LOC110534028 (LOC106603112)


Basic Information

Item Value
gene id LOC110534028
gene name LOC106603112
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45165618 ~ 45181163 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618661.2
gaggaggagagaggacttcAATCAGGGTTTTCATCCCAACTCGCTACAGTCGATTCTGAACTTTCGGATTGAGGGTGCTGGAGGACGCTGTCACAGCTTTTCTCCTCTGCTCTATTTCAACACGCGTGGATCGAAGTAAACTTAATATGAAAACATGTCTGTAAATGAAGTGTACGTTTTCAGACCATTCAAGTTGATTGCTTTACTTTGTGTCTTTCTGGCATTGTGTCTGGACATTGTAGCGTTATTGAGTCCCGCCTGGGTAACCGCAGAGCGGTTTTCTTTGTCGCTATGGGAATCATGCACCGAAAAAGATTCTGGCTGGAGATGCCTTTCCACCCTCAAATCTGACTGGCAGATAGCCACCCTTGTGTTGCTGCTGGCTGGTGCTGCGGTGACTCTGGTGGCCTTCCTGGTGGCCCTCGTCTCCCTGTGCCGGGGGACACACAGACAGCACTACCGCACAGTAGCCGTGTTCATGTTCGCTGCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGGACCGTCCTGCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGAGCTACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTATGAGGATGCTATGTACTGagccctcatctctctccttctcctactctctctatctctctcttgctctttctgtcacacacgcacacacacacacacacgcacgcacgcacgcacgcacgcacaaataAATATTCACACCCATACTctggtacaacacacacacacacacacacacacacacacacacacacacacacacacaaataaatattCACACCCATACTCTGG
>XM_036990427.1
AGAcgcgaggaggagagaggacttcAATCAGGGTTTTCATCCCAACTCGCTACAGTCGATTCTGAACTTTCGGATTGAGGGTGCTGGAGGACGCTGTCACAGCTTTTCTCCTCTGCTCTATTTCAACACGCGTGGATCGAAGTAAACTTAATATGAAAACATGTCTGTAAATGAAGTGTACGTTTTCAGACCATTCAAGTTGATTGCTTTACTTTGTGTCTTTCTGGCATTGTGTCTGGACATTGTAGCGTTATTGAGTCCCGCCTGGGTAACCGCAGAGCGGTTTTCTTTGTCGCTATGGGAATCATGCACCGAAAAAGATTCTGGCTGGAGATGCCTTTCCACCCTCAAATCTGACTGGCAGATAGCCACCCTTGTGTTGCTGCTGGCTGGTGCTGCGGTGACTCTGGTGGCCTTCCTGGTGGCCCTCGTCTCCCTGTGCCGGGGGACACACAGACAGCACTACCGCACAGTAGCCGTGTTCATGTTCGCTGCAGatttttttcccttTCTTTCAGTGGTCCTTCAGGCCTGTGCACTGGTCCTCTACCCAATCAAGTTCATTGATGGGACCGTCCTGCAGACCTACCATGAGTTCAACTGGGGCTACGGACTGGGCTGGGGAGCTACCATCTTCATGCTAGGGGGAGGCATCCTCTTCTGCCTCCGGACGGACATGTATGAGGATGCTATGTACTGagccctcatctctctccttctcctactctctctatctctctcttgctctttctgtcacacacgcacacacacacacacacgcacgcacgcacgcacgcacgcacaaataAATATTCACACCCATACTctggtacaacacacacacacacacacacacacacacacacacacacacacacacacaaataaatattCACACCCATACTCTGG

Function

NR:

description
PREDICTED: transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618661.2 False 882 mRNA 0.51 3 45165618 45181157
XM_036990427.1 True 909 mRNA 0.51 3 45165618 45181163

Neighbor

gene id symbol gene type direction distance location
LOC110534025 LOC106603111 coding downstream 148172 45011329 ~ 45017446 (-)
LOC110534024 LOC106603104 coding downstream 154671 45003241 ~ 45010947 (-)
LOC110533119 LOC106603113 coding downstream 187362 44878607 ~ 44978256 (-)
LOC118966783 LOC106578716 coding downstream 206785 44954424 ~ 44958833 (-)
LOC110534022 LOC106603114 coding downstream 314218 44845577 ~ 44851400 (-)
LOC110534031 LOC106603108 coding upstream 146148 45327311 ~ 45381903 (-)
LOC110534045 psmb6 coding upstream 434711 45615874 ~ 45629020 (-)
pold3 pold3 coding upstream 504092 45685255 ~ 45697214 (-)
LOC110534047 NA coding upstream 519126 45700289 ~ 45702447 (-)
wdr73 LOC106603095 coding upstream 526994 45708157 ~ 45710654 (-)
G893508 NA non-coding downstream 206106 44954180 ~ 44959512 (-)
G893497 NA non-coding downstream 449064 44716298 ~ 44716554 (-)
LOC110534017 LOC106603118 non-coding downstream 507816 44655544 ~ 44751420 (-)
G893477 NA non-coding downstream 510584 44654813 ~ 44655034 (-)
G893357 NA non-coding downstream 526492 44637774 ~ 44639126 (-)
G893782 NA non-coding upstream 11966 45193129 ~ 45280890 (-)
G893822 NA non-coding upstream 80980 45262143 ~ 45263484 (-)
G893781 NA non-coding upstream 93311 45274474 ~ 45278522 (-)
G893834 NA non-coding upstream 106989 45288152 ~ 45288513 (-)
G893809 NA non-coding upstream 142803 45323966 ~ 45326807 (-)
G893541 NA other downstream 396546 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 856685 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 956354 44199178 ~ 44209264 (-)
G892965 NA other downstream 1454649 43710485 ~ 43710969 (-)
LOC110534046 LOC107567170 other upstream 566152 45747090 ~ 45751405 (-)
G894917 NA other upstream 736116 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 2049641 47203241 ~ 47234608 (-)
G896841 NA other upstream 2806598 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3700564 48881449 ~ 48907973 (-)

Expression


Co-expression Network