LOC110534047


Basic Information

Item Value
gene id LOC110534047
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45700289 ~ 45702447 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475077.2
GCCAACCTGAAAAGGTCAGTCATAGTGTCAAAACGTAGTATTATTCCCGTCCACAGTATGGTAAATGAAAGAAAacagtgtagtacattacagtgcaTAATGCACACCTACCTGCATATCTGGAAACTGCCGTGGTaatacacggagtgtacaaaacattgagaacacctgctcttccatgacatagaccagTGATTCTCAACTTCGGTCCTCGAGtatccccaacagtacacatttttattgtagccccggacaagcacacctgattcaatttgacaactaatcatcaggccctaaatgagttgaatcaggtcgTGCTTGTCCAGGGCTATAACAAAAATGTGTGCTTTTGGGGATACTCGAGGACCGGAGTTGAGAATCACTgacctagactgaccaggtgaatgctatgatcccttattgatttcaaTTGTtagatccacttcaatcagtgtagatgaagaggaggagacaggttaaagaaggatatttaagctttgagacaattgaaacatggattgtctatgtgtgccattcaaagggtgaatgggcaagacaaaaaaaatattgaagTGGCTTTGAACAGGGTGTGGTAGTGGTGAAACTTAACATTAGGAAGGTGCACTTAATgctttgtaaactcagtgtaggTCTTTGTCTGTTTTTTGACTACAGCATTTACACCTGCAGGAGAACCACATCTCAGTAGTACCGAAGGTGTTACCGAGGAACCTGCAACAGAAGGGATATTTGTAACACCAGCAGGTGTGTCTGGAACAAAATTGTGATGAACAGGACTTCGGGAATCCTCCTGTCTCTGAGGGGTTGGATACTGAATACATTAATGGATGAGTGTGