LOC110534013 (LOC106603121)


Basic Information

Item Value
gene id LOC110534013
gene name LOC106603121
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44574931 ~ 44601953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618633.2
ATTTTTTAACCCGGGCCAATTTTACACTTCGCCAACCACATCACTTTTGTTGTTTGACTACGGTAGTACATTCGTAAGTCTACTAGTGTCTATTATACATCCAGAGCTGATGAAGAATTCCTTCCACTATGTTCAGGTGTCAAATTGTCACACTGGTTGCTTGAGGACATCGACTTGTCTTTGAAAATCGTCTTGAGCACTGTTTTCTATGTTGTTTTGTTGCTCTATGTATTGCATGTCGCCGCCTAGTGGTTCCCACTTTTAACGGAGCGCACAACACGACGACGGACACGACTTCAGAGCCAGTCGTTTGCCACCGCCTCAACTCTTTGGTTTAAACCTGCTTCTGCTGTCACCGACCTTTCAATCTATCTACCGATCTGAATGCTGTAAGTGCTGTCGTTACTTCTACACCCACCCACTCCCCATTTGTAATCTTGTGTGATCTCAAGGCATGGATGTCACGGTGCGCCTTGGCATAATACAATATTGTAATCCGAATTGAGCACAGTCTGCGAGGGTTTAGCCCTGGTTTACACAATCCGCTAATTTGACATTCAAGTTGTTGTAGGGGAAAGTGTAGCCTAGTGCAAGCTGCTTGTCGCGAAAGTGGAAACCGACCTGATCGCAAACAGATATGTTTTGACCGGTGAGGGACCGACTCCGGAATGAAGACGGCAGTACAGACTGGGAGACCGCGGCCGTTCCAGCGGTTCTGCTGCTGTGGAGTTGGGCTTCTCGCGGTCATTTGGCTCTCACAGTTCGCGCACGTGATAGAGCCGGAGTCATCCGGGTCTCATTCTGGAGAGGATGGCGTTCCAGTCCGTTCCAGACGCAGGCTGATGCAGGAAGAGTGGACAGAAGACAACCAGACCCTGGACCTTTCTAGACCAGccatCCATGAGTTTCCAGAAGATATATTTACCAAGGaggaactgaaaagaggagcagtGCTGTTACAtgtgctgtgtGCTATCTACATGTTCTACGCTCTTGCTATTGTCTGCGATGACTACTTTGTTCCTTCCCTGGAGAAGATATCAGAGAACCTGCAGCTCAGTGAGGATGTGGCAGGGGCAACCTTCATGGCTGCAGGAAGCTCAGCCCCAGAGCTCTTCACCTCTCTCATTGGTGTGTTTATCACTAAAGGAGACGTGGGGGTCGGCACCATCGTGGGCTCAGCGGTCTTCAACATCCTGGTCATCATTGGTGTGTGTGGCATCTTTGCGGGCCAGACGGTGGTTCTAACGTGGTGGTCTCTGTTCAGGGACTCCACCTACTACATCTTCTCTGTGCTGGCTCTCATCCTGGTTATCTTTGATGCAAAAGTTGTCTGGTGGGAGGCCGTGCTTCTAATGACTATGTATGGAGTTTACATTGTTATCATGAAGTTCAACTCCCAGCTCTTGGGGTGTGTGACTCGTTGTTTTGGTGGTCCGGGTCAGTGTTGCCTGGGTAGTGAGGGACACCGAGATGAGGAGATGGCAGAGGACGGACCCACCTGCAACACCAACATGGTGCTGCTCAGGAAAGGCCAACCCCAGGGTCAGGAGTTTCCTCCGGTGATGATGGTGGACGAACTCCTCATCCTCAACCCCCACCAATTGTCCTTTTCCGAGGCTGGCCTGCGCATCATGATTACCCCCCACTTCTCCCCTCGCACCAGGCTCAGAATGGCGGGCCGCATGCTCATCAGTGAGagacagaggttgATCAGGAGTCCCAACAGCCAGCTGGATGGAGAGACCAGTGCAGGGGCAGGGGGCACCCCTCTGAAGGGTTCTGGAGGCCTGGAGAATGGGGGCAGTGTGGAGAGACAGACCCCCGAGGGGGCAGGGCTAGGGGACGCAGGGGAAAAGCCAGGGGCGGAGGGTTGTCaggctgaggaagaggaggatgatgatgggcCGTTCAGGCCTCTGCACTGGCCAGatGGTTGCTGTGCGCGGGTCAAGTGGCTGATCTCGTGGCCCCTGGGCCTGCTGCTGTACTGCACTGTGCCTAACTGTGTGTTCCCCCGCTGGCACCGCTGGTTCATGGTCACCTTCTTGGCCTCCACCCTGTGGATAGCCATCTTCTCCTACCTCATGGTGTGGATGGTCACCATCGTCAGCTACACACTAGACATCCCAGACTACATCATGGGTATCACCTTCCTGGCAGCGGGCACCAGCGTGCCAGACTGCATGGCCAGCCTCATTGTAGCTCGGCAAGgtATGGGGGACATGGCTGTGTCTAACTCCATTGGCAGTAATATCTTTGACATCCTGTTGGGGCTGGGTTTCCCCTGGGCTCTGCGCACTCTGGTGGTGGACAACGGATCGTCGGTCTACATTAACAACAAGGGCCTGGTGTATTCTGTTGTCCTGCTGCTGGCCTCTGTCTTCCTCACAgtgaTGAGTGTTCATCTGAACCACTGGAAGCTGGACCGCCGGCTGGGCCTGGGGCTGATATTCCTCTATGCCATCTTCCTGCTCTGCTCCATCTTCTTTGGGCAGATGTGAGGCTGACACTGGGGGTCAAAGGTCAACCCTGATTCGCTTTCCTGTAAGCTGCCACGTCCAGGAGTCCTCTGTCTCCCAGAGGTCCTCGCCCCTAAAACGAAACAACAGTCTCGGCTACATTGTGCTAAAAGTTACCGTGATGTAGCACAGACAGAATATGCTCGAATGACgttgcacgcgcacacacacacacacacataatatccAAACACTCACTGTAGTGCAGTGTTTTaatacacagaaacacataatGTTCAGCTGTCACCATGGAGAAATAATACAATAGACTAGTACTCTTGTTTCTTTAACCTTAAGTTTGGAACAGCCATGTTTGTTTTGAATGTACGCCCTAGCTGATGTTACCTTGTTGTGTGGGGATTCAGTATGTACGTTTGTGCTAATGTGTTGCAGTGCTGGGGTACAGTGGAGCATAGAACTGTCAGTCAGGAACTAGGGACATAGCAATAGGACAAATGGGCAACATAGACTTATGATGGAGAAAATGTTAATAAGAGATGCAGATTATTGTGACTATAACTGACCGAGTTCCTCCAAAATGAGGTTTTATGAATGATTATTTTGTTTGTTGCCAAGTATTGTTTCAAACGAAGTAAATAATAGGCTACCGTGAAATCTATGATTTGTAGCGTTTTTAGAAGTGTTACTACTATTGGCGACATGTTTCTATGAGTGTCATAACCTGATTAAATGCGTACGGGTCTGTTGTAACAGTTCACTATGCTAAAGTATGATcaatgtttgtaaaaaaaaaaaaaatctttctgTACATTTTTGTTTTTCAGTATTACTGTATAACAATTATTAAGTCAACAAGACCATACTTTTTACTGTTTCTAAATGTTTACTAAATATTTTACATAGTTTTTCAAAAAATGAATGTCAGACAGAGACTAGATTTGTGATGTTTTTGATATTTGTAAGAACTAGATAATATTCTTCCTATGATATTTGTGCGAACACCGTATGTTGTAACTGAAAGACgatgtatatttttttgtcactTGGTAAAGTGATGGTAAAGAAGACTGACGCGTCAGATCAGCACACTCCACCTAGATCTAATGAAAGG
>XM_021618634.2
TTTTTTAACCCGGGCCAATTTTACACTTCGCCAACCACATCACTTTTGTTGTTTGACTACGGTAGTACATTCGTAAGTCTACTAGTGTCTATTATACATCCAGAGCTGATGAAGAATTCCTTCCACTATGTTCAGGTGTCAAATTGTCACACTGGTTGCTTGAGGACATCGACTTGTCTTTGAAAATCGTCTTGAGCACTGTTTTCTATGTTGTTTTGTTGCTCTATGTATTGCATGTCGCCGCCTAGTGGTTCCCACTTTTAACGGAGCGCACAACACGACGACGGACACGACTTCAGAGCCAGTCGTTTGCCACCGCCTCAACTCTTTGGTTTAAACCTGCTTCTGCTGTCACCGACCTTTCAATCTATCTACCGATCTGAATGCTAGCCGGAGTCATCCGGGTCTCATTCTGGAGAGGATGGCGTTCCAGTCCGTTCCAGACGCAGGCTGATGCAGGAAGAGTGGACAGAAGACAACCAGACCCTGGACCTTTCTAGACCAGccatCCATGAGTTTCCAGAAGATATATTTACCAAGGaggaactgaaaagaggagcagtGCTGTTACAtgtgctgtgtGCTATCTACATGTTCTACGCTCTTGCTATTGTCTGCGATGACTACTTTGTTCCTTCCCTGGAGAAGATATCAGAGAACCTGCAGCTCAGTGAGGATGTGGCAGGGGCAACCTTCATGGCTGCAGGAAGCTCAGCCCCAGAGCTCTTCACCTCTCTCATTGGTGTGTTTATCACTAAAGGAGACGTGGGGGTCGGCACCATCGTGGGCTCAGCGGTCTTCAACATCCTGGTCATCATTGGTGTGTGTGGCATCTTTGCGGGCCAGACGGTGGTTCTAACGTGGTGGTCTCTGTTCAGGGACTCCACCTACTACATCTTCTCTGTGCTGGCTCTCATCCTGGTTATCTTTGATGCAAAAGTTGTCTGGTGGGAGGCCGTGCTTCTAATGACTATGTATGGAGTTTACATTGTTATCATGAAGTTCAACTCCCAGCTCTTGGGGTGTGTGACTCGTTGTTTTGGTGGTCCGGGTCAGTGTTGCCTGGGTAGTGAGGGACACCGAGATGAGGAGATGGCAGAGGACGGACCCACCTGCAACACCAACATGGTGCTGCTCAGGAAAGGCCAACCCCAGGGTCAGGAGTTTCCTCCGGTGATGATGGTGGACGAACTCCTCATCCTCAACCCCCACCAATTGTCCTTTTCCGAGGCTGGCCTGCGCATCATGATTACCCCCCACTTCTCCCCTCGCACCAGGCTCAGAATGGCGGGCCGCATGCTCATCAGTGAGagacagaggttgATCAGGAGTCCCAACAGCCAGCTGGATGGAGAGACCAGTGCAGGGGCAGGGGGCACCCCTCTGAAGGGTTCTGGAGGCCTGGAGAATGGGGGCAGTGTGGAGAGACAGACCCCCGAGGGGGCAGGGCTAGGGGACGCAGGGGAAAAGCCAGGGGCGGAGGGTTGTCaggctgaggaagaggaggatgatgatgggcCGTTCAGGCCTCTGCACTGGCCAGatGGTTGCTGTGCGCGGGTCAAGTGGCTGATCTCGTGGCCCCTGGGCCTGCTGCTGTACTGCACTGTGCCTAACTGTGTGTTCCCCCGCTGGCACCGCTGGTTCATGGTCACCTTCTTGGCCTCCACCCTGTGGATAGCCATCTTCTCCTACCTCATGGTGTGGATGGTCACCATCGTCAGCTACACACTAGACATCCCAGACTACATCATGGGTATCACCTTCCTGGCAGCGGGCACCAGCGTGCCAGACTGCATGGCCAGCCTCATTGTAGCTCGGCAAGgtATGGGGGACATGGCTGTGTCTAACTCCATTGGCAGTAATATCTTTGACATCCTGTTGGGGCTGGGTTTCCCCTGGGCTCTGCGCACTCTGGTGGTGGACAACGGATCGTCGGTCTACATTAACAACAAGGGCCTGGTGTATTCTGTTGTCCTGCTGCTGGCCTCTGTCTTCCTCACAgtgaTGAGTGTTCATCTGAACCACTGGAAGCTGGACCGCCGGCTGGGCCTGGGGCTGATATTCCTCTATGCCATCTTCCTGCTCTGCTCCATCTTCTTTGGGCAGATGTGAGGCTGACACTGGGGGTCAAAGGTCAACCCTGATTCGCTTTCCTGTAAGCTGCCACGTCCAGGAGTCCTCTGTCTCCCAGAGGTCCTCGCCCCTAAAACGAAACAACAGTCTCGGCTACATTGTGCTAAAAGTTACCGTGATGTAGCACAGACAGAATATGCTCGAATGACgttgcacgcgcacacacacacacacacataatatccAAACACTCACTGTAGTGCAGTGTTTTaatacacagaaacacataatGTTCAGCTGTCACCATGGAGAAATAATACAATAGACTAGTACTCTTGTTTCTTTAACCTTAAGTTTGGAACAGCCATGTTTGTTTTGAATGTACGCCCTAGCTGATGTTACCTTGTTGTGTGGGGATTCAGTATGTACGTTTGTGCTAATGTGTTGCAGTGCTGGGGTACAGTGGAGCATAGAACTGTCAGTCAGGAACTAGGGACATAGCAATAGGACAAATGGGCAACATAGACTTATGATGGAGAAAATGTTAATAAGAGATGCAGATTATTGTGACTATAACTGACCGAGTTCCTCCAAAATGAGGTTTTATGAATGATTATTTTGTTTGTTGCCAAGTATTGTTTCAAACGAAGTAAATAATAGGCTACCGTGAAATCTATGATTTGTAGCGTTTTTAGAAGTGTTACTACTATTGGCGACATGTTTCTATGAGTGTCATAACCTGATTAAATGCGTACGGGTCTGTTGTAACAGTTCACTATGCTAAAGTATGATcaatgtttgtaaaaaaaaaaaaaatctttctgTACATTTTTGTTTTTCAGTATTACTGTATAACAATTATTAAGTCAACAAGACCATACTTTTTACTGTTTCTAAATGTTTACTAAATATTTTACATAGTTTTTCAAAAAATGAATGTCAGACAGAGACTAGATTTGTGATGTTTTTGATATTTGTAAGAACTAGATAATATTCTTCCTATGATATTTGTGCGAACACCGTATGTTGTAACTGAAAGACgatgtatatttttttgtcactTGGTAAAGTGATGGTAAAGAAGACTGACGCGTCAGATCAGCACACTCCACCTAGATCTAATGAAAGG

