LOC110534023 (LOC106603103)


Basic Information

Item Value
gene id LOC110534023
gene name LOC106603103
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 44993286 ~ 45003089 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990421.1
GGTTCCATCTTTGCTTTATGTTTTCAGATCAGCGTATATGAAAGAGACGACCGGGGGTTTGAAGCTGTCAAATAAGTTCGCGCGAGATTTCCGAATGTGTGTTTTTAATCTTTTGGGGGTGTTCTTCTTCCTCCTTGTTTGTGAAGCTGCCCTAAATTTGTTGCGGCTGCAGTCGTATTTCTAGAAAGACCGCGGTAATAGGTAGCCGTTTTAGCGGTGACCTTTAATTCAAAGTATTTATTTATGAATTGATTCAAGAAACTTGGTAGCTAGCTAAAGACTAGGGCCACCTTCTtcgttagctagctacgttagcaATAGCGGCCAGTACCGGCAGTAGCTAGTACACACAGGTGAGTGGCCTCTCCCAGGCattagctagtagctagctagcaacatctGGGTGTATCCTACAGAAAGAAGTCCGTTTTCAGTGGAGTAACCTTTTTATTTCCTGTACGAATTGTATGTATTCATAATAAACCGACCACATCTAAATATTGCAGCGATTTCCCTTATCTGATTGTATCCATCTAAACTAGCTAGGTACGTTAGCAAGCTAACTAAATGGCGTCAGATAGTGACACAGAGGAATTCTACGATGCTGCTGAAGACGTCAATTTTACTCCATCTCCTAAAGTGACACCTGCAAAGTTTGTCCTTCCCACACCTCAGGGGGTGGTAGAGAGCCCACCAGAGGACGTGGCTGTTGGGCTGGCCGCACCTGAGGCACGCCAAGATGACTCCATTCAGATCATCGACAGCATCATTGAGGAGAGCCAGAAGGGAAGTTCAGTGGAGGAGGCTcagctgaaggaggagaggaatgttGATACAAGGGCAGAGTCAGAGGGGAAGGACGAAAATGTGGCCCCTGTAGAACGAGAGCATCCTGCTATTGAAACTCAGCCTGTGGTTGAGAGATCAGAGCAGCCACAGGAACAGCAGGAAGCGTGTTCCATGGCTCTCCCAGACATCCCCAGCCTGTTGTCAGGGTCACAGGAGCACGTCCAGCCCCCAGACATCACCAGCACCCTGGGGCAACTAGACCTCCAGCCGGACCTCCCTGACCTACCCCGGGTGTCTGCAGAGGACAGGGATAGGGAGCAGAGACCAGCAGACATCCTAGACCAGGATCCCCTCACAGACAAGCCGGCTGGCTCCTCTGACCCGGGGCCTACAAAACCCCCACGGCAGTTCACTGTAGAGCCTGACATTGTGGCCAGCACCAAGAAACCTCCACCTTCACGCCCACCCCCTCCCAGCGGAGCTGCTCCTCCACGGCCACCACCCCCATCCCGGCCTGCTTTACCCCTCAGCAAGAAGTCCCAGGAGTGTATAAGGCCAGCAGGACTGGAAGGGGAGCTGGAGGAGCCGTGTGGCCTGGTGTCTCCCAGCAGCACAGTGAGGAGCATCACCAAGGATCTGCAGCACTCTTTGGACCTGGCTAGCGCCACCAGTGGGGACAAGGTTGTCACAGCACAGGAGAATGAGGATGAGCAGGCATCCAGTCCCATTGGCGACCCTCTAGGTCCTCAGCGTCCACGATCCAACTCTGGCAGAGAGCTGACTGATGAGGAGATCCTGGCGAGTGTGATGATCAAGAATCTGGACACAGGTGAGGAGATCCCTCTCATCCAGGCGGAGGAGAAGCTTCCCACAGGGATCAACCCACTCACATTACACATCATGAGGAGGACTAAGGAGTACATCACGAATGACGCAGCACAGTCAGATGATGATGACAAGGCCCAGGCTCCATTGACCGACTCTGACGGAGGGAAGCTGAAACAGAAAACCACTCAACTGAAGAAGTTCCTGGGCAAGTCTGTGAAGAGGGCCAAGCATCTGGCTGAAGAGTATGGTGAGAAGGCCGTCAACAAGGTGAAGAGTGTCCGTGATGAAGTGTTTCACAATGACCAGGATGACCCGTCTTCCAGTGATGATGAGGGGATGCCCTACACCCGGCCTGTCAAGTTCAAGGCAGCCCACAGCTTCAAGGGCCCCTTTGACTTTGATCAGGTCAAGGTGGTCCAGGACCTGAGTGGAGAGCACATGGGTGCAGTGTGGACCATGAAGTTCTCACACTGTGGGAGGTTGTTGGCAACAGCAGGCCAGGACAACGTGGTGCGAATCTGGGTTCTGAAAAATGCCTTTGACTACTTCAACAACATGAGGATAAAGTACAACACTGAAGGCCGTGTGtcgccctctccctctcaggAAAGCCTGTGTTCCTCCAAATCAGACACGGACGGTGGGGTGAGTAAGATGAGCAGTGTTCCTGAAGACCCCGATTCAGAGGACAAGAATCTCCCCTTCCGCCAAGTCCCCTTTTGCAAGTACAAGGGTCATACGGCTGACCTGCTGGACTTGTCCTGGTCAAAGAACTACTTCTTACTTTCCTCGTCAATGGATAAGACGGTCCGACTGTGGCACATATCCAGGAGAGAGTGTCTATGCTGCTTTCAGCATATTGACTTTGTCACAGCCATCGCTTTCCATCCCAGAGATGACAGGTACTTCCTGAGTGGCTCTCTGGATGGGAAGCTGCGTCTGTGGAACATCCCAGACAAGAAGGTGGCTCTGTGGAACGAGGTGGACGGACAAACACGCCTCATCACTGCTGCCAACTTCTGCCAGAATGGGAAGTACGCCGTCATCGGCACCTACGATGGCCGCTGCATCTTCTACGACACTGAGCGCCTTAAGTACCACACCCAGATCCACGTACGGTCGACCAGAGGCAGGAATCGAGTAGGACGGAAAATCACAGGCATCGAGCCTCTGCCTGGAGAGAACAAGATTCTAGTGACCTCCAATGACTCCAGGATCCGCCTGTATGACCTGCGGGACCTGTCTTTGTCCATGAAGTACAAGGGTTACGTCAACAGCAGTAGTCAGATCAAAGCCAGCTTCAGCCATGATTACTCATTCATTGTGAGTGGCTCAGAGGATAAGTACGTGTACATCTGGAGCACCTACCATGACCTGAGCAAGTTCACCTCAGTACGACGAGACCGCAATGACTTCTGGGAGGGAATTAAAGCCCACAATGCAGTAGTGACATCAGCTATTTTTGCGCCCCATCCTAACCTGATTGTCCCCCAGGAGGCGGGGGCAGAGAAAGCGGGGGCTGGGGCAGATGCAGAGTGTAAGAGCTTGGACTCTACTGACTCTGAGACCATTCCCTCAGGGGCTCTGAAGACTGATCATACAGAGGTTCTGCTCTCTGCTGACTTCACTGGTGCCATTAAGGTTTTCATCAATGTAAAAAAGTACTGAGCACTTCACCCTGAACCCTTCCTGATCTAGCCGTCAGTGTACAGTCCTTCAATGGAGGCAGAGCAACCTGCTGCCCTGCCAACGCTTCTAAAACCGGCCAATTGCCTACGGGTGAGTTCTCCTCCGGAGAACAGGGACCCTGCAGTAgaggatgaggtggaggaagTGAACTGTAAATGGAGGAAGCAGCTCACGGATGTCCtgtcacattttttttgtttaacaCAAAGAACAAGTGTGCACGGTTTGAGACGGTCAGACTGTAAAGCAGGACCGGTAACTGAGGGATGGATGATTAAAATACACTCTGACAAATAGCTTACATTAGTGTAAGGGGTACGCTGTCTTACTCTTAACTTTACTGCGTTTCTAGTACCCCGGTGCTCCTCCTTGCCAGGAATGACGGTCTTAAATTTGTTAACTAAGCACTAACTCCAATCATTACGGTTGCAAATCTTCGTCTGTCAGTGTGTAATGAATAATAAAATGgaaccacttttttttttttttacattgtttatgATTCACTTAATAAAGTAAACGGTATTCTTGTTTTAAA
