LOC110534037 (LOC106603102)


Basic Information

Item Value
gene id LOC110534037
gene name LOC106603102
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45445078 ~ 45450123 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618673.2
gtggctgtggtaactagtggaaatcATGAGAGGGGTTGGGAGCGTTTGTAAATCTGTTGTTTAGTCTTGTCTCTACAACATTCCGTTGATGAAAATATTTTGAACTAAATGGCGCTTATTGACCGTATACAGGTTTACAATACATTTTTAATAGGGAATTTCTCCAAATGGCGGGGAATAACACATTTAATTTCAGACCGGCAAATTATGGGACACCTATTTGTGTGTAAAACTAGGTCGACGTGAATTGGCCAACCCCCGCACGTATGTAATTGGTCAATTTTAGGAAGTCTGCCTAAAAATCGTAACCTTATTGGTTCTGAGGCATGTCTACGAGTGTAGCCCCTTAGCAAACGCTAAAACAACCCTTTGAACCTTTCAACCTGCGTGAGGTTGAGCTGTTGAGCTAGAAGTTAAACGGAGTTTGTTGTGTACAGCGAGCTTACAATCATAGTGAAATTCACCCAGAACTGGTTGTTTTATGAATTCTGGAGAGGCTTTTCTCCCAAACATAATGTTTGATTTCAACAGTGAAAAATAATATTAGCGAACAACCAAGCTATCAACGAAGCAGATGCTGCGGGGAACGCCAGGAACTCGGGAGGGAGTGTGACAGTTCAGCTTCACGGGAAGGCGGGGGAACGTATGGTGGTCCCATGTCAGCaccaaaaatattgagtggaagATGATAAAGATGTCTGTTGAAAAAGAGACTGTTCCAACCAGAAGTACGAAAGTGGACCCAGCACCACCTCTGCCACCCCAAAAACTCTCAGAATGCGTTGGAAGCTGCAACAATACCACCAAAGTCCCAGAGATCACCCTGTCCAACCCAGATAGCACTGATGGTGCTTCTACCTGCCCCATGCCAGACAGTGGGGCCCAAACCAAGCACAGCAGGTCTGCTGACCCCAACGACCAGACAGAGAGTGTTGGAAAGGAGACCATGGTGACTGAGCAGCACCTTAACCCAAAAAATGGCTTGCAGCAGCCCAAACAGCAACAGCAGAAACTCTCAAAGCGTCGCAGCACAATGAATGCAGGGTTCAAACATCCAGCAGGTAAGAGACGACGACGGGCCAACTCTGAGAGTGACTCGGTTCTGCCCACCAACTTcctgctgggaggaaacatattTGACCCGCTGAACCTCAACAGTCTGTTGGATGAGGACGTGAACAGGGCCCTGAACGCTGAGACACCCAGGTCCTCCCCACTGCCTGCCAAGAACCGCGACCCTGTAGAGATCCTCATTCCCAGGGATATCACTGACCCTCTCAACCTTAACTGCGGGATGGGAGGTAGGGGCCTCCTTGTGTCGCCCTTTAAGAGTGGCGGCAGGAGGAGACACCGCCACAGACaccatggaggaggtggtggggggTCCTCAGTCTCCGGGTTGGACCTGTCAGATTCAGAGAGAAGTGGTGAAGTGACCACCACTGCTTCTTCTCTAGCTAACCTGGCATCTGCTAGTGTTGCGTCTGCCTCAGTTTTCGAAGCAGCCAGTGTCCCAGCCATCTTGAACCCCCAGGGTGGTGATGGTAACAACATCAACCCCTCCAACTGCAGGGATGAGGCCACGCTCACTGTATCAGCCCCCCAGGCCCAGCCTCGAGCCCCGGAAGACTCCTCGGCAGCCACATCCGGAGGCCCGAACCAGCTCACTAGCCGGCCACGCAAACGCAGACGCAACTCTAGTAAAACAGACCCTCCTATGGCCCAATCTACTCCTATGTCCAGGTCAGGGACGGAGGAGAAGGGCCGTGGAGCTGGGCCCGGGAGAAACGCACAGTCTTCCTTCCAAACCCCAGTGGTAGGTCCCAGGGGGTCCTCCCAGCAACAGCAGCCCCATAACCAGCACAAACGACAGCAGCACCAAGGCAACAAAAAGAAGTTCCAGTATGGGAACTACAACAAGTACTATGGTTACCGCAAcccaggctgttctgaggacccGCGGTTCCATTGTCTGCGTCCAGAGTGGTTCCAGGGTAAAGCAGTGCTGGACCTGGGCTGCAACACGGGTCACCTGACACTGTGTATTGCTAAGAAGTTGCGGCCCGCACGCATATTGGGGTTGGACATTGACGGCGGTCTGGTGCACGCGGCCCGCCAGAACATCAGACACTACCTGTCAGAGCTGCAGGCCCAGGAGGCCCGGCGAActgcaggggaggaggagaagaccaATGGGCCggaagaggaaaggaaggaggagaaggcaaacggacaggaggagaggaaggaaggcgCGTCACACTCAGgcgaacaaacacacaaacaaaatgaAAGAGAGCACAGCAGGGCTGAGAATGGAAATGTCGAAAAGCAGGTGAGAAGCGACTGTGTCTCAGTGGAGGCAGCGGATGGTGTTTCGTTGTCGCGTTGCGCAGAGAGAAGAGATCAGGAGAGTGGGGCTGAGGAGAAGGACTCTGGAGCGCCTGCTGTTGAACTGGGGACAAGCTCCTTCCCGGTCTCCTTGCATATCTCCAGGGGGCCCATAGCAGCACCCCCACTCCCCAAAACACTCACCATGCCTCCCGGCGACTTCCCCTCCAATGTCTCTTTTATCAAGggGAACTATGTCTTGGAGAGTGATGCTCTGTTGCTGACCCAGCGACCAGAGTATGACGTCATCCTGTGCTTCAGCGTTACCAAGTGGGTCCACCTGAACTGGGGAGACGGTGGCCTGAAGCGCCTCTTCCACAGAGTGTTCAGACACCTGCGTCCTGGAGGCCTGTTCGTCCTGGAGCCACAGCCCTGGGTCACCTACGGCAAGAGAAAGAAACTCACGGATAGCATCTTTAGGAATTACCACAGCATCCGCCTCAAACCAGAACAGTTCTCCACATATCTGACATCTGAGGTGGGATTCTCCAGCTACGAGTTGATCGGGACTCCTAACAGTTCGTCAAGAGGTTTTCAAAGGCCAATCTACTTGTTTCATAAAGGAACATAATCTGCCTGGAAGTCCATTGAGCAGCATAAACCCAAACCACCATGAGACACCTTAATCTCCAGTCTGTAAGCATATATATCTCAACCCCAAACAGACTCCGTCAGCTTTCTACATGCCTGTACATTGATGCTGTGTTGTTTTGAAGGTAAGGAGTCCAAAACATGGCGCTAGATTCTATAAAACGACAATCTGATGGCTTCTCCACTCACCGAACTCCACTCCAGATGATGAGAAGCTTTGGGAAACTCAATCATGACTTTGGACTTTTTGCTCCCAATGCACAGGCTGTGTTCCCTATTTTTTTACTACTGTTTGTACTCTTGTTCAGTCAAGGAATATATTTGTTTCAGTTGGTTCATCAACATATCCAGCATTTTATTCAGAATGGACTGGCGAAACCCAACTTGAATCCTTTACATAAAAGTTATTTCCATGTTATGTCCAAATGGAACTCATGTAGGGACATTTCtcacactttttttatttttttaatagggTCAGTCTTTATTTTAACACTGTCCTTGAGTTCCTCTGTGTCCTAACTGACTGACTAGGAAAAGCAGTTTGTTTTCAATGTGACTTTGTGGATGAGTGTGGCCTGTCTTCAGTCTGCTCCTGGTCCGGATTGCATTCTTCCAGATGTCCTACTTTGCGTCCAGGGAATATTCCTGCCTCTTTCTATTGGTAGTTGATTCAAGAACAACTGTCAGTCAGGTGGAGTTGGCAATGCTGAGAGGATGATCAATGTTTTTACTTTGGCTATAATAAGAAGGATCAGTGTTTTGTTTGGTTTTACTCCTGTTCTGTCGATTGCTTTTGGtactttttctttctttcaatGGATTCGTGTCGTGTGTTCAATATGATTTAGTTGCTGCCAACTAATCATATGTAGTCTATTCATGGCCTCAGATTGGACTTTAATTGTTAATCCATCTCACTTTAACCCAGTCAATTCATAATGTAATGTTGTTTAAGCTTTACTCAATTCTTACGCTTAATACTTTGTTTACTATCACCAGCAGATGGGCAAATGCTGGTCTAGTTCTGATTTTGTtgaaatgttttaataaacaaatcaATTGAAATGCA
