LOC100135968 (LOC100135968)


Basic Information

Item Value
gene id LOC100135968
gene name LOC100135968
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45125552 ~ 45149685 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124308.1
CAGAAGTACAGGCAGCGTACAGTACATGACCCCCGCTGAGACCTTGACTCGATTCACAGGGCCAGAAGAATGTTGAAGAGTAAAACGTGGCAGTTGACAGCCATATTAATGCTTATATCTGATTGGAGTCAGTGCATCAAGTCACAAGAATGTACAGTGGATCCTCCTGAGAACATTGGGATTGATGACCCTGGCCACCTCGGGCCGCTCTATATCCACTGGACGGCTCCAGCCAGCCTGACCAACTTGACTGCCTGCTCCATGAGATACCATCTGGAGTACTTCAACACATATCAGAGCAGATGGACTGTGATCAGGACTGTACGGACATGGTACCGTGCTCAGTTTGACCTGGAGAAGGAGGTCAGGGTGCGGATCTCCACCTTACTGAAGGGAGCCTGCACCAACGGCACTGAGCTCAAGAGCCCCTTCACAGAGATGGTTCTGCCACCCAATAACACAGGCCCAGTTGGCTCCAGGGTCCAGGGGTTTGGTTGCGTGTTTTATCAGAAGGAGTTCATGGAGTGCACCTGGGAGACGGGCTTGGAGGAGCCAACCCAATCCCAGTACAGCCTGTACTTTTGGCATCGGGAGATGGAGCAAGCGGAAGAGTGTCCTCAGTACATCCACTCCAATGGGGTCAGGACTGGCTGCAAATTCACAGAGGAATCTCTCTCAGAATTCAGTGATTTCAACATATGCATAAACAGCTCCTCTCCCGAGGTGGTCTTGAGGTCGGCGTTCTTCTCCCTGCAAATTCAGAATTATGTGAAACCTGCAGCCATTGAGACAGTGCATCTGGAAGCTAGTCCAGACAGGAGGCTCCAGGTGCAGTGGGACTTGCCCAACGAGAGGATTCCCAGGCACTGCCTTGAGTATGAAGTGGAAGCCAGAGAGGAGGGCGTAGGCGGGCAGCCATTGTTGCAGAGGAACGTAACAAATGAGATGACGCTGACTTCCCTCTCAATGGATGGTGCCCGGAGGAAGTGCTTCCGGGTCAGGTCTAGGATGCACCACTACTGTGCTGACAGAGGCTTCTGGAGTGACTGGAGCCATTGGTCCTGTCACTCAGATACAGAGTCAGATGCTGTGGTGGGCTGTGCCGTGGTCATCGGGATCATCGTCTCTATGTTGATCCTGTCTCTGTTTGGGTGGGCACTATGGAGAAAGTGGAAAGCCAGAGAGGGGGAAATGATGCCTTTCAGTCCCCTGCACAAACTGATGGAATATTCCAAAGGACTCTCTGCTCGCAGTCATTTCAATAAAACAAGAGAGAACCAGTAGTATAGCCTTTGCAAGCATTACCTTTGGGCAGACAAATGATAAAGAGATCAGAGTTAGACTGGTGTTCACACTTATTTGAAGCACCCATGCAAACATGCTCAAACACACCCATGCGCACACCCATGCACAGAAGAATAGGAAGTGTTCTTACCGAACCATTTACGTAATGTAAAACTCCCGGTTTTACGTTACACAGTATAGACTTAAGAAATGCCATAGCTCTTTCCGGTTTGTTTACTTTCCACATGTCTTTCATTTATATCACAAATTATACTTACTGGAGTCGGTTTTTGTAGTTTTAGTTTGATGCCATTGCATTCAGTCGAATGTATCTTTTAAGTGCTTTGCATAGAATTCCCTGGCCTGTTAAAATTGGATGGTGTTGAACTaatgttatgtttaatacaattTTTTGCTGCTCTATAGCTATAAAGATGCGTTGTTTGGTA
>XM_036989317.1
GCTCAGCATCACAGAGAGTGTTTGCACATTGGCAAGATGTCGCCAAGACATCTGGATTAGATCACATTTTCCCTTCAGCCGCTATTTGGACGACGCATGTCAAAGCTCCTAAATTATACTGGCAATAATAAAAAGTTACAGTCTGGATCCTCCTGAGAACATTGGGATTGATGACCCTGGCCACCTCGGGCCGCTCTATATCCACTGGACGGCTCCAGCCAGCCTGACCAACTTGACTGCCTGCTCCATGAGATACCATCTGGAGTACTTCAACACATATCAGAGCAGATGGACTGTGATCAGGACTGTACGGACATGGTACCGTGCTCAGTTTGACCTGGAGAAGGAGGTCAGGGTGCGGATCTCCACCTTACTGAAGGGAGCCTGCACCAACGGCACTGAGCTCAAGAGCCCCTTCACAGAGATGGTTCTGCCACCCAATAACACAGGCCCAGTTGGCTCCAGGGTCCAGGGGTTTGGTTGCGTGTTTTATCAGAAGGAGTTCATGGAGTGCACCTGGGAGACGGGCTTGGAGGAGCCAACCCAATCCCAGTACAGCCTGTACTTTTGGCATCGGGAGATGGAGCAAGCGGAAGAGTGTCCTCAGTACATCCACTCCAATGGGGTCAGGACTGGCTGCAAATTCACAGAGGAATCTCTCTCAGAATTCAGTGATTTCAACATATGCATAAACAGCTCCTCTCCCGAGGTGGTCTTGAGGTCGGCGTTCTTCTCCCTGCAAATTCAGAATTATGTGAAACCTGCAGCCATTGAGACAGTGCATCTGGAAGCTAGTCCAGACAGGAGGCTCCAGGTGCAGTGGGACTTGCCCAACGAGAGGATTCCCAGGCACTGCCTTGAGTATGAAGTGGAAGCCAGAGAGGAGGGCGTAGGCGGGCAGCCATTGTTGCAGAGGAACGTAACAAATGAGATGACGCTGACTTCCCTCTCAATGGATGGTGCCCGGAGGAAGTGCTTCCGGGTCAGGTCTAGGATGCACCACTACTGTGCTGACAGAGGCTTCTGGAGTGACTGGAGCCATTGGTCCTGTCACTCAGATACAGAGTCAGATGCTGTGGTGGGCTGTGCCGTGGTCATCGGGATCATCGTCTCTATGTTGATCCTGTCTCTGTTTGGGTGGGCACTATGGAGAAAGTGGAAAGCCAGAGAGGGGGAAATGATGCCTTTCAGTCCCCTGCACAAACTGATGGAATATTCCAAAGGACTCTCTGCTCGCAGTCATTTCAATAAAACAAGAGAGAACCAGTAGTATAGCCTTTGCAAGCATTACCTTTGGGCAGACAAATGATAAAGAGATCAGAGTTAGACTGGTGTTCACACTTATTTGAAGCACCCATGCAAACATGCTCAAACACACCCATGCGCACACCCATGCACAGAAGAATAGGAAGTGTTCTTACCGAACCATTTACGTAATGTAAAACTCCCGGTTTTACGTTACACAGTATAGACTTAAGAAATGCCATAGCTCTTTCCGGTTTGTTTACTTTCCACATGTCTTTCATTTATATCACAAATTATACTTACTGGAGTCGGTTTTTGTAGTTTTAGTTTGATGCCATTGCATTCAGTCGAATGTATCTTTTAAGTGCTTTGCATAGAATTCCCTGGCCTGTTAAAATTGGATGGTGTTGAACTaatgttatgtttaatacaattTTTTGCTGCTCTATAGCTATAAAGATGCGTTGTTTGGTA

