LOC110534031 (LOC106603108)


Basic Information

Item Value
gene id LOC110534031
gene name LOC106603108
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45327311 ~ 45381903 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990430.1
aaacaggatgcacctgagctcaatttcgagtctcatggcaatggCAaacaagaagaaggagaaggagcgtCCTGAGATCTCCCTGCCCTCAGACTTTGAGCACACCATCCATGTTGGTTTTGACGCTGTTACAGGGGAGTTCACTGGCATCCCAGAGCAGTGGGCACGCCTCCTTCAGACCTCCAACATCACCAAGCTGGAGCAGAAGAAGAACCCTCAGGCCGTGCTGGACGTGCTCAAGTTCTACGACTCCAAAGAGACGGTCAACAACCAGAAATACATGAGTTTCACCTCCGGAGACAAATCCGCACATGGATACATAGCAGTCAACACTCTGAACCGACTGCTGTCGTCTGGGCCTCCTGTCAGCCATAGAACCTGCAGCGCATTATTTGACAAGGGTGCAAAGACATCCACAGAGCCCCCGATAGCGCCCCCTgtgtcagaggaggaggaggaggaggaggaagaagaggaggaggatgacgaTGATGACAATGAGCTTCCGCCCGTCATCGCACCTCGACCTGAGCACACTAAATCTATATACACCCGCTCTGTCATCGAGCCCTTGGCGCCTCCCGCCCCTGTGAAGGAGGTCACAACCCCGCCGGAGTCCCAGGTCTTACCAGAGAACACATCCAGCACTCTGTACCGCAACACAGACCGGCAGAAGAAGAAGTCCAAGATGACAGACGAGGAGATTCTGGAGCGACTGAgGAGCATTGTGAGTGTGGGGGACCCCAAAAAGAAGTACACACGCTTTGAGAAAATAGGACAAGGGGCATCTGGCACTGTATACACAGCCATTGACATTGCTACTGGCCAGGAGGTGGCCATCAAGCAGATGAACCTCCAGCAGCAGCCCAAGAAGGAGCTCATCATCAATGAGATCCTGGTGATGAGGGAAAACAAAAACCCCAACATAGTCAACTACCTGGACAGTTACCTGGTAGGGGATGAGCTGTGGGTAGTGATGGAGTACCTGGCTGGAGGCTCACTGACTGATGTCGTGACTGAGACCTGCATGGACGAGGGCCAGATCGCTGCAGTCTGCAGAGAGTGTCTGCAGGCTCTGGACTTTCTGCACTCCAACCAGGTGATCCACAGAGACATCAAGAGTGACAACATCCTGCTGGGCATGGACGGCTCGGTCAAGCTCACCGACTTCGGGTTCTGTGCCCAGATCACCCCAGAGCAGAACAAGCGCAGCACCATGGTGGGCACGCCCTACTGGATGGCACCCGAGGTGGTGACCCGCAAGGCCTACGGGCCCAAGGTTGACATCTGGTCCCTGGGTATCATGGCCATAGAGATGGTGGAGGGTGAACCTCCCTACCTGAATGAGAACCCTCTCAGAGCGCTGTACCTTATCGCCACCAACGGGACTCCAGAGCTCCAGAACCCTGAGCGATTGACCTCCGTGTTCAGAGACTTCCTCAACCGTTGCCTGGAGATGGACGTGGACCGCAGAGGCTCAGCCAAGGAGCTCCTCCAGCATTCGTTCCTGAAGTTAGCCAAGCCCCTGTCCAGCCTGAGCCCCCTGATTGTTGCAGCCAAGGAAGCCATCAAGAACAGCAGCCGCTAGGAGGCGCTGTGTGTCCACACACAGAGCTGGACCCTGCTCCATGGGGTTGTGAGACAGGCAGCACAGGGATAAACAGTAACCAACCCCCCCTGCTGCCTCATACAGAGGATGGACAGCTGGCCTACAGGGCCTCTCAGCGGCCGAGATGCTGCTACTGAATCACCTTCCTGCCTCCTCTTTTAGTCCGCCAGCATTCTGTACATGTGGAGCAGTCCATCGGtactgtgtaagtgtgtgtgtgtgtgtacgtgtgtgtatgtgcgtaagcttgtgtgtgtgtaagggtgtgtgtgtgtaagtgtgtgtgtcctgtgagGGGAGTAGATGCTCCttaacaa
>XM_021618666.2
TGGACTGAGCAAGGCGGATGACATCATGAGCTAGGGAACAGTGAGCAGCCAGTGAAGCGTCCAGCCTGCCGAACAAGGCTGAGTTTAGGGTCAGGAACCGGTCTGACAAGAGAATGGCAATCCTGCCTGTAAACTGTCAATAGGACTTAACAGTTAAGGATGAACCTACCAGAACACTGGATCCAAAGGCGACACACCGAACAAGAGAATGTCAAGACATATTTCAGGATACTGTGAGTGTTACTAAAGATGTCCGATAGTGTCGATATTGAAGAGAAACCGCCAGCCCCTCCCTTGAGAATGAACAGTAGTTCCCGAGACTCTTCATCAGTGAATCACGGCTCCAAACCTCTCCCAATGGCTCCTGAAGAGAAGAACAAGAAGGTTCGCCTGCGCTCCATCTTCCCTGGAGGAGACAAGACAaacaagaagaaggagaaggagcgtCCTGAGATCTCCCTGCCCTCAGACTTTGAGCACACCATCCATGTTGGTTTTGACGCTGTTACAGGGGAGTTCACTGGCATCCCAGAGCAGTGGGCACGCCTCCTTCAGACCTCCAACATCACCAAGCTGGAGCAGAAGAAGAACCCTCAGGCCGTGCTGGACGTGCTCAAGTTCTACGACTCCAAAGAGACGGTCAACAACCAGAAATACATGAGTTTCACCTCCGGAGACAAATCCGCACATGGATACATAGCAGTCAACACTCTGAACCGACTGCTGTCGTCTGGGCCTCCTGTCAGCCATAGAACCTGCAGCGCATTATTTGACAAGGGTGCAAAGACATCCACAGAGCCCCCGATAGCGCCCCCTgtgtcagaggaggaggaggaggaggaggaagaagaggaggaggatgacgaTGATGACAATGAGCTTCCGCCCGTCATCGCACCTCGACCTGAGCACACTAAATCTATATACACCCGCTCTGTCATCGAGCCCTTGGCGCCTCCCGCCCCTGTGAAGGAGGTCACAACCCCGCCGGAGTCCCAGGTCTTACCAGAGAACACATCCAGCACTCTGTACCGCAACACAGACCGGCAGAAGAAGAAGTCCAAGATGACAGACGAGGAGATTCTGGAGCGACTGAgGAGCATTGTGAGTGTGGGGGACCCCAAAAAGAAGTACACACGCTTTGAGAAAATAGGACAAGGGGCATCTGGCACTGTATACACAGCCATTGACATTGCTACTGGCCAGGAGGTGGCCATCAAGCAGATGAACCTCCAGCAGCAGCCCAAGAAGGAGCTCATCATCAATGAGATCCTGGTGATGAGGGAAAACAAAAACCCCAACATAGTCAACTACCTGGACAGTTACCTGGTAGGGGATGAGCTGTGGGTAGTGATGGAGTACCTGGCTGGAGGCTCACTGACTGATGTCGTGACTGAGACCTGCATGGACGAGGGCCAGATCGCTGCAGTCTGCAGAGAGTGTCTGCAGGCTCTGGACTTTCTGCACTCCAACCAGGTGATCCACAGAGACATCAAGAGTGACAACATCCTGCTGGGCATGGACGGCTCGGTCAAGCTCACCGACTTCGGGTTCTGTGCCCAGATCACCCCAGAGCAGAACAAGCGCAGCACCATGGTGGGCACGCCCTACTGGATGGCACCCGAGGTGGTGACCCGCAAGGCCTACGGGCCCAAGGTTGACATCTGGTCCCTGGGTATCATGGCCATAGAGATGGTGGAGGGTGAACCTCCCTACCTGAATGAGAACCCTCTCAGAGCGCTGTACCTTATCGCCACCAACGGGACTCCAGAGCTCCAGAACCCTGAGCGATTGACCTCCGTGTTCAGAGACTTCCTCAACCGTTGCCTGGAGATGGACGTGGACCGCAGAGGCTCAGCCAAGGAGCTCCTCCAGCATTCGTTCCTGAAGTTAGCCAAGCCCCTGTCCAGCCTGAGCCCCCTGATTGTTGCAGCCAAGGAAGCCATCAAGAACAGCAGCCGCTAGGAGGCGCTGTGTGTCCACACACAGAGCTGGACCCTGCTCCATGGGGTTGTGAGACAGGCAGCACAGGGATAAACAGTAACCAACCCCCCCTGCTGCCTCATACAGAGGATGGACAGCTGGCCTACAGGGCCTCTCAGCGGCCGAGATGCTGCTACTGAATCACCTTCCTGCCTCCTCTTTTAGTCCGCCAGCATTCTGTACATGTGGAGCAGTCCATCGGtactgtgtaagtgtgtgtgtgtgtgtacgtgtgtgtatgtgcgtaagcttgtgtgtgtgtaagggtgtgtgtgtgtaagtgtgtgtgtcctgtgagGGGAGTAGATGCTCCttaacaa

