LOC110534021 (LOC106603115)


Basic Information

Item Value
gene id LOC110534021
gene name LOC106603115
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44818510 ~ 44821307 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618652.2
ATGTGCGACGGTGAAACGCCCCTACTCTACCTAGAAGATGGACGTCGAGTCGCTTTAGGCATTGCGACGAGGATCACTATCTTTTATATAACAGTGCAAGTTTACCCCAGACACGCTTTTAATATAACGTTATATTAATAACAAACTTATGTTGCTGAATTTTCCAGAACATTTTTATTCATCACTGTCAGTATATTTTTCTTTCTAGCTAGCATTACGGAGTCAATTGACGTTAGCTTGCCTGCTAacgtagctagccagctaacgttagttaatTTTTTCCGCTTTAACTAACGtcagtgagctagctagctaacttgtcaATAACTAAGTTGACGCATTGTCATCACTATGATCGTAACAGGTAGGTAGCACTGCTTAAGGCTAGCTACTTATCTTTCACGTTAGACTAACTAATAGCTAGTTCAAAGAATTTGCTAGCTACTGAAGTTGCGTTATTCACAGGCGGCGCTAGCTGGTCACCGTAGTAACTACCTAGCTATGGCATCCAGGCGAGGAAATTGTAATAGCGGCGTGGATTCTCCGTTGAGTATCAATAGCACAACCGGTGGTCCTAATCGTAAACAAAGTATAATCAACAccccaaacagatctgggactactCCTTGTTATGATCGTAAAGTAGGGAAGGCTGAGTATGGGCACCAAGCATGCCAGGGCAACATGACTGTATCCTCACTGAAGACACGTCTAGCCCCGACCATTCAAACCACGTTAACCGCTGCTGTAGATACCCTCTTGGGCGAGGTAGTACTTGTACTCAACGAGACCCAACAAGAGCTGGTTAACAAGGAGCAGGAGAACGAAAGACTCAAAGTGGAATTGAGGACGTTACAGGAATGCCTTAGCAGCGCCCAAAAGTTAATCGACCAGTTGCAAATTCCTTTCCCCGGTGCACAGACCATGGGTCAATCGGTTTTTGCCCCGTCTCTCACATCTATTGGCTCTATGACCACAGCTATGGACAGGGACCGCCAGAGCAATCGTAATGTGAACGGTGCGGACGGCCGGTGTGTTTCCGGGGTCGACCTAGAGATGGGTGGCTCTCTCAGTGAGTCTCTGCATGGTTATAACTCCAGGGATGACTATAAAATGTGTCAGCTCTCAATCCAATCAGATGGCTCTGTGACCAACCATTCTATGGACTCCTATGCTGCCAACACACCTAACATCTGCTCTGACCCCAGCCGGCCAGATGAGAGGCGGCAGCAGCAGGGGACCCAAGCAGTAGGACCAAGGTTTGAGATCAAAGAAGAGCAAGGGCCTGGTCCAAGTTCAGGTCCAGGGCAGACCTGCAGTAGAGGGGCAGGGCTGAGGAGTGCCGggggtgctggtggtggtggtggtggtggtgagcagACTGCCCCGAATGTGGATGATCTGGGATACATCCATGTGGTGGAGCAAGAGGGGTCATCACGCTCCAGCAGCTACTCTCTCCGCCAACCAAAACCCATGCGGCCACCTGCTGCTACCTTTGGTCCGGCTCAGGGGGGACAGGCAGGACAGAAAGTGGAGTTGAGGTCCCCTGGAGCAGTAGGAAGTGACAGCATGTCCCCAGGTAGGGCAGGAGGGGCAGCAGGACCATCCACCTCTCCaggagacccagatgcagatcgCCCCCACCATTGTCTGGAGTGTGGGAAGACCTTCCGCCTCATCTCCAGCCTGAAGAAGCACATCCGCatccacacgggagagaagccctACCCATGTGGGGTGTGTGGCCGACGCTTCCGGGAGTCGGGGGCCCTGAAAACCCACCTTCGCATTCACACCGGCGAGAAGCCCTACTCCTGCTCTGATTGCCCTAAAATCTTCCGCCACCTAGACGGCCTGCGCAAGCACCAGCGCACCCACACTGGTGACAAGCCCTACGTGTGTGCCATCTGTGGCAAGCGTCTGAGCCGACTGCAGCACCTGAAGCACCACCAGCGCATCCACACCGGAGAGAAACCCTGCAGCTGCCCCTTCTGCAACCGCACCTTCAAGGAGCCTGCGGCGCTGCGCAAGCATGTCCGCACTCATCGTGAGGAGTCTGGCAACATGGAGGCAGGCGTGGGAGACGACCCGGACCCAGAAGCCCTGGACAACATCAACAGCCTCCACCCTGCTGCCCCCTCCCCTCAGATGAGGTTTGATGAGTGGGGAGCTGAAGGGGATGATGTGGACTGTGTGTAGGATGGGCTCATCCTTCTGTCTACTGCCTACAGCATTAGAACGCGACCTTGAAAGAGTCTTCCTATTCCATTACTGTACTGTGTGAGAAAGCCTCCGTTCCTTTCCTGAGAAACAGGCTATCTACATCCTTAGTGTTGTCCAGTGACCAGGGTAGCCTATTGTTTTCAGAGACACTTCATTTGCCTGTCTGACCCTCTGCCACATCTATCATTTAGTGCTTTATAATCTTAGAAATGTGAAAGTATTTTATACAATATGAAATGTACCTATGTATCATGTCCCCCTTTCTCTCGTTGCTAATTACCTTCCTATACAACTCCCAACAACCTACCTAAACTGTGTTTGAATACTCATACTAAACATACTATTTGTGACATAAATTGAGTATGTATTATGCTTATTGTTATAGGTATGGATATAATTAAATGCCTAAAGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618652.2 True 2638 mRNA 0.50 2 44818510 44821307

