LOC110534038 (chrdl2)


Basic Information

Item Value
gene id LOC110534038
gene name chrdl2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45666364 ~ 45673837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618674.2
CCTGTAGGAGGCGCCTTCGTGAAAACCAATGATAAATTCATGATTTTATGGGGAGTTTCACACGGTCCTGGGGTTTGCTGTCGCAGTTGCTGCTATTTCATTTCATATTGACAAGCAACATGAAGCATATTTTCTTATTAATTTGCATACGTGTGTTCGTTGGTTGTGGCGGTGATGTTATAAGAACAAGGAAAGTGTCTTCAGTTTTCTGTACTTTCAAAGAGAAAACGTACAGTCCAGGAGACAGCTGGCATCCTTATCTGGAACCCTTTGGATTCATGTTTTGTATGCGCTGTTCCTGCACTAAGACAGGCCATGTGAAATGTAACACAATTAAGTGTCCTACTCTGCAGTGTGAGAACTCAGTGACTGACTCTGAGCAGTGCTGCCCTCGCTGTACAGATGAGCCTAGGATTCCAGCTGGCCTGAGAGCCCCGGTGAAGTCCTGCAAGTATAATGGAACTATCTACCAACCAGGGGACACCTTTGCCAACCACGACCTCTTCCCATCTCGCCAAACCAGCCAGTGTGTCATGTGTACATGTTCTAATGGAAATATCTTCTGTGCTCTGAAAACTTGCCAGCCACTGACCTGCTCCTCGCCATTCTCAGTCCCAGATACCTGCTGTCTAGTGTGTAAAGATGGCGGCATTAATGGGTACACATCAGTGGAGCATAGAGGCCAACAGCTGAACCGAGGCGTGAGGCATTCATTGGACCAGTGTGCTGGAGAGCAGCTCCAAGGGCGCTCTGTCCGTTCTACTCCATCCACAGTCAGGGGTACTCCCAGAGGCCTGAGCCTGTCCAAACTCCACTTCAAAGGTGCTGCAGAGACCACTGTGAATTTCCTGCTGCAGAAAAACCACCAGAAGGCATGCCAATACAGCGGCAAGACCTACTCTCATGGTGATGTGTGGCACCCAGTCCTGGGGAAGGTCCTGGAGTGCATCCTGTGTACCTGTAAGGATGGCATGCAGGACTGCAAACGCCTCACATGTCCCAGCCAGTATCCATGCCAACATCCCATGAAAACCGAGGGGAAGTGCTGCAAGATTTGTCCAGAACTTAAAACTGAGAGCAACGGGACTGACTGTTACATGAACACGAATCTTGGACATGACTATAACAAACTCTCGGTGTACAAAGTTAAGCCGCCGTCAAAGGATCGGACCGAGGACACCGTTAGGATAATTGCTATTGAAAGTCAAGGGACTGCTGAAGTTGAAGTGCAAGTATGGAAGACTGTAGGAGGAGTTTTACAATTAATGGAAACGGGAGAAGTTCTGAAGAAAGATCTTCTAGATAATCCAGATAACTACACCTTACTGGCAACATTAGATGAAGAGACTTGGAAAAGATTCAAGGAGGAAGAAGACAATCAGAAGAGATTTCCCAATCCCAGGACCTGTGAGGATGGGATCAAGGAGTTGCGAGGCGTTCTTGCACGTAACGACGAGGCTAAACGTTATGATATTGTTGAGCTCTACCTGAGGCGAGAATTCCAGCGCAAGACGGGCTGTTGTTTCTCCTTTGACTATCCTCCAGTGAACACAGTCGACCAGGAGGATTTCGGCTTAATAAATTGTGCCTGTAATTTCGATTTGTTCTCCAGTGTTATAGTTTGTTTTCTCAAGGGTTGTAATGGCCTAACGGAGATGAGCACAACAATAGAGCACTGTTCATTTGATATATGTAAGTCAGGAGTTGGAAGGACACCAACATTTTCCAATAAAGAGAACTGAAGAAGAGATGTCTCCGGGAAGGAATTATATTGAAAAATAAGAATAATATTGCTGGAGGCCCCAGTCTTTTGAAAAAAAAAGGTGTAGAGCACAACTGTAACAGGATTGTCAAGTAGTTAAACATAATTTGATTATTTGCAGGATGTATAATCTACCAAAACCAAGAAAAATAAACCCTTGGTCTTTATAAA
>XM_021618677.2
