LOC110534029 (LOC106603110)


Basic Information

Item Value
gene id LOC110534029
gene name LOC106603110
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45200684 ~ 45276970 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990428.1
AGGACCCAGCAGTGCAGCCGGTCAGGTATGCACAGCTCATGGACTAGAGCGAGGCAGACAAAGGCAAAAAGAGCTCGTGCCGCTTTCCTGCAGCATCCACACCCACCCACTTCGCTCCATACACTCCAGCGCGGACTCCCCAGAGCTCTCCACCTTCAGCACCCGTCTACCACGGACCCTCCCGGACCTCTGTTGCCATGGAGCTGGACTTTGGCCATTTCGACGAGCGAGACAAGCCCCGTAACCCGCGGGGCGGGCGCATGAACGGGCTGCCCAGCCCCACCCACAGCGCCCACTGCAGCTTCTACCGCACGCGCACCCTGCAGGCTCTCACCAACGAGAAGAAGGCCAAGAAGGTGCGGTTCTACCGCAACGGAGACCGCTACTTCAAGGGCATTGTGTACGCCGTGGCCGTGGAACGCTTCCGCACCTTCGACGCCCTCTTGGCCGACCTGACGCGCTCCCTCTCCGATCACATCAACCTTCCCCAGGGGGTCCGCTTCATCTTCTCCATCGACGGAACGCGCAAGATCACCACCATGGACGAGCTGGAGGAAGgAGAGAGCTACGTCTGTGCGTCCGAGAACATCTACAAGAAGGTCGACTACACGAAGAACGTCAACCCCAACTGGTCTGTGAACGTGAAGGCCTCGGCCAGCCAGAAGAACCTGCAGAGCCTAGCCAGTAAGCAGGCCGGCGAAGCCCGGGAGGGCAAGGAGTTTGTTCGGCCCAAGCTGGTGACGGTGATGCGGAGTGGCGTGAAGCCGAGGAAGGCCGTCCGCGTGCTGCTCAACAAGAAGACCGCGCACTCCTTCGAACAGGTGCTCACCGACATCACAGAGGCCATCAAGCTGGAGAGCGGCGTGGTCAAGAGGATCTACACACTGGACGGAAAGCAGGTCACCTGTCTTCAGGATTTCTTTGGTGATGATGATGTCTTCATTGCCTGTGGCCCAGAGAAGTTCCGCTACGCCCAGGATGACTTCTCCCTGGATGAGAATGCACACTACCCCTCTGGAACCAAACCCAAATCAGCCCAGGGGGCCTTTAATAACCAAGAAGGTTGCAGGATGATGAAGAAGAAAAGTCCAGGTCAGATCCGGCGCAGCAAGTCTCCTGCTGAATCGACCAATGGGACGGCCTCCAGCAGCCAGCTCTCCACCCCAATTTCCAAGCAGtcccccacctccacccccaacagcccaggCATCCACCGCAAGCAGAAGGATCTCTACCTGCCCCTATCTCTGGATGATGATGATTCTCTTGGGGAATCCATGTAGAGCCTCCTGTCTGTCAGCTGCTGCCTGCCTACCCGTCTCCCACTGGCCTGCCACTCGGAGGTATCTCTGGTGCTCTCCACCTTCACTGACGGCCAGCGTCCTCTAGTGTACTATCCGGGAGGACTTCTCCATTTGATCTCTCCCTGGTGCCACGTGCTATGTCTACCTGGCCTTGGCCACCACGGCTGTTCCACCTTTTGCTGCTTGAGAATTCACCACTAGATCTTGTTTTTTATATCCTATGTTGTTAAGAATGTATATGCTGGGCGTATACGACAATGATGTACGAATTACTGCATCTTAACAAATTCGCCAAATCCTtctattgtgtgaaagtccagggTTTACTCTTATGCTCTCAGAAGGGGCACATCATTTACTAACAAGCAATTTCAAAGATGCAGTTCCCACAATGTAACTACAAAAGTGTCTTTTTTTCCCAGTTGAAAACCATGCATTCTGATATAGGGCAAATCACACATTTCTACGATTTTCCCAATTCAAGTGCACAATTCCAAGCAGCAAATGGACTATTTCTCTGGGGTGTAGTAGTCAGTAGTCACGTTTTGCTCATAATGtccctctttgtcctctctctttctgtgctaTGGTTCAAGCTGTTAAAAGTAATGAGAACATTTTTAGGGGAAGGCGCTTTAGCCGTGAGAGGTGAATGTCCTCCTTTTCATCTACTGTAAATACTGTGTATAGCCATTGCAACATCCCAGCTAATGCCTAACATTCATAACTATGCTTTCACAAAACGTCAATACATCGCCTGCCAAACGTTGAGTCAACATAACATGTTTTCTGTGCATCGTCTATCTATGAGGTCTTCAAAAACTGCAAGGCACAGTGGAGCCAAGCGGCTTTGAAACCGTGGGCATGTAGAGTAGGGTTACTGGGGTAAGTTATACTAGTGTGTACAAACCAACCAAAGCCAGAAAAAAAAAATTGCccttttaaaaaacaaacaagcacgtccatttttttaaattaaataacgGTTTAGGATTCTTAAATGTATTTTGGTGATGATTATTTGAACTCCTTTTTGTGACTGATTATACAATGGAGATGTGATACAGCCAGGTGTACTTATATTGAGGCAAGTTTAGAATAAATGATCCTGACAATAAAACAAGAGGTCAAAGCCAAAGTATATATTGTATCAAGCAAAGTAGAAATCTAAAATGTAGATCATCTGTAGTTCCCCCAGTGGAGACATACCTGTCTGCTATTGTACTCTGTACTGTCTGTTTGTTACTGGGGCCTCCCATGAGACCATTCTAACCAGACCATGTCCATGTAGGGTAAATAGATTTTCACCAGCACAGAAAACAATAGAGTAGAGCTTCTCACATTTTGCATGGCTAAATCTTTTTTTCTTAGTGCTTATTGGTTGAATACAAAAGTTTAGATAGGAGGAAATTGAATTGTTTGTtcgaagaaaaaaaaagtattattaaaaaaaaaaatgaagtaaTATATATGTCTAAAACATTGTTCCTTTTCTTGACGAGTCACACATGAATGGTTATAGTAACGTCATGTTCCTAGAGAGGATGTCTGGCGAAATCTGATTAACACATCATTGTGTTATAGTGCAGGCATATGGACATTTTTCTGTGACGGTCGTCCCAAAGAATAGTGTGAAATACTAGACCAAGTATTACGTATGTAAGGTATTTACGTCTGTAAAGTGATCCAGTGTGAACCTCTCTCTGGACCTGACCCAAATCTGACCCAAATGAGCAGCACAACACACTCTCGACTACTTACACCCGCCATCTGCagggagtgatgtcactgtgatGTCAGCACTACAGCTGCATGTCCACTTTTACATCTTCTGGGAATCAACACTTTGTCAAATAAAAGTCTCTTCTGGAGAATTCAGTTCTACTTTATCTCACCAGCTGTTCAATATCTTGTCTCTTTGCCCCAGATTTTCTACAGTTTAACATGAACAGTGTCAGTCGGTTGTTTtgtgtgatgctgccaccaccctaTAATACAGGAGCTGTGGGCCAAACTCTCACCTCCAGTGGTGCCTCTTTTTTTTTGATTGCCGTCttttgataaataaaaaaaaatgataaaaaaaaacaaaacaaacaggaaaacTAAGACATGGCCTCTTTGTTAACAAACTGTTTGTAGAGCATTTTTAAATGTCTTGAATTGTGGAGCTGCCATCAGCGCAGTGTGATCTCTCATACATTGTTTTTGATAGAATGCCAGGGTAACTATATCATAGTGCAGACAtactctctttctgttctctctgaaTGAATCTCTTGATGGAATGAATTGGGTTACTGGGAAATGTACAACGTCCTCTTTAATGGTGTTTTTTGCAATGTCACAGTGGCTTGTTTCAGTGCTTCACTCTATGTATTAACCAATTCCCTTTTGCAATTAAAAGCGTTGTGTTCCACC
>XM_036990429.1
AGGACCCAGCAGTGCAGCCGGTCAGGTATGCACAGCTCATGGACTAGAGCGAGGCAGACAAAGGCAAAAAGAGCTCGTGCCGCTTTCCTGCAGCATCCACACCCACCCACTTCGCTCCATACACTCCAGCGCGGACTCCCCAGAGCTCTCCACCTTCAGCACCCGTCTACCACGGACCCTCCCGGACCTCTGTTGCCATGGAGCTGGACTTTGGCCATTTCGACGAGCGAGACAAGCCCCGTAACCCGCGGGGCGGGCGCATGAACGGGCTGCCCAGCCCCACCCACAGCGCCCACTGCAGCTTCTACCGCACGCGCACCCTGCAGGCTCTCACCAACGAGAAGAAGGCCAAGAAGGTGCGGTTCTACCGCAACGGAGACCGCTACTTCAAGGGCATTGTGTACGCCGTGGCCGTGGAACGCTTCCGCACCTTCGACGCCCTCTTGGCCGACCTGACGCGCTCCCTCTCCGATCACATCAACCTTCCCCAGGGGGTCCGCTTCATCTTCTCCATCGACGGAACGCGCAAGATCACCACCATGGACGAGCTGGAGGAAGgAGAGAGCTACGTCTGTGCGTCCGAGAACATCTACAAGAAGGTCGACTACACGAAGAACGTCAACCCCAACTGGTCTGTGAACGTGAAGGCCTCGGCCAGCCAGAAGAACCTGCAGAGCCTAGCCAGTAAGCAGGCCGGCGAAGCCCGGGAGGGCAAGGAGTTTGTTCGGCCCAAGCTGGTGACGGTGATGCGGAGTGGCGTGAAGCCGAGGAAGGCCGTCCGCGTGCTGCTCAACAAGAAGACCGCGCACTCCTTCGAACAGGTGCTCACCGACATCACAGAGGCCATCAAGCTGGAGAGCGGCGTGGTCAAGAGGATCTACACACTGGACGGAAAGCAGGTCACCTGTCTTCAGGATTTCTTTGGTGATGATGATGTCTTCATTGCCTGTGGCCCAGAGAAGTTCCGCTACGCCCAGGATGACTTCTCCCTGGATGAGAATGAAGGTTGCAGGATGATGAAGAAGAAAAGTCCAGGTCAGATCCGGCGCAGCAAGTCTCCTGCTGAATCGACCAATGGGACGGCCTCCAGCAGCCAGCTCTCCACCCCAATTTCCAAGCAGtcccccacctccacccccaacagcccaggCATCCACCGCAAGCAGAAGGATCTCTACCTGCCCCTATCTCTGGATGATGATGATTCTCTTGGGGAATCCATGTAGAGCCTCCTGTCTGTCAGCTGCTGCCTGCCTACCCGTCTCCCACTGGCCTGCCACTCGGAGGTATCTCTGGTGCTCTCCACCTTCACTGACGGCCAGCGTCCTCTAGTGTACTATCCGGGAGGACTTCTCCATTTGATCTCTCCCTGGTGCCACGTGCTATGTCTACCTGGCCTTGGCCACCACGGCTGTTCCACCTTTTGCTGCTTGAGAATTCACCACTAGATCTTGTTTTTTATATCCTATGTTGTTAAGAATGTATATGCTGGGCGTATACGACAATGATGTACGAATTACTGCATCTTAACAAATTCGCCAAATCCTtctattgtgtgaaagtccagggTTTACTCTTATGCTCTCAGAAGGGGCACATCATTTACTAACAAGCAATTTCAAAGATGCAGTTCCCACAATGTAACTACAAAAGTGTCTTTTTTTCCCAGTTGAAAACCATGCATTCTGATATAGGGCAAATCACACATTTCTACGATTTTCCCAATTCAAGTGCACAATTCCAAGCAGCAAATGGACTATTTCTCTGGGGTGTAGTAGTCAGTAGTCACGTTTTGCTCATAATGtccctctttgtcctctctctttctgtgctaTGGTTCAAGCTGTTAAAAGTAATGAGAACATTTTTAGGGGAAGGCGCTTTAGCCGTGAGAGGTGAATGTCCTCCTTTTCATCTACTGTAAATACTGTGTATAGCCATTGCAACATCCCAGCTAATGCCTAACATTCATAACTATGCTTTCACAAAACGTCAATACATCGCCTGCCAAACGTTGAGTCAACATAACATGTTTTCTGTGCATCGTCTATCTATGAGGTCTTCAAAAACTGCAAGGCACAGTGGAGCCAAGCGGCTTTGAAACCGTGGGCATGTAGAGTAGGGTTACTGGGGTAAGTTATACTAGTGTGTACAAACCAACCAAAGCCAGAAAAAAAAAATTGCccttttaaaaaacaaacaagcacgtccatttttttaaattaaataacgGTTTAGGATTCTTAAATGTATTTTGGTGATGATTATTTGAACTCCTTTTTGTGACTGATTATACAATGGAGATGTGATACAGCCAGGTGTACTTATATTGAGGCAAGTTTAGAATAAATGATCCTGACAATAAAACAAGAGGTCAAAGCCAAAGTATATATTGTATCAAGCAAAGTAGAAATCTAAAATGTAGATCATCTGTAGTTCCCCCAGTGGAGACATACCTGTCTGCTATTGTACTCTGTACTGTCTGTTTGTTACTGGGGCCTCCCATGAGACCATTCTAACCAGACCATGTCCATGTAGGGTAAATAGATTTTCACCAGCACAGAAAACAATAGAGTAGAGCTTCTCACATTTTGCATGGCTAAATCTTTTTTTCTTAGTGCTTATTGGTTGAATACAAAAGTTTAGATAGGAGGAAATTGAATTGTTTGTtcgaagaaaaaaaaagtattattaaaaaaaaaaatgaagtaaTATATATGTCTAAAACATTGTTCCTTTTCTTGACGAGTCACACATGAATGGTTATAGTAACGTCATGTTCCTAGAGAGGATGTCTGGCGAAATCTGATTAACACATCATTGTGTTATAGTGCAGGCATATGGACATTTTTCTGTGACGGTCGTCCCAAAGAATAGTGTGAAATACTAGACCAAGTATTACGTATGTAAGGTATTTACGTCTGTAAAGTGATCCAGTGTGAACCTCTCTCTGGACCTGACCCAAATCTGACCCAAATGAGCAGCACAACACACTCTCGACTACTTACACCCGCCATCTGCagggagtgatgtcactgtgatGTCAGCACTACAGCTGCATGTCCACTTTTACATCTTCTGGGAATCAACACTTTGTCAAATAAAAGTCTCTTCTGGAGAATTCAGTTCTACTTTATCTCACCAGCTGTTCAATATCTTGTCTCTTTGCCCCAGATTTTCTACAGTTTAACATGAACAGTGTCAGTCGGTTGTTTtgtgtgatgctgccaccaccctaTAATACAGGAGCTGTGGGCCAAACTCTCACCTCCAGTGGTGCCTCTTTTTTTTTGATTGCCGTCttttgataaataaaaaaaaatgataaaaaaaaacaaaacaaacaggaaaacTAAGACATGGCCTCTTTGTTAACAAACTGTTTGTAGAGCATTTTTAAATGTCTTGAATTGTGGAGCTGCCATCAGCGCAGTGTGATCTCTCATACATTGTTTTTGATAGAATGCCAGGGTAACTATATCATAGTGCAGACAtactctctttctgttctctctgaaTGAATCTCTTGATGGAATGAATTGGGTTACTGGGAAATGTACAACGTCCTCTTTAATGGTGTTTTTTGCAATGTCACAGTGGCTTGTTTCAGTGCTTCACTCTATGTATTAACCAATTCCCTTTTGCAATTAAAAGCGTTGTGTTCCACC

