LOC110534024 (LOC106603104)


Basic Information

Item Value
gene id LOC110534024
gene name LOC106603104
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45003241 ~ 45010947 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618657.2
ATtgtatgagagagggagggagggagggggggggttgtCAGGGCTCGTATCAGcagagttagctagctaactagagtACGGAAGCAAATGATAGCTGTCTAGATATTCATTAGCAAGGGTTCGTATCTGGCGACAAAAATGTGCAGTATCAGCATGGCAGACAAAAATGGCAAGAAAGGGAAACCTGTAGGTGTTAAGAGAACATTGACCAAGAGAGAACAAGAAGATCTGAAGAAAAAGGAACAAGAAAAAGCAGCTGACGTTTTTGAAGAGTTTTTAGCATCTTTTGACAGTAACGACAAAAGTGGGGTGAAAACGTTTGTTCGTGGGGGGATCGTGAATGCAACTAAAGAAGAGGAAGCAGCAGAGGTCAAAAAGAGCAAGCTTTACCGACCGAACACGAAGTTTACTTCAGTGTCCCAGAATGTCTCACCAGCACACTCTTCGGAAGTCAGAAGGCCGATTGTTAAAAAGAAgacagaagagaagaagaagagcaaCCTTGAACTTTTCAAAGAGGAGCTAAAGCAAATACAGGAGGAACGTGAAGAAAGGCACAAAAAAAAGAAGAATGAGCCTGGAGGAGGGTATGGAGAATTGGACATACCACTAACACGACGATCAATATTTGATGATGACCCAGCAACACCGAACACAACGAACCTGTACATTGGCTGCATTAACCCAAAGATGAATGAAGAAATGCTTTGCAAAGAGTTTGGCAAGTATGGTCCCCTGGCAAGCGTGAAGATCATGTGGCCCCGTAGTGACGAGGAACGTACCAGGGTCACAAACAGAGGCTTCGTGGCCTTTATGACCAGGAAAGATGCAGAGAGGGCCTTGGCTGCTCTAGACGGTAAAACAGTTTTGGGTTTTGAAATGAAGCTGGGATGGGGGAAAGCTGTTCGCATCCCTCCCCAGCCTCTCTATACACCCATAGGGGTACTGAAAATCTCcactcccccacccccctctggCCTGCCCTTCAATGCTCAGCCCCGAGACCGCTTCCGTAATGACTTTACCAAGCCATGGGGCAGGTCTAAGGAGGAGTTTGACAAGACTCTGTCCGAAGCCGTAGTCAAAGTGGTTATCCCAACAGAAAGGAATCTGTTGGGCCTCATCCACAGGATGATAGAGTTTGTGGTGCGTGAGGGACCCATGTTTGAAGCCATCATTATGAGCAAAGAGAAGAACAACCCTGACTTCAGGTTCCTGTTTGACAACAAAAGCCAGGAGCAGGTGTACTACCGCTGGAAACTCTACTCCATTCTCCAGGGCGAGCCCCCCAGTGAGTGGAGGACGGCAGACTTCCGGATGTTCCGTGGGGGCTCCATCTGGAGGCCGCCCCTCCTGAACCCCTACCTCCATGGAGACGAGGAggcgggagaggaggaacagTCTCCCTCTCAGGAGGAGGAGCTGAAAAAGGGCCAGCTGAAGACAGAgcacagagagagactggagacacTGCTGAGAGGGCTCACCCCTCGTAGGGAGGATGTTGGTGATGCCATGCTGTTCTGTCTGGAGAGAGCCGAGGCAGCGGAGGAGGTGGTGGGGTGCATCGCGGagtccctgtctctccttcagaCACCACTGCAGAAAAAGATTGCCAGACTGTACCTGGTATCCGACATCTTGTACAACTCCTGTGCCAAAGTTGCCAATGCATCTTATTATCGCAAGTATTTTGAAGCAAAATTGCCCCAGATATTTGGTGACATTAGTGATGCATATCGAAACATACAAGCAAGACTACAAGCGGAACAATTCAAGCAAAAGATAATGGGCTGTTTCAGGGTCTGGGAAGACTGGGCCGTCTACCCAGAGCCCTACCTGATCCAGCTGCAGAATATCTTTCTGGGTCTTGTCAAGGCAGGAGATGAAGTGATCGAGAGGGTAGAGGTGGCGTCTCCAGACCTGGATGGAGCCCCATTGGACGGGGCACCGTTAGATGGAGCTCCGCTGGACGACCTTGACGGCTCGCCCCTGGCCTGGGACCCTGCCTCCCTGGATGGGGTGCCTGTTGACGACATCGACGGAGTTCCCCTGGGCGCTCCCATGGATGACATCGACGGAATGCCTTTGGATGATCTGGCCCACTCCAAAGTGGCTCTGTCTAAATGGGAGAGGGTGGACGATGCTGAAGCTCTCCCACAAGCTAACACTGAATCCAAATGGGACAGTGTGGGAGAGCGATattctggggacaacatgaatgTAAGTACTAACACTAAGGAAGGAGATGGCGAATCAGAGGGTGACAGCAGCGATGATGACAGCCCATCTAAGTACGACAGTGCTGACTTCAAGAGCTCCCTCAGTAGTTTTGAGATGTCTGAGAGCAAGAGGAGCCGGCTGAGAGAGCTGGAGGTGAAGGTGATGCAGTTCCAGGATGAGCTGGAGACTGGGAAGAGGCCCAGGAAGTCCGGAATGAACATGCAGAAACAGGTGGAGCACTACAGGAACAAGCTGCTACAGAAGGAGTTTGATAAGGATGACCAGGAGAAGAAAGAGCGATCCACGCCGAAGTCAAAAGACAGAtcaaagaaagaggagaggagagacaagacaGAGGAGAGCAGTAAAGGACGGGAGAAGGAAAAGAGCAAAAGGAGTCAAGACCGGGATAGGAGCAGGGACAGGGGACGTAGTAGAGACACAGAGGAACGGACACAGAAATACAGAGGACATTCTCCCTCAAAAACAAAGTCAAAGTCTCCCAAGAAGTCCAAGCGGTCCCGGTCGCCCTCGCCAGCCAGGAAGACGTGGAGAAGGTCTAGCTCCCGGTCACCACACCGCTCCCACAAAAAGACAAAGAAGAGCAAACACTGATCCAGAGGCCTGGACTCCATGCCTCTCCCCTTGACACAGCAAGGCGACTCCCATGGACTGTCCTGGTCTGCCAGTGATTACCATGACACGGCCCCACCACGCTCGTTTCCTCACAATGCCTCTGAACTGTCAGCTGTTTGTTTCCCTCTGTACCGATATCCTGATTGCTGCAGTCAAGATTTGGCAAATTTTTTGTAAGATGACGTTTGAACATTATTTGTACAGTTGTTGTGCCGTTTGTTTTTAAACCCCATTCAGATTATTGCGACTAGTCCCTGAGATGTCACAATAAATCACTATTGGCATTGTG
>XM_021618658.2
TGGAAATGGGCGgagtttatgactttgtggctgtgttaattAATGACGACCGTTTTATTGGTCAGAGCGAGAAGTGACATCGCTTTTCCGCTATGTCCATTTTTGTCTATTCAAAATGGTGGAGCAATAACAAACGCATTGTACATTTCTACGTATCAGCATGGCAGACAAAAATGGCAAGAAAGGGAAACCTGTAGGTGTTAAGAGAACATTGACCAAGAGAGAACAAGAAGATCTGAAGAAAAAGGAACAAGAAAAAGCAGCTGACGTTTTTGAAGAGTTTTTAGCATCTTTTGACAGTAACGACAAAAGTGGGGTGAAAACGTTTGTTCGTGGGGGGATCGTGAATGCAACTAAAGAAGAGGAAGCAGCAGAGGTCAAAAAGAGCAAGCTTTACCGACCGAACACGAAGTTTACTTCAGTGTCCCAGAATGTCTCACCAGCACACTCTTCGGAAGTCAGAAGGCCGATTGTTAAAAAGAAgacagaagagaagaagaagagcaaCCTTGAACTTTTCAAAGAGGAGCTAAAGCAAATACAGGAGGAACGTGAAGAAAGGCACAAAAAAAAGAAGAATGAGCCTGGAGGAGGGTATGGAGAATTGGACATACCACTAACACGACGATCAATATTTGATGATGACCCAGCAACACCGAACACAACGAACCTGTACATTGGCTGCATTAACCCAAAGATGAATGAAGAAATGCTTTGCAAAGAGTTTGGCAAGTATGGTCCCCTGGCAAGCGTGAAGATCATGTGGCCCCGTAGTGACGAGGAACGTACCAGGGTCACAAACAGAGGCTTCGTGGCCTTTATGACCAGGAAAGATGCAGAGAGGGCCTTGGCTGCTCTAGACGGTAAAACAGTTTTGGGTTTTGAAATGAAGCTGGGATGGGGGAAAGCTGTTCGCATCCCTCCCCAGCCTCTCTATACACCCATAGGGGTACTGAAAATCTCcactcccccacccccctctggCCTGCCCTTCAATGCTCAGCCCCGAGACCGCTTCCGTAATGACTTTACCAAGCCATGGGGCAGGTCTAAGGAGGAGTTTGACAAGACTCTGTCCGAAGCCGTAGTCAAAGTGGTTATCCCAACAGAAAGGAATCTGTTGGGCCTCATCCACAGGATGATAGAGTTTGTGGTGCGTGAGGGACCCATGTTTGAAGCCATCATTATGAGCAAAGAGAAGAACAACCCTGACTTCAGGTTCCTGTTTGACAACAAAAGCCAGGAGCAGGTGTACTACCGCTGGAAACTCTACTCCATTCTCCAGGGCGAGCCCCCCAGTGAGTGGAGGACGGCAGACTTCCGGATGTTCCGTGGGGGCTCCATCTGGAGGCCGCCCCTCCTGAACCCCTACCTCCATGGAGACGAGGAggcgggagaggaggaacagTCTCCCTCTCAGGAGGAGGAGCTGAAAAAGGGCCAGCTGAAGACAGAgcacagagagagactggagacacTGCTGAGAGGGCTCACCCCTCGTAGGGAGGATGTTGGTGATGCCATGCTGTTCTGTCTGGAGAGAGCCGAGGCAGCGGAGGAGGTGGTGGGGTGCATCGCGGagtccctgtctctccttcagaCACCACTGCAGAAAAAGATTGCCAGACTGTACCTGGTATCCGACATCTTGTACAACTCCTGTGCCAAAGTTGCCAATGCATCTTATTATCGCAAGTATTTTGAAGCAAAATTGCCCCAGATATTTGGTGACATTAGTGATGCATATCGAAACATACAAGCAAGACTACAAGCGGAACAATTCAAGCAAAAGATAATGGGCTGTTTCAGGGTCTGGGAAGACTGGGCCGTCTACCCAGAGCCCTACCTGATCCAGCTGCAGAATATCTTTCTGGGTCTTGTCAAGGCAGGAGATGAAGTGATCGAGAGGGTAGAGGTGGCGTCTCCAGACCTGGATGGAGCCCCATTGGACGGGGCACCGTTAGATGGAGCTCCGCTGGACGACCTTGACGGCTCGCCCCTGGCCTGGGACCCTGCCTCCCTGGATGGGGTGCCTGTTGACGACATCGACGGAGTTCCCCTGGGCGCTCCCATGGATGACATCGACGGAATGCCTTTGGATGATCTGGCCCACTCCAAAGTGGCTCTGTCTAAATGGGAGAGGGTGGACGATGCTGAAGCTCTCCCACAAGCTAACACTGAATCCAAATGGGACAGTGTGGGAGAGCGATattctggggacaacatgaatgTAAGTACTAACACTAAGGAAGGAGATGGCGAATCAGAGGGTGACAGCAGCGATGATGACAGCCCATCTAAGTACGACAGTGCTGACTTCAAGAGCTCCCTCAGTAGTTTTGAGATGTCTGAGAGCAAGAGGAGCCGGCTGAGAGAGCTGGAGGTGAAGGTGATGCAGTTCCAGGATGAGCTGGAGACTGGGAAGAGGCCCAGGAAGTCCGGAATGAACATGCAGAAACAGGTGGAGCACTACAGGAACAAGCTGCTACAGAAGGAGTTTGATAAGGATGACCAGGAGAAGAAAGAGCGATCCACGCCGAAGTCAAAAGACAGAtcaaagaaagaggagaggagagacaagacaGAGGAGAGCAGTAAAGGACGGGAGAAGGAAAAGAGCAAAAGGAGTCAAGACCGGGATAGGAGCAGGGACAGGGGACGTAGTAGAGACACAGAGGAACGGACACAGAAATACAGAGGACATTCTCCCTCAAAAACAAAGTCAAAGTCTCCCAAGAAGTCCAAGCGGTCCCGGTCGCCCTCGCCAGCCAGGAAGACGTGGAGAAGGTCTAGCTCCCGGTCACCACACCGCTCCCACAAAAAGACAAAGAAGAGCAAACACTGATCCAGAGGCCTGGACTCCATGCCTCTCCCCTTGACACAGCAAGGCGACTCCCATGGACTGTCCTGGTCTGCCAGTGATTACCATGACACGGCCCCACCACGCTCGTTTCCTCACAATGCCTCTGAACTGTCAGCTGTTTGTTTCCCTCTGTACCGATATCCTGATTGCTGCAGTCAAGATTTGGCAAATTTTTTGTAAGATGACGTTTGAACATTATTTGTACAGTTGTTGTGCCGTTTGTTTTTAAACCCCATTCAGATTATTGCGACTAGTCCCTGAGATGTCACAATAAATCACTATTGGCATTGTG