CTGTAGGAGGCGCCTTCGTGAAAACCAATGATAAATTCATGATTTTATGGGGAGTTTCACACGGTCCTGGGGTTTGCTGTCGCAGTTGCTGCTATTTCATTTCATATTGACAAGCAACATGAAGCATATTTTCTTATTAATTTGCATACGTGTGTTCGTTGGTTGTGGCGGTGATGTTATAAGAACAAGGAAAGTGTCTTCAGTTTTCTGTACTTTCAAAGAGAAAACGTACAGTCCAGGAGACAGCTGGCATCCTTATCTGGAACCCTTTGGATTCATGTTTTGTATGCGCTGTTCCTGCACTAAGACAGGCCATGTGAAATGTAACACAATTAAGTGTCCTACTCTGCAGTGTGAGAACTCAGTGACTGACTCTGAGCAGTGCTGCCCTCGCTGTACAGATGAGCCTAGGATTCCAGCTGGCCTGAGAGCCCCGGTGAAGTCCTGCAAGTATAATGGAACTATCTACCAACCAGGGGACACCTTTGCCAACCACGACCTCTTCCCATCTCGCCAAACCAGCCAGTGTGTCATGTGTACATGTTCTAATGGAAATATCTTCTGTGCTCTGAAAACTTGCCAGCCACTGACCTGCTCCTCGCCATTCTCAGTCCCAGATACCTGCTGTCTAGTGTGTAAAGATGGCGGCATTAATGGGTACACATCAGTGGAGCATAGAGGCCAACAGCTGAACCGAGGCGTGAGGCATTCATTGGACCAGTGTGCTGGAGAGCAGCTCCAAGGGCGCTCTGTCCGTTCTACTCCATCCACAGTCAGGGGTACTCCCAGAGGCCTGAGCCTGTCCAAACTCCACTTCAAAGGTGCTGCAGAGACCACTGTGAATTTCCTGCTGCAGAAAAACCACCAGAAGGCATGCCAATACAGCGGCAAGACCTACTCTCATGGTGATGTGTGGCACCCAGTCCTGGGGAAGGTCCTGGAGTGCATCCTGTGTACCTGTAAGGATGGCATGCAGGACTGCAAACGCCTCACATGTCCCAGCCAGTATCCATGCCAACATCCCATGAAAACCGAGGGGAAGTGCTGCAAGATTTGTCCAGAACTTAAAACTGAGAGCAACGGGACTGACTGTTACATGAACACGAATCTTGGACATGACTATAACAAACTCTCGGTGTACAAAGTTAAGCCGCCGTCAAAGGATCGGACCGAGGACACCGTTAGGATAATTGCTATTGAAAGTCAAGGGACTGCTGAAGTTGAAGTGCAAGTATGGAAGACTGTAGGAGGAGTTTTACAATTAATGGAAACGGGAGAAGTTCTGAAGAAAGATCTTCTAGATAATCCAGATAACTACACCTTACTGGCAACATTAGATGAAGAGACTTGGAAAAGATTCAAGGAGGAAGAAGACAATCAGAAGAGATTTCCCAATCCCAGGACCTGTGAGGATGGGATCAAGGAGGTAGTGAAGTTCTTGTATCCAGACCAGCTGTGCTCATCTTAACTTTCATTCTCTGACTTTGAAGTTACATATTTACTACAGAGGACATCGGTGGAAAATGCACAGCATTCATATctatttcattaaacatgaagCAAAGCATTGCTTATTGGTTAGAGAATAACAAGCTTTTGTTTCTTTTTAAATGTCAACATAACTCATAACAATGTGATGTCCCATATTCTCAGTAACAACATCGTTGGTAGCATTTTGGTAGCAGAAGACACAAAAATAGGGGAGAAAATGCTTTAAATTCATCGCAGTTATCTCATTTTTGTTTTATGGCATGCTGGAATACAGTAAATCTGGTATTATCTAAAAATACAGGTGTACATGTATATATTAGAAAAATACTGCCAACTGGCCATAGCATGTTTTTATAGAGTAGACTATTTTCACAATCACTTTACTCTTCTGCTAAATACTGCTGTTTGAAACCATATGCCTTTTCTGAATGTACCAAGAAATATTAATCAACATATTTATTGTAAATACAAATATGTTAACATATGTCATTTTGGCAGAGCGTATAATATTGGTTTGTTTGATATGTTTGTACATTATGTATACATTTGAGTGTGTACTGGAAGGTCCTTGTCTTGCTTTAGCTCATTGGGCTATACACTAGTAATTTCTGCAGAAAATGTGGGTTTGTTATCTATGCATTGGTATGGCCCTGAAAAAGTGTTCGTATGTATTCTTTCATGAGAGTGGTTTACTTTGGTTTGGGGAAGCCACTTTCCATTATGTTCTCTGATATATTTGTCATTGTGCTAGGTCAGTTTTCTGCAGGTGAATTTTCCATATGATTCTGTGCGATTTCAGTGCTTGATGTACGTCTTTCCCTTTTGCACAGTTGCGAGGCGTTCTTGCACGTAACGACGAGGCTAAACGTTATGATATTGTTGAGCTCTACCTGAGGCGAGAATTCCAGCGCAAGACGGGCTGTTGTTTCTCCTTTGACTATCCTCCAGTGAACACAGTCGACCAGGAGGATTTCGGCTTAATAAATTGTGCCTGTAATTTCGA