Function

NR:

description
PREDICTED: neuronal migration protein doublecortin-like isoform X2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process

KEGG:

id description
K16579 DCX; neuronal migration protein doublecortin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990428.1 False 3725 mRNA 0.47 8 45200684 45276970
XM_036990429.1 True 3668 mRNA 0.46 7 45200684 45276970

Neighbor

gene id symbol gene type direction distance location
LOC110534924 NA coding upstream 45020 45154412 ~ 45155664 (+)
LOC100135968 LOC100135968 coding upstream 50999 45125552 ~ 45149685 (+)
LOC110534027 LOC106603105 coding upstream 77609 45040761 ~ 45124746 (+)
LOC110534023 LOC106603103 coding upstream 197595 44993286 ~ 45003089 (+)
LOC110534018 LOC106603117 coding upstream 432852 44765231 ~ 44767832 (+)
LOC110534030 LOC106603107 coding downstream 13587 45290557 ~ 45326891 (+)
LOC118937071 NA coding downstream 85263 45362233 ~ 45362286 (+)
LOC118936925 LOC106603184 coding downstream 161221 45438191 ~ 45443347 (+)
LOC110534037 LOC106603102 coding downstream 168108 45445078 ~ 45450123 (+)
LOC110534036 LOC106563427 coding downstream 182690 45459660 ~ 45549430 (+)
G892532 NA non-coding upstream 34681 45057850 ~ 45166003 (+)
G892201 LOC106603118 non-coding upstream 532962 44667472 ~ 44667722 (+)
G892203 LOC106603118 non-coding upstream 533360 44667110 ~ 44667324 (+)
G893876 NA non-coding downstream 107547 45384517 ~ 45384723 (+)
G893880 NA non-coding downstream 110152 45387122 ~ 45387370 (+)
G893881 NA non-coding downstream 110471 45387441 ~ 45387735 (+)
G893991 NA non-coding downstream 322812 45599782 ~ 45599984 (+)
G892499 LOC106603104 other upstream 189835 45008834 ~ 45010849 (+)
G892191 NA other upstream 541193 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1119274 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1260127 43938412 ~ 43940557 (+)
G891856 NA other upstream 1457194 43742917 ~ 43743490 (+)
LOC110534033 LOC106603099 other downstream 277267 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 other downstream 345287 45622164 ~ 45654911 (+)
LOC110534056 LOC106603182 other downstream 624075 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 839315 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 1350322 46627292 ~ 46700540 (+)

Expression


Co-expression Network