Function

NR:

description
serine/threonine-protein kinase PAK 3 isoform X1

GO: NA

KEGG:

id description
K05733 PAK3, MRX30; p21-activated kinase 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990430.1 False 1926 mRNA 0.55 15 45327311 45350171
XM_021618666.2 True 2303 mRNA 0.54 16 45327311 45381903

Neighbor

gene id symbol gene type direction distance location
LOC110534028 LOC106603112 coding downstream 146148 45165618 ~ 45181163 (-)
LOC110534025 LOC106603111 coding downstream 309865 45011329 ~ 45017446 (-)
LOC110534024 LOC106603104 coding downstream 316364 45003241 ~ 45010947 (-)
LOC110533119 LOC106603113 coding downstream 349055 44878607 ~ 44978256 (-)
LOC118966783 LOC106578716 coding downstream 368478 44954424 ~ 44958833 (-)
LOC110534045 psmb6 coding upstream 233971 45615874 ~ 45629020 (-)
pold3 pold3 coding upstream 303352 45685255 ~ 45697214 (-)
LOC110534047 NA coding upstream 318386 45700289 ~ 45702447 (-)
wdr73 LOC106603095 coding upstream 326254 45708157 ~ 45710654 (-)
defbl2 NA coding upstream 331710 45713613 ~ 45715664 (-)
G893809 NA non-coding downstream 504 45323966 ~ 45326807 (-)
G893834 NA non-coding downstream 38798 45288152 ~ 45288513 (-)
G893782 NA non-coding downstream 46421 45193129 ~ 45280890 (-)
G893781 NA non-coding downstream 48789 45274474 ~ 45278522 (-)
G893822 NA non-coding downstream 63827 45262143 ~ 45263484 (-)
G893882 NA non-coding upstream 5904 45387807 ~ 45388036 (-)
G893885 NA non-coding upstream 7141 45389044 ~ 45389258 (-)
G894636 NA non-coding upstream 63562 45445465 ~ 45445714 (-)
G894640 NA non-coding upstream 74080 45455983 ~ 45456238 (-)
G894664 NA non-coding upstream 113670 45495573 ~ 45549686 (-)
G893541 NA other downstream 558239 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 1018378 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1118047 44199178 ~ 44209264 (-)
G892965 NA other downstream 1616342 43710485 ~ 43710969 (-)
LOC110534046 LOC107567170 other upstream 365412 45747090 ~ 45751405 (-)
G894917 NA other upstream 535376 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1848901 47203241 ~ 47234608 (-)
G896841 NA other upstream 2605858 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3499824 48881449 ~ 48907973 (-)

Expression


Co-expression Network