>XR_002475076.2
gtggctgtggtaactagtggaaatcATGAGAGGGGTTGGGAGCGTTTGTAAATCTGTTGTTTAGTCTTGTCTCTACAACATTCCGTTGATGAAAATATTTTGAACTAAATGGCGCTTATTGACCGTATACAGGTTTACAATACATTTTTAATAGGGAATTTCTCCAAATGGCGGGGAATAACACATTTAATTTCAGACCGGCAAATTATGGGACACCTATTTGTGTGTAAAACTAGGTCGACGTGAATTGGCCAACCCCCGCACGTATGTAATTGGTCAATTTTAGGAAGTCTGCCTAAAAATCGTAACCTTATTGGTTCTGAGGCATGTCTACGAGTGTAGCCCCTTAGCAAACGCTAAAACAACCCTTTGAACCTTTCAACCTGCGTGAGGTTGAGCTGTTGAGCTAGAAGTTAAACGGAGTTTGTTGTGTACAGCGAGCTTACAATCATAGTGAAATTCACCCAGAACTGGTTGTTTTATGAATTCTGGAGAGGCTTTTCTCCCAAACATAATGTTTGATTTCAACAGTGAAAAATAATATTAGCGAACAACCAAGCTATCAACGAAGCAGATGCTGCGGGGAACGCCAGGAACTCGGGAGGGAGTGTGACAGTTCAGCTTCACGGGAAGGCGGGGGAACGTATGGTGGTCCCATGTCAGCaccaaaaatattgagtggaagATGATAAAGATGTCTGTTGAAAAAGAGACTGTTCCAACCAGAAGTACGAAAGTGGACCCAGCACCACCTCTGCCACCCCAAAAACTCTCAGAATGCGTTGGAAGCTGCAACAATACCACCAAAGTCCCAGAGATCACCCTGTCCAACCCAGATAGCACTGATGGTGCTTCTACCTGCCCCATGCCAGACAGTGGGGCCCAAACCAAGCACAGCAGGTCTGCTGACCCCAACGACCAGACAGAGAGTGTTGGAAAGGAGACCATGGTGACTGAGCAGCACCTTAACCCAAAAAATGGCTTGCAGCAGCCCAAACAGCAACAGCAGAAACTCTCAAAGCGTCGCAGCACAATGAATGCAGGGTTCAAACATCCAGCAGGTAAGAGACGACGACGGGCCAACTCTGAGAGTGACTCGGTTCTGCCCACCAACTTcctgctgggaggaaacatattTGACCCGCTGAACCTCAACAGTCTGTTGGATGAGGACGTGAACAGGGCCCTGAACGCTGAGACACCCAGGTCCTCCCCACTGCCTGCCAAGAACCGCGACCCTGTAGAGATCCTCATTCCCAGGGATATCACTGACCCTCTCAACCTTAACTGCGGGATGGGAGGTAGGGGCCTCCTTGTGTCGCCCTTTAAGAGTGGCGGCAGGAGGAGACACCGCCACAGACaccatggaggaggtggtggggggTCCTCAGTCTCCGGGTTGGACCTGTCAGATTCAGAGAGAAGTGGTGAAGTGACCACCACTGCTTCTTCTCTAGCTAACCTGGCATCTGCTAGTGTTGCGTCTGCCTCAGTTTTCGAAGCAGCCAGTGTCCCAGCCATCTTGAACCCCCAGGGTGGTGATGGTAACAACATCAACCCCTCCAACTGCAGGGATGAGGCCACGCTCACTGTATCAGCCCCCCAGGCCCAGCCTCGAGCCCCGGAAGACTCCTCGGCAGCCACATCCGGAGGCCCGAACCAGCTCACTAGCCGGCCACGCAAACGCAGACGCAACTCTAGTAAAACAGACCCTCCTATGGCCCAATCTACTCCTATGTCCAGGTCAGGGACGGAGGAGAAGGGCCGTGGAGCTGGGCCCGGGAGAAACGCACAGTCTTCCTTCCAAACCCCAGTGGTAGGTCCCAGGGGGTCCTCCCAGCAACAGCAGCCCCATAACCAGCACAAACGACAGCAGCACCAAGGCAACAAAAAGAAGTTCCAGTATGGGAACTACAACAAGTACTATGGTTACCGCAAcccaggctgttctgaggacccGCGGTTCCATTGTCTGCGTCCAGAGTGGTTCCAGGGTAAAGCAGTGCTGGACCTGGGCTGCAACACGGGTCACCTGACACTGTGTATTGCTAAGAAGTTGCGGCCCGCACGCATATTGGGGTTGGACATTGACGGCGGTCTGGTGCACGCGGCCCGCCAGAACATCAGACACTACCTGTCAGAGCTGCAGGCCCAGGAGGCCCGGCGAActgcaggggaggaggagaagaccaATGGGCCggaagaggaaaggaaggaggagaaggcaaacggacaggaggagaggaaggaaggcgCGTCACACTCAGgcgaacaaacacacaaacaaaatgaAAGAGAGCACAGCAGGGCTGAGAATGGAAATGTCGAAAAGCAGGTGAGAAGCGACTGTGTCTCAGTGGAGGCAGCGGATGGTGTTTCGTTGTCGCGTTGCGCAGAGAGAAGAGATCAGGAGAGTGGGGCTGAGGAGAAGGACTCTGGAGCGCCTGCTGTTGAACTGGGGACAAGCTCCTTCCCGGTCTCCTTGCATATCTCCAGGGGGCCCATAGCAGCACCCCCACTCCCCAAAACACTCACCATGCCTCCCGGCGACTTCCCCTCCAATGTCTCTTTTATCAAGggGAACTATGTCTTGGAGAGTGATGCTCTGTTGCTGACCCAGCGACCAGAGTATGACGTCATCCTGTGCTTCAGCGTTACCAAGTGGGTCCACCTGAACTGGGGAGACGGTGGCCTGAAGCGCCTCTTCCACAGAGTGTTCAGACACCTGCGTCCTGGAGGCCTGTTCGTCCTGGAGCCACAGCCCTGGGTCACCTACGGCAAGAGAAAGAAACTCACGGATAGCATCTTTAGGAATTACCACAGCATCCGCCTCAAACCAGAACAGTTCTCCACATATCTGACATCTGAGGTGGGATTCTCCAGCTACGAGTTGATCGGGACTCCTAACAGTTCGTCAAGAGGTTTTCAAAGGCCAATCTACTTGTTTCATAAAGGAACATAATCTGCCTGGAAGTCCATTGAGCAGCATAAACCCAAACCACCATGAGACACCTTAATCTCCAGTCTGTAAGGAGTCCAAAACATGGCGCTAGATTCTATAAAACGACAATCTGATGGCTTCTCCACTCACCGAACTCCACTCCAGATGATGAGAAGCTTTGGGAAACTCAATCATGACTTTGGACTTTTTGCTCCCAATGCACAGGCTGTGTTCCCTATTTTTTTACTACTGTTTGTACTCTTGTTCAGTCAAGGAATATATTTGTTTCAGTTGGTTCATCAACATATCCAGCATTTTATTCAGAATGGACTGGCGAAACCCAACTTGAATCCTTTACATAAAAGTTATTTCCATGTTATGTCCAAATGGAACTCATGTAGGGACATTTCtcacactttttttatttttttaatagggTCAGTCTTTATTTTAACACTGTCCTTGAGTTCCTCTGTGTCCTAACTGACTGACTAGGAAAAGCAGTTTGTTTTCAATGTGACTTTGTGGATGAGTGTGGCCTGTCTTCAGTCTGCTCCTGGTCCGGATTGCATTCTTCCAGATGTCCTACTTTGCGTCCAGGGAATATTCCTGCCTCTTTCTATTGGTAGTTGATTCAAGAACAACTGTCAGTCAGGTGGAGTTGGCAATGCTGAGAGGATGATCAATGTTTTTACTTTGGCTATAATAAGAAGGATCAGTGTTTTGTTTGGTTTTACTCCTGTTCTGTCGATTGCTTTTGGtactttttctttctttcaatGGATTCGTGTCGTGTGTTCAATATGATTTAGTTGCTGCCAACTAATCATATGTAGTCTATTCATGGCCTCAGATTGGACTTTAATTGTTAATCCATCTCACTTTAACCCAGTCAATTCATAATGTAATGTTGTTTAAGCTTTACTCAATTCTTACGCTTAATACTTTGTTTACTATCACCAGCAGATGGGCAAATGCTGGTCTAGTTCTGATTTTGTtgaaatgttttaataaacaaatcaATTGAAATGCA