Neighbor

gene id symbol gene type direction distance location
LOC110534019 LOC106603116 coding downstream 5602 44775368 ~ 44812908 (-)
LOC110534017 LOC106603118 coding downstream 67090 44655544 ~ 44751420 (-)
LOC110534016 LOC106603120 coding downstream 170444 44640245 ~ 44648066 (-)
LOC110534015 LOC106603119 coding downstream 182173 44625922 ~ 44636337 (-)
LOC110534010 NA coding downstream 305212 44511489 ~ 44513298 (-)
LOC118936697 NA coding upstream 19405 44840712 ~ 44843123 (-)
LOC110534022 LOC106603114 coding upstream 24270 44845577 ~ 44851400 (-)
LOC110533119 LOC106603113 coding upstream 57300 44878607 ~ 44978256 (-)
LOC118966783 LOC106578716 coding upstream 133117 44954424 ~ 44958833 (-)
LOC110534024 LOC106603104 coding upstream 181934 45003241 ~ 45010947 (-)
G893497 NA non-coding downstream 101956 44716298 ~ 44716554 (-)
G893477 NA non-coding downstream 163476 44654813 ~ 44655034 (-)
G893357 NA non-coding downstream 179384 44637774 ~ 44639126 (-)
G893356 LOC100194703 non-coding downstream 194706 44621421 ~ 44623804 (-)
G893508 NA non-coding upstream 132873 44954180 ~ 44959512 (-)
G893782 NA non-coding upstream 371822 45193129 ~ 45280890 (-)
G893822 NA non-coding upstream 440836 45262143 ~ 45263484 (-)
G893781 NA non-coding upstream 453167 45274474 ~ 45278522 (-)
G893834 NA non-coding upstream 466845 45288152 ~ 45288513 (-)
G893541 NA other downstream 49438 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 509577 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 609246 44199178 ~ 44209264 (-)
G892965 NA other downstream 1107541 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 1134590 43681449 ~ 43686604 (-)
LOC110534025 LOC106603111 other upstream 190022 45011329 ~ 45017446 (-)
LOC110534046 LOC107567170 other upstream 926008 45747090 ~ 45751405 (-)
G894917 NA other upstream 1095972 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 2409497 47203241 ~ 47234608 (-)
G896841 NA other upstream 3166454 47987761 ~ 47989076 (-)

Expression


Co-expression Network