>XM_036990422.1
TTTCAGATCAGCGTATATGAAAGAGACGACCGGGGGTTTGAAGCTGTCAAATAAGTTCGCGCGAGATTTCCGAATGTGTGTTTTTAATCTTTTGGGGGTGTTCTTCTTCCTCCTTGTTTGTGAAGCTGCCCTAAATTTGTTGCGGCTGCAGTCGTATTTCTAGAAAGACCGCGGTAATAGGTAGCCGTTTTAGCGGTGACCTTTAATTCAAAGTATTTATTTATGAATTGATTCAAGAAACTTGGTAGCTAGCTAAAGACTAGGGCCACCTTCTtcgttagctagctacgttagcaATAGCGGCCAGTACCGGCAGTAGCTAGTACACACAGGTGAGTGGCCTCTCCCAGGCattagctagtagctagctagcaacatctGGGTGTATCCTACAGAAAGAAGTCCGTTTTCAGTGGAGTAACCTTTTTATTTCCTGTACGAATTGTATGTATTCATAATAAACCGACCACATCTAAATATTGCAGCGATTTCCCTTATCTGATTGTATCCATCTAAACTAGCTAGGTACGTTAGCAAGCTAACTAAATGGCGTCAGATAGTGACACAGAGGAATTCTACGATGCTGCTGAAGACGTCAATTTTACTCCATCTCCTAAAGTGACACCTGCAAAGTTTGTCCTTCCCACACCTCAGGGGGTGGTAGAGAGCCCACCAGAGGACGTGGCTGTTGGGCTGGCCGCACCTGAGGCACGCCAAGATGACTCCATTCAGATCATCGACAGCATCATTGAGGAGAGCCAGAAGGGAAGTTCAGTGGAGGAGGCTcagctgaaggaggagaggaatgttGATACAAGGGCAGAGTCAGAGGGGAAGGACGAAAATGTGGCCCCTGTAGAACGAGAGCATCCTGCTATTGAAACTCAGCCTGTGGTTGAGAGATCAGAGCAGCCACAGGAACAGCAGGAAGCGTGTTCCATGGCTCTCCCAGACATCCCCAGCCTGTTGTCAGGGTCACAGGAGCACGTCCAGCCCCCAGACATCACCAGCACCCTGGGGCAACTAGACCTCCAGCCGGACCTCCCTGACCTACCCCGGGTGTCTGCAGAGGACAGGGATAGGGAGCAGAGACCAGCAGACATCCTAGACCAGGATCCCCTCACAGACAAGCCGGCTGGCTCCTCTGACCCGGGGCCTACAAAACCCCCACGGCAGTTCACTGTAGAGCCTGACATTGTGGCCAGCACCAAGAAACCTCCACCTTCACGCCCACCCCCTCCCAGCGGAGCTGCTCCTCCACGGCCACCACCCCCATCCCGGCCTGCTTTACCCCTCAGCAAGAAGTCCCAGGAGTGTATAAGGCCAGCAGGACTGGAAGGGGAGCTGGAGGAGCCGTGTGGCCTGGTGTCTCCCAGCAGCACAGTGAGGAGCATCACCAAGGATCTGCAGCACTCTTTGGACCTGGCTAGCGCCACCAGTGGGGACAAGGTTGTCACAGCACAGGAGAATGAGGATGAGCAGGCATCCAGTCCCATTGGCGACCCTCTAGGTCCTCAGCGTCCACGATCCAACTCTGGCAGAGAGCTGACTGATGAGGAGATCCTGGCGAGTGTGATGATCAAGAATCTGGACACAGGTGAGGAGATCCCTCTCATCCAGGCGGAGGAGAAGCTTCCCACAGGGATCAACCCACTCACATTACACATCATGAGGAGGACTAAGGAGTACATCACGAATGACGCAGCACAGTCAGATGATGATGACAAGGCCCAGGCTCCATTGACCGACTCTGACGGAGGGAAGCTGAAACAGAAAACCACTCAACTGAAGAAGTTCCTGGGCAAGTCTGTGAAGAGGGCCAAGCATCTGGCTGAAGAGTATGGTGAGAAGGCCGTCAACAAGGTGAAGAGTGTCCGTGATGAAGTGTTTCACAATGACCAGGATGACCCGTCTTCCAGTGATGATGAGGGGATGCCCTACACCCGGCCTGTCAAGTTCAAGGCAGCCCACAGCTTCAAGGGCCCCTTTGACTTTGATCAGGTCAAGGTGGTCCAGGACCTGAGTGGAGAGCACATGGGTGCAGTGTGGACCATGAAGTTCTCACACTGTGGGAGGTTGTTGGCAACAGCAGGCCAGGACAACGTGGTGCGAATCTGGGTTCTGAAAAATGCCTTTGACTACTTCAACAACATGAGGATAAAGTACAACACTGAAGGCCGTGTGtcgccctctccctctcaggAAAGCCTGTGTTCCTCCAAATCAGACACGGACGGTGGGATGAGCAGTGTTCCTGAAGACCCCGATTCAGAGGACAAGAATCTCCCCTTCCGCCAAGTCCCCTTTTGCAAGTACAAGGGTCATACGGCTGACCTGCTGGACTTGTCCTGGTCAAAGAACTACTTCTTACTTTCCTCGTCAATGGATAAGACGGTCCGACTGTGGCACATATCCAGGAGAGAGTGTCTATGCTGCTTTCAGCATATTGACTTTGTCACAGCCATCGCTTTCCATCCCAGAGATGACAGGTACTTCCTGAGTGGCTCTCTGGATGGGAAGCTGCGTCTGTGGAACATCCCAGACAAGAAGGTGGCTCTGTGGAACGAGGTGGACGGACAAACACGCCTCATCACTGCTGCCAACTTCTGCCAGAATGGGAAGTACGCCGTCATCGGCACCTACGATGGCCGCTGCATCTTCTACGACACTGAGCGCCTTAAGTACCACACCCAGATCCACGTACGGTCGACCAGAGGCAGGAATCGAGTAGGACGGAAAATCACAGGCATCGAGCCTCTGCCTGGAGAGAACAAGATTCTAGTGACCTCCAATGACTCCAGGATCCGCCTGTATGACCTGCGGGACCTGTCTTTGTCCATGAAGTACAAGGGTTACGTCAACAGCAGTAGTCAGATCAAAGCCAGCTTCAGCCATGATTACTCATTCATTGTGAGTGGCTCAGAGGATAAGTACGTGTACATCTGGAGCACCTACCATGACCTGAGCAAGTTCACCTCAGTACGACGAGACCGCAATGACTTCTGGGAGGGAATTAAAGCCCACAATGCAGTAGTGACATCAGCTATTTTTGCGCCCCATCCTAACCTGATTGTCCCCCAGGAGGCGGGGGCAGAGAAAGCGGGGGCTGGGGCAGATGCAGAGTGTAAGAGCTTGGACTCTACTGACTCTGAGACCATTCCCTCAGGGGCTCTGAAGACTGATCATACAGAGGTTCTGCTCTCTGCTGACTTCACTGGTGCCATTAAGGTTTTCATCAATGTAAAAAAGTACTGAGCACTTCACCCTGAACCCTTCCTGATCTAGCCGTCAGTGTACAGTCCTTCAATGGAGGCAGAGCAACCTGCTGCCCTGCCAACGCTTCTAAAACCGGCCAATTGCCTACGGGTGAGTTCTCCTCCGGAGAACAGGGACCCTGCAGTAgaggatgaggtggaggaagTGAACTGTAAATGGAGGAAGCAGCTCACGGATGTCCtgtcacattttttttgtttaacaCAAAGAACAAGTGTGCACGGTTTGAGACGGTCAGACTGTAAAGCAGGACCGGTAACTGAGGGATGGATGATTAAAATACACTCTGACAAATAGCTTACATTAGTGTAAGGGGTACGCTGTCTTACTCTTAACTTTACTGCGTTTCTAGTACCCCGGTGCTCCTCCTTGCCAGGAATGACGGTCTTAAATTTGTTAACTAAGCACTAACTCCAATCATTACGGTTGCAAATCTTCGTCTGTCAGTGTGTAATGAATAATAAAATGgaaccacttttttttttttttacattgtttatgATTCACTTAATAAAGTAAACGGTATTCTTGTT

Function

NR:

description
WD repeat-containing protein 44-like isoform X2

GO: NA

KEGG:

id description
K20241 WDR44, RAB11BP; WD repeat-containing protein 44

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990421.1 False 3844 mRNA 0.51 20 44993286 45003089
XM_036990422.1 True 3809 mRNA 0.51 20 44993307 45003084

Neighbor

gene id symbol gene type direction distance location
LOC110534018 LOC106603117 coding upstream 225454 44765231 ~ 44767832 (+)
LOC110534014 LOC106603122 coding upstream 370610 44613844 ~ 44622676 (+)
LOC110534013 LOC106603121 coding upstream 391333 44574931 ~ 44601953 (+)
LOC110534011 LOC106603123 coding upstream 419416 44526662 ~ 44573870 (+)
LOC110534008 LOC106603125 coding upstream 489732 44494158 ~ 44503554 (+)
LOC110534027 LOC106603105 coding downstream 37672 45040761 ~ 45124746 (+)
LOC100135968 LOC100135968 coding downstream 122463 45125552 ~ 45149685 (+)
LOC110534924 NA coding downstream 151323 45154412 ~ 45155664 (+)
LOC110534029 LOC106603110 coding downstream 197595 45200684 ~ 45276970 (+)
LOC110534030 LOC106603107 coding downstream 287468 45290557 ~ 45326891 (+)
G892201 LOC106603118 non-coding upstream 325564 44667472 ~ 44667722 (+)
G892203 LOC106603118 non-coding upstream 325962 44667110 ~ 44667324 (+)
G892200 LOC106603118 non-coding upstream 326468 44666547 ~ 44666818 (+)
G892192 NA non-coding upstream 328663 44664262 ~ 44664623 (+)
G892198 NA non-coding upstream 329362 44663696 ~ 44663924 (+)
G892532 NA non-coding downstream 54761 45057850 ~ 45166003 (+)
G892607 NA non-coding downstream 190908 45193997 ~ 45280893 (+)
G892191 NA other upstream 333795 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 911876 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1052729 43938412 ~ 43940557 (+)
G891856 NA other upstream 1249796 43742917 ~ 43743490 (+)
LOC110533965 LOC106603163 other upstream 1252256 43732222 ~ 43741030 (+)
G892499 LOC106603104 other downstream 5745 45008834 ~ 45010849 (+)
LOC110534033 LOC106603099 other downstream 551148 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 619168 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 897956 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 1113196 46116285 ~ 46117943 (+)

Expression


Co-expression Network