Function

NR:

description
7SK snRNA methylphosphate capping enzyme-like

GO: NA

KEGG:

id description
K15190 MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618673.2 False 4054 mRNA 0.49 5 45445078 45450123
XR_002475076.2 True 3974 mRNA 0.49 6 45445078 45450123

Neighbor

gene id symbol gene type direction distance location
LOC118936925 LOC106603184 coding upstream 1731 45438191 ~ 45443347 (+)
LOC118937071 NA coding upstream 82792 45362233 ~ 45362286 (+)
LOC110534030 LOC106603107 coding upstream 119204 45290557 ~ 45326891 (+)
LOC110534029 LOC106603110 coding upstream 168108 45200684 ~ 45276970 (+)
LOC110534924 NA coding upstream 289414 45154412 ~ 45155664 (+)
LOC110534036 LOC106563427 coding downstream 9537 45459660 ~ 45549430 (+)
LOC110534033 LOC106603099 coding downstream 103358 45553481 ~ 45592329 (+)
LOC110534042 LOC106603097 coding downstream 172041 45622164 ~ 45654911 (+)
LOC110534038 chrdl2 coding downstream 216241 45666364 ~ 45673837 (+)
LOC118966785 NA coding downstream 252122 45702245 ~ 45703069 (+)
G893881 NA non-coding upstream 57343 45387441 ~ 45387735 (+)
G893880 NA non-coding upstream 57708 45387122 ~ 45387370 (+)
G893876 NA non-coding upstream 60355 45384517 ~ 45384723 (+)
G892607 NA non-coding upstream 164185 45193997 ~ 45280893 (+)
G893991 NA non-coding downstream 149659 45599782 ~ 45599984 (+)
G893999 NA non-coding downstream 157859 45607982 ~ 45608316 (+)
G894002 NA non-coding downstream 162458 45612581 ~ 45612904 (+)
G894005 LOC106603098 non-coding downstream 167140 45617263 ~ 45618561 (+)
G894006 NA non-coding downstream 168499 45618622 ~ 45618937 (+)
G892499 LOC106603104 other upstream 434229 45008834 ~ 45010849 (+)
G892191 NA other upstream 785587 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1363668 44077660 ~ 44081410 (+)
G891951 LOC106603153 other upstream 1504521 43938412 ~ 43940557 (+)
G891856 NA other upstream 1701588 43742917 ~ 43743490 (+)
LOC110534056 LOC106603182 other downstream 450922 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 666162 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 1177169 46627292 ~ 46700540 (+)

Expression


Co-expression Network