Function

NR:

description
interleukin 13 receptor alpha-2 precursor

GO: NA

KEGG:

id description
K05077 IL13RA2, CD213A2; interleukin 13 receptor alpha-2

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124308.1 False 1733 mRNA 0.48 10 45125552 45149685
XM_036989317.1 True 1719 mRNA 0.48 9 45137385 45149685

Neighbor

gene id symbol gene type direction distance location
LOC110534027 LOC106603105 coding upstream 2477 45040761 ~ 45124746 (+)
LOC110534023 LOC106603103 coding upstream 122463 44993286 ~ 45003089 (+)
LOC110534018 LOC106603117 coding upstream 357720 44765231 ~ 44767832 (+)
LOC110534014 LOC106603122 coding upstream 502876 44613844 ~ 44622676 (+)
LOC110534013 LOC106603121 coding upstream 523599 44574931 ~ 44601953 (+)
LOC110534924 NA coding downstream 4727 45154412 ~ 45155664 (+)
LOC110534029 LOC106603110 coding downstream 50999 45200684 ~ 45276970 (+)
LOC110534030 LOC106603107 coding downstream 140872 45290557 ~ 45326891 (+)
LOC118937071 NA coding downstream 212548 45362233 ~ 45362286 (+)
LOC118936925 LOC106603184 coding downstream 288506 45438191 ~ 45443347 (+)
G892201 LOC106603118 non-coding upstream 457830 44667472 ~ 44667722 (+)
G892203 LOC106603118 non-coding upstream 458228 44667110 ~ 44667324 (+)
G892200 LOC106603118 non-coding upstream 458734 44666547 ~ 44666818 (+)
G892192 NA non-coding upstream 460929 44664262 ~ 44664623 (+)
G892607 NA non-coding downstream 44312 45193997 ~ 45280893 (+)
G893876 NA non-coding downstream 234832 45384517 ~ 45384723 (+)
G893880 NA non-coding downstream 237437 45387122 ~ 45387370 (+)
G892499 LOC106603104 other upstream 114703 45008834 ~ 45010849 (+)
G892191 NA other upstream 466061 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1044142 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1184995 43938412 ~ 43940557 (+)
G891856 NA other upstream 1382062 43742917 ~ 43743490 (+)
LOC110534033 LOC106603099 other downstream 404552 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 472572 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 751360 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 966600 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 1477607 46627292 ~ 46700540 (+)

Expression


Co-expression Network