LOC110534045 (psmb6)


Basic Information

Item Value
gene id LOC110534045
gene name psmb6
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45615874 ~ 45629020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990443.1
GGCCGTTCTGAAAATGCTTTTAGTACACATGATTTTGTACCAGAATGGGCACAAGAAGAAGTTAGCACTGGGGTGAGGAAATTGAATATAGCACCGTTCATCTTACATATCTTTAAACAACCATAATGGCAGTGGAGTTTGATGGAGGGGTTGTGATTGGTGCTGACTCCCGAACAACAACAGGCGCTTACATTGCCAATCGAGTTACTGACAAGTTGACTCCCATTCACGACCACATCTTCTGCTGCCGCTCTGGGTCTGCAGCTGACACACAGGCTGTTGCTGATGCAGTCACCTACCAGCTGGGCTTTCACAGTATTGAGCTGGATGAGCCTCCACTTGTGCAAACGGCAGCAAACCTCTTCCAGCAGATGTgctacagatacagagaggagctGATGGCTGGCATCATTGTGGCTGGCTGGGACAAAAGAAGGGGTGGACAGGTGTACACAGTCCCAATGGGAGGGATGATAGTGAGGCAACCAGTGTCAGTAGGGGGTTCTGGTAGCTCCTACATCTATGGCTTCATGGATTCTAACTACAAGCCTGGAATGACCAAGGAAGAGTGCCTTCACTTCTGTACCCAGGCCCTGGCGCTTGCCATGGAGCGGGATGGTTCTAGTGGAGGAGTGGCCCGTCTGGCAGCCATCACAGAGGAGGGCCTGGAGAGACGGGTTGTTTTGGGACACCAGCTGCCCAAATTCTCCAACACCTAGACAAGGAGCAGAGGGAAGTTGCTGTGCagacaatgccccccccccccccccccttcaagtCCATTCACATAACCTTTAAAACCTAGTCCAGTGTTGTTTTTATAAAGTAAAATCTGGttgtaataaataaatactgaAACGTGAA
>XM_036990441.1
AACAGAATATGTTAAACTAAACCTGTCCACCAGCAAAGAAGAGCATTATTTAACTGTTCAAGATGGCTGCGTACATGTCAGCGGGCCGTTCTGAAAATGCTTTTAGTACACATGATTTTGTACCAGAATGGGCACAAGAAGAAGTTAGCACTGGGACAACCATAATGGCAGTGGAGTTTGATGGAGGGGTTGTGATTGGTGCTGACTCCCGAACAACAACAGGCGCTTACATTGCCAATCGAGTTACTGACAAGTTGACTCCCATTCACGACCACATCTTCTGCTGCCGCTCTGGGTCTGCAGCTGACACACAGGCTGTTGCTGATGCAGTCACCTACCAGCTGGGCTTTCACAGTATTGAGCTGGATGAGCCTCCACTTGTGCAAACGGCAGCAAACCTCTTCCAGCAGATGTgctacagatacagagaggagctGATGGCTGGCATCATTGTGGCTGGCTGGGACAAAAGAAGGGGTGGACAGGTGTACACAGTCCCAATGGGAGGGATGATAGTGAGGCAACCAGTGTCAGTAGGGGGTTCTGGTAGCTCCTACATCTATGGCTTCATGGATTCTAACTACAAGCCTGGAATGACCAAGGAAGAGTGCCTTCACTTCTGTACCCAGGCCCTGGCGCTTGCCATGGAGCGGGATGGTTCTAGTGGAGGAGTGGCCCGTCTGGCAGCCATCACAGAGGAGGGCCTGGAGAGACGGGTTGTTTTGGGACACCAGCTGCCCAAATTCTCCAACACCTAGACAAGGAGCAGAGGGAAGTTGCTGTGCagacaatgccccccccccccccccccttcaagtCCATTCACATAACCTTTAAAACCTAGTCCAGTGTTGTTTTTATAAAGTAAAATCTGGttgtaataaataaatactgaAACGTGAA
>XM_036990442.1
GAAGATGCTTGCTATATGTTTTTGCTACAAATTAAAAAGACAACCATAATGGCAGTGGAGTTTGATGGAGGGGTTGTGATTGGTGCTGACTCCCGAACAACAACAGGCGCTTACATTGCCAATCGAGTTACTGACAAGTTGACTCCCATTCACGACCACATCTTCTGCTGCCGCTCTGGGTCTGCAGCTGACACACAGGCTGTTGCTGATGCAGTCACCTACCAGCTGGGCTTTCACAGTATTGAGCTGGATGAGCCTCCACTTGTGCAAACGGCAGCAAACCTCTTCCAGCAGATGTgctacagatacagagaggagctGATGGCTGGCATCATTGTGGCTGGCTGGGACAAAAGAAGGGGTGGACAGGTGTACACAGTCCCAATGGGAGGGATGATAGTGAGGCAACCAGTGTCAGTAGGGGGTTCTGGTAGCTCCTACATCTATGGCTTCATGGATTCTAACTACAAGCCTGGAATGACCAAGGAAGAGTGCCTTCACTTCTGTACCCAGGCCCTGGCGCTTGCCATGGAGCGGGATGGTTCTAGTGGAGGAGTGGCCCGTCTGGCAGCCATCACAGAGGAGGGCCTGGAGAGACGGGTTGTTTTGGGACACCAGCTGCCCAAATTCTCCAACACCTAGACAAGGAGCAGAGGGAAGTTGCTGTGCagacaatgccccccccccccccccccttcaagtCCATTCACATAACCTTTAAAACCTAGTCCAGTGTTGTTTTTATAAAGTAAAATCTGGttgtaataaataaatactgaAACGTGAA