>XM_021618676.2
CAAATCTAAAGTTAAATCGTTACCTGCAACTGATGAAATGCGTCTATGATGTAGTTGAAAACAACATTTAACATTCTGCGTTTTACTATATGAATACACAACAACCGCTACTTGCGATGATCAATTTTGCGTTGTTTTTAATCTTCTGACTTTCATCATTGCAACTTTTTTTTCTATATTTGGCAAGTGTACACAGTGCGTGTATTTCTGTCATATCTATAAGTGTCTTCAGTTTTCTGTACTTTCAAAGAGAAAACGTACAGTCCAGGAGACAGCTGGCATCCTTATCTGGAACCCTTTGGATTCATGTTTTGTATGCGCTGTTCCTGCACTAAGACAGGCCATGTGAAATGTAACACAATTAAGTGTCCTACTCTGCAGTGTGAGAACTCAGTGACTGACTCTGAGCAGTGCTGCCCTCGCTGTACAGATGAGCCTAGGATTCCAGCTGGCCTGAGAGCCCCGGTGAAGTCCTGCAAGTATAATGGAACTATCTACCAACCAGGGGACACCTTTGCCAACCACGACCTCTTCCCATCTCGCCAAACCAGCCAGTGTGTCATGTGTACATGTTCTAATGGAAATATCTTCTGTGCTCTGAAAACTTGCCAGCCACTGACCTGCTCCTCGCCATTCTCAGTCCCAGATACCTGCTGTCTAGTGTGTAAAGATGGCGGCATTAATGGGTACACATCAGTGGAGCATAGAGGCCAACAGCTGAACCGAGGCGTGAGGCATTCATTGGACCAGTGTGCTGGAGAGCAGCTCCAAGGGCGCTCTGTCCGTTCTACTCCATCCACAGTCAGGGGTACTCCCAGAGGCCTGAGCCTGTCCAAACTCCACTTCAAAGGTGCTGCAGAGACCACTGTGAATTTCCTGCTGCAGAAAAACCACCAGAAGGCATGCCAATACAGCGGCAAGACCTACTCTCATGGTGATGTGTGGCACCCAGTCCTGGGGAAGGTCCTGGAGTGCATCCTGTGTACCTGTAAGGATGGCATGCAGGACTGCAAACGCCTCACATGTCCCAGCCAGTATCCATGCCAACATCCCATGAAAACCGAGGGGAAGTGCTGCAAGATTTGTCCAGAACTTAAAACTGAGAGCAACGGGACTGACTGTTACATGAACACGAATCTTGGACATGACTATAACAAACTCTCGGTGTACAAAGTTAAGCCGCCGTCAAAGGATCGGACCGAGGACACCGTTAGGATAATTGCTATTGAAAGTCAAGGGACTGCTGAAGTTGAAGTGCAAGTATGGAAGACTGTAGGAGGAGTTTTACAATTAATGGAAACGGGAGAAGTTCTGAAGAAAGATCTTCTAGATAATCCAGATAACTACACCTTACTGGCAACATTAGATGAAGAGACTTGGAAAAGATTCAAGGAGGAAGAAGACAATCAGAAGAGATTTCCCAATCCCAGGACCTGTGAGGATGGGATCAAGGAGTTGCGAGGCGTTCTTGCACGTAACGACGAGGCTAAACGTTATGATATTGTTGAGCTCTACCTGAGGCGAGAATTCCAGCGCAAGACGGGCTGTTGTTTCTCCTTTGACTATCCTCCAGTGAACACAGTCGACCAGGAGGATTTCGGCTTAATAAATTGTGCCTGTAATTTCGATTTGTTCTCCAGTGTTATAGTTTGTTTTCTCAAGGGTTGTAATGGCCTAACGGAGATGAGCACAACAATAGAGCACTGTTCATTTGATATATGTAAGTCAGGAGTTGGAAGGACACCAACATTTTCCAATAAAGAGAACTGAAGAAGAGATGTCTCCGGGAAGGAATTATATTGAAAAATAAGAATAATATTGCTGGAGGCCCCAGTCTTTTGAAAAAAAAAGGTGTAGAGCACAACTGTAACAGGATTGTCAAGTAGTTAAACATAATTTGATTATTTGCAGGATGTATAATCTACCAAAACCAAGAAAAATAAACCCTTGGTCTTTATAAA

Function

symbol description
chrdl2 Acts upstream of or within dorsal/ventral pattern formation. Is expressed in hindbrain; midbrain; and tail bud. Human ortholog(s) of this gene implicated in megalocornea. Orthologous to several human genes including CHRDL2 (chordin like 2).

NR:

description
chordin-like protein 2 isoform X1

GO: NA

KEGG:

id description
K17280 CHRDL2; chordin-like protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618674.2 False 1933 mRNA 0.46 12 45666364 45673837
XM_021618677.2 False 2494 mRNA 0.43 11 45666365 45673504
XM_021618676.2 True 1961 mRNA 0.45 12 45666576 45673837

Neighbor

gene id symbol gene type direction distance location
LOC110534042 LOC106603097 coding upstream 11453 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 coding upstream 74035 45553481 ~ 45592329 (+)
LOC110534036 LOC106563427 coding upstream 116934 45459660 ~ 45549430 (+)
LOC110534037 LOC106603102 coding upstream 216241 45445078 ~ 45450123 (+)
LOC118936925 LOC106603184 coding upstream 223017 45438191 ~ 45443347 (+)
LOC118966785 NA coding downstream 28408 45702245 ~ 45703069 (+)
LOC110534041 LOC106603094 coding downstream 31536 45705373 ~ 45708059 (+)
LOC118936928 NA coding downstream 42536 45716373 ~ 45716966 (+)
LOC110534032 LOC106603093 coding downstream 50980 45724817 ~ 45740843 (+)
LOC110534034 LOC106603091 coding downstream 85863 45759700 ~ 45770162 (+)
G894021 NA non-coding upstream 8316 45657818 ~ 45658048 (+)
G894007 NA non-coding upstream 46234 45619903 ~ 45620130 (+)
G894006 NA non-coding upstream 47427 45618622 ~ 45618937 (+)
G894005 LOC106603098 non-coding upstream 47803 45617263 ~ 45618561 (+)
G894028 NA non-coding downstream 2765 45676602 ~ 45676897 (+)
G894037 NA non-coding downstream 15901 45689738 ~ 45747021 (+)
G894068 NA non-coding downstream 110832 45784669 ~ 45785365 (+)
G894067 NA non-coding downstream 111686 45785523 ~ 45785778 (+)
G894070 LOC106603090 non-coding downstream 114337 45788174 ~ 45788596 (+)
G892499 LOC106603104 other upstream 655515 45008834 ~ 45010849 (+)
G892191 NA other upstream 1006873 44655558 ~ 44659491 (+)
LOC110533983 LOC106603147 other upstream 1584954 44077660 ~ 44081410 (+)
LOC110534056 LOC106603182 other downstream 227208 45898515 ~ 45901940 (+)
G894204 LOC100136012 other downstream 442448 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 953455 46627292 ~ 46700540 (+)
G895515 NA other downstream 1366677 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1468207 47132135 ~ 47151549 (+)

Expression


Co-expression Network