTAGTATTTTGAACATAAAGCAACAGAATTGACCACTtgaataataatacttttaattATTACAATTTTCATCTGATTTAAAACGTTTTCAGGCCTAAATAACAGGGCCCCAAATAGTATTCATCATTAATAACAAGTAAGATAAAGAAACTGTTTCAAACATAGTGTTTTCCTCTTTTTGAAGATATTAAGTAATTAACGCCTGCAAAGAGCTGTAATGGCAAGCGGCCCAAGTTGGAGATCCTCAGCTCCACATTTTAATATTTGTGATATTTTTCTCGGTTCATAATCAAAGACATGTCCTGAGGTCTTTTTTCCCCCAGTATGCAAGGATTTGGCTTTGATGTCCTCCAGAGGTAACATCAAACAAAAAACATGTGGCTTTGATTTTCCCTGTTCCCTCACTCTGGGAAACCCTGTCCTAGGCTTCACTACTGTCTCATCATAGCAGAGCACAGCCGAATCCCACCCTTGTCTCTGGATTATATAATAATAGATCCTTCCAGAACCTCTTGTGCATAATTCATCATAACGGTTTGTGTTTTTCCCTCCGTGCATGTTAGATAAGAAGAGGAGTGTTGCATAGAATTGAGGTCCTTTAGGTAAAGATGTAAGATGTGTTGATAGACTTTGTTTATCCTCATAAATTAATCCACCTGTAGACATAGACATAATACCAGGTCTAACCTGTACAGTGTATAGTCAAATATTTAATAACATACCGTATAAAGAGTGTCCGTTGGACCGTCACTGTGGATCGGGAAACAATGTATTTTAAGTCAGGTTTTTAATTGATGGAAATCAAATGAAAACAGAAACATTTGATACGGTTTTTAGGATTTTTGCTGATGGATCTGTGTGGTCTGGTGTGAATGGTTCCAACTGCTAGATAGTTTCCTCCTTTCATggggggaaatatatatatatatatttattcttCTTGCATGCAAACTATGTTTTATCTTGAAAATATTGATGTTTATGTACATGcaaactacagtatgttctatatTTTAATATTGATGTTTGTGTACATGCTGTAGTCTCCATATTGATATTATGGCAAAAAACCACAAGACAAAATGTAAATCTGAATCACCATTTCTCATTGTGGTCACCAGAGGCATGCAACAGTCAGTTGAGAGATGTATGATATAAGCAATGTTATGCCACATGAAATGTCTGTTTTGTCCTGTGTGAGGGATTTTCCTCTGGTaaccacagtaaaaaaaaaaaaaaactgagtgtacaaaacattaggaacaccttactaATAGTGAGTTTCACCTCCTttagccctcagaacagcctcaattcctcaggtcatggactctacaaggtgtcgaaagcgttccacagggatgctggcccacgttgactccaatgtttcaaAATTCAAAAAGGCAGtcgcacatctgagcaatcttttttgcaggtgcatggtatcAGTTGATGAAAtgagaaaagaagaagaaacccgcacactgctctttaataagctcCACGTTTGAGCAGATGGTCGAGAAATATCGACTCCCAAAGCAGGACTTTTTCCACTTCCTACAAGTAAGACATTATTTTCTGAAGAGCACCACCTTAATTGgcaaccctgatatgtctgtcattgaaagaatgcttttttttccacaaaggaaaatgtctgtaagtctgttttatgatgctttaaggtccttttctgcTGTAGACACACAGAGGGCgaaacaagtgtgggagaaaGAATTGTCTGTTACTATTGACAAAGAGATGTGGGAGGACATTTGGAAATATGCAAAAACAGTATCTATATGTAATCGTACTAGAGCAATCCAATTAAGTATAATACACAGATTGAatatatccacaaatctcagacatgcttttagccccacttcctcttcccctcagtgtcttaaatgtaaaactgatacaggcaccctaacacattgtttatggtcatgtaccaAAATACAAAGATACTTGTCTGGTGTTCTGCAAGAAATTGAAAAGATCCTAGGGGTTGATCTAGAATTGGACCCAATTTCTTTACTGTTGGGTCTCCCTAGTAGGCATGTTACTTCTGTGGGTAAGAGGAGGCTTTACAACATCCTTACCTTCGCAGCGAGGAAAAACATccttttacagtggattagtgataagattccttctattaaagattggcataagatactatttgaatgggtgcctctggaatatctgacatgtacattgcattctaaaacagacCAGTTCTACAAAGTATGGGAACCTTATCTAAATTACCTTAGAATAGTGGTGATCTATGTATTTCAGAATTACACTGTACCTTCCATGTGTGAAACCTAACTTCTTggtttaaactgagctttttttgtttaatttctgtttgtattcttgtttaaaatgtatgtattgagagacgcaatgatggggatggggtgagaggtacaccataggtacacttca

Function

NR:

description
PREDICTED: filaggrin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036989352.1 True 3897 mRNA 0.43 5 44330184 44340628
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110534002 LOC106603131 coding upstream 4498 44320239 ~ 44325686 (+)
LOC110533999 NA coding upstream 41883 44287536 ~ 44288301 (+)
mrpl49 mrpl49 coding upstream 44644 44283818 ~ 44285540 (+)
LOC110533994 cnih2 coding upstream 61207 44259513 ~ 44268977 (+)
LOC110533985 LOC106603139 coding upstream 206414 44108333 ~ 44123770 (+)
LOC110534003 LOC106603128 coding downstream 5486 44346114 ~ 44349641 (+)
LOC110534004 LOC106563461 coding downstream 10024 44350652 ~ 44377640 (+)
LOC110534006 LOC106603126 coding downstream 61147 44401775 ~ 44439475 (+)
LOC118966782 NA coding downstream 88438 44429066 ~ 44429425 (+)
LOC110534007 LOC106603127 coding downstream 108496 44449124 ~ 44465380 (+)
G892157 NA non-coding upstream 25605 44301794 ~ 44304579 (+)
G892132 NA non-coding upstream 59554 44270427 ~ 44270630 (+)
G892073 NA non-coding upstream 76200 44253483 ~ 44253984 (+)
G892128 NA non-coding upstream 83043 44246595 ~ 44247141 (+)
G892125 NA non-coding upstream 88597 44240697 ~ 44241587 (+)
G892185 NA non-coding downstream 57238 44397866 ~ 44398095 (+)
G892208 NA non-coding downstream 146453 44487081 ~ 44487857 (+)
G892245 NA non-coding downstream 149022 44489650 ~ 44489949 (+)
G892187 NA non-coding downstream 261883 44602511 ~ 44603878 (+)
G892279 NA non-coding downstream 268309 44608937 ~ 44609138 (+)
LOC110533983 LOC106603147 other upstream 248774 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 389627 43938412 ~ 43940557 (+)
G891856 NA other upstream 586694 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 589154 43732222 ~ 43741030 (+)
G891847 NA other upstream 617102 43712545 ~ 43713082 (+)
G892191 NA other downstream 314930 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 668206 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 1213609 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 1281629 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1560417 45898515 ~ 45901940 (+)

Expression

LOC118966633(LOC106603129) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC118966633(LOC106603129) Expression in each Bioproject

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LOC118966633(LOC106603129) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network