Function

symbol description
psmb6 Predicted to enable threonine-type endopeptidase activity. Predicted to be involved in proteasomal protein catabolic process. Predicted to act upstream of or within proteolysis involved in cellular protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome core complex, beta-subunit complex. Orthologous to human PSMB6 (proteasome 20S subunit beta 6).

NR:

description
proteasome subunit beta type-6-like

GO: NA

KEGG:

id description
K02738 PSMB6; 20S proteasome subunit beta 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990443.1 False 864 mRNA 0.50 6 45615874 45618337
XM_036990441.1 False 903 mRNA 0.50 6 45615874 45618420
XM_036990442.1 True 787 mRNA 0.51 6 45615874 45629020

Neighbor

gene id symbol gene type direction distance location
LOC110534031 LOC106603108 coding downstream 233971 45327311 ~ 45381903 (-)
LOC110534028 LOC106603112 coding downstream 434711 45165618 ~ 45181163 (-)
LOC110534025 LOC106603111 coding downstream 598428 45011329 ~ 45017446 (-)
LOC110534024 LOC106603104 coding downstream 604927 45003241 ~ 45010947 (-)
LOC110533119 LOC106603113 coding downstream 637618 44878607 ~ 44978256 (-)
pold3 pold3 coding upstream 56235 45685255 ~ 45697214 (-)
LOC110534047 NA coding upstream 71269 45700289 ~ 45702447 (-)
wdr73 LOC106603095 coding upstream 79137 45708157 ~ 45710654 (-)
defbl2 NA coding upstream 84593 45713613 ~ 45715664 (-)
LOC110534044 tm45b coding upstream 112800 45741820 ~ 45746587 (-)
G894740 NA non-coding downstream 6075 45609420 ~ 45609799 (-)
G894738 NA non-coding downstream 7128 45608196 ~ 45608746 (-)
G894728 NA non-coding downstream 22565 45592989 ~ 45593309 (-)
G894727 LOC106603099 non-coding downstream 26066 45589484 ~ 45589808 (-)
G894724 NA non-coding downstream 26499 45588899 ~ 45589375 (-)
G894767 LOC106603097 non-coding upstream 21458 45650478 ~ 45650861 (-)
G894772 NA non-coding upstream 26939 45655959 ~ 45656873 (-)
G894773 NA non-coding upstream 28200 45657220 ~ 45657474 (-)
G894775 NA non-coding upstream 29915 45658935 ~ 45659147 (-)
G894776 NA non-coding upstream 30282 45659302 ~ 45659637 (-)
G893541 NA other downstream 846802 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 1306941 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1406610 44199178 ~ 44209264 (-)
G892965 NA other downstream 1904905 43710485 ~ 43710969 (-)
LOC110534046 LOC107567170 other upstream 118295 45747090 ~ 45751405 (-)
G894917 NA other upstream 288259 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1601784 47203241 ~ 47234608 (-)
G896841 NA other upstream 2358741 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3252707 48881449 ~ 48907973 (-)

Expression


Co-expression Network