Function

NR:

description
sodium/potassium/calcium exchanger 3-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618633.2 False 3594 mRNA 0.49 17 44574931 44601953
XM_021618634.2 True 3205 mRNA 0.48 17 44574932 44601953

Neighbor

gene id symbol gene type direction distance location
LOC110534011 LOC106603123 coding upstream 1061 44526662 ~ 44573870 (+)
LOC110534008 LOC106603125 coding upstream 71377 44494158 ~ 44503554 (+)
LOC110533118 LOC106563456 coding upstream 95787 44477086 ~ 44479144 (+)
LOC110534009 NA coding upstream 97656 44467605 ~ 44477275 (+)
LOC110534007 LOC106603127 coding upstream 109551 44449124 ~ 44465380 (+)
LOC110534014 LOC106603122 coding downstream 11891 44613844 ~ 44622676 (+)
LOC110534018 LOC106603117 coding downstream 163278 44765231 ~ 44767832 (+)
LOC110534023 LOC106603103 coding downstream 391333 44993286 ~ 45003089 (+)
LOC110534027 LOC106603105 coding downstream 438808 45040761 ~ 45124746 (+)
LOC100135968 LOC100135968 coding downstream 523599 45125552 ~ 45149685 (+)
G892245 NA non-coding upstream 84982 44489650 ~ 44489949 (+)
G892208 NA non-coding upstream 87074 44487081 ~ 44487857 (+)
G892185 NA non-coding upstream 176836 44397866 ~ 44398095 (+)
G892157 NA non-coding upstream 270352 44301794 ~ 44304579 (+)
G892132 NA non-coding upstream 304301 44270427 ~ 44270630 (+)
G892187 NA non-coding downstream 558 44602511 ~ 44603878 (+)
G892279 NA non-coding downstream 6984 44608937 ~ 44609138 (+)
G892281 NA non-coding downstream 8105 44610058 ~ 44610311 (+)
G892283 NA non-coding downstream 14172 44616125 ~ 44616340 (+)
G892284 NA non-coding downstream 15771 44617724 ~ 44617966 (+)
LOC110533983 LOC106603147 other upstream 493521 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 634374 43938412 ~ 43940557 (+)
G891856 NA other upstream 831441 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 833901 43732222 ~ 43741030 (+)
G891847 NA other upstream 861849 43712545 ~ 43713082 (+)
G892191 NA other downstream 53605 44655558 ~ 44659491 (+)
G892499 LOC106603104 other downstream 406881 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 952284 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 1020304 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 1299092 45898515 ~ 45901940 (+)

Expression


Co-expression Network