Function

NR:

description
U2 snRNP-associated SURP motif-containing protein-like isoform X1

GO: NA

KEGG:

id description
K12842 SR140; U2-associated protein SR140

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618657.2 False 3148 mRNA 0.51 24 45003241 45010614
XM_021618658.2 True 3155 mRNA 0.50 24 45003241 45010947

Neighbor

gene id symbol gene type direction distance location
LOC110533119 LOC106603113 coding downstream 24985 44878607 ~ 44978256 (-)
LOC118966783 LOC106578716 coding downstream 44408 44954424 ~ 44958833 (-)
LOC110534022 LOC106603114 coding downstream 151841 44845577 ~ 44851400 (-)
LOC118936697 NA coding downstream 160118 44840712 ~ 44843123 (-)
LOC110534021 LOC106603115 coding downstream 181934 44818510 ~ 44821307 (-)
LOC110534025 LOC106603111 coding upstream 2266 45011329 ~ 45017446 (-)
LOC110534028 LOC106603112 coding upstream 154671 45165618 ~ 45181163 (-)
LOC110534031 LOC106603108 coding upstream 316364 45327311 ~ 45381903 (-)
LOC110534045 psmb6 coding upstream 604927 45615874 ~ 45629020 (-)
pold3 pold3 coding upstream 674308 45685255 ~ 45697214 (-)
G893508 NA non-coding downstream 43729 44954180 ~ 44959512 (-)
G893497 NA non-coding downstream 286687 44716298 ~ 44716554 (-)
LOC110534017 LOC106603118 non-coding downstream 345439 44655544 ~ 44751420 (-)
G893477 NA non-coding downstream 348207 44654813 ~ 44655034 (-)
G893357 NA non-coding downstream 364115 44637774 ~ 44639126 (-)
G893782 NA non-coding upstream 182182 45193129 ~ 45280890 (-)
G893822 NA non-coding upstream 251196 45262143 ~ 45263484 (-)
G893781 NA non-coding upstream 263527 45274474 ~ 45278522 (-)
G893834 NA non-coding upstream 277205 45288152 ~ 45288513 (-)
G893809 NA non-coding upstream 313019 45323966 ~ 45326807 (-)
G893541 NA other downstream 234169 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 694308 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 793977 44199178 ~ 44209264 (-)
G892965 NA other downstream 1292272 43710485 ~ 43710969 (-)
LOC110533962 LOC106603031 other downstream 1319321 43681449 ~ 43686604 (-)
LOC110534046 LOC107567170 other upstream 736368 45747090 ~ 45751405 (-)
G894917 NA other upstream 906332 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 2219857 47203241 ~ 47234608 (-)
G896841 NA other upstream 2976814 47987761 ~ 47989076 (-)

Expression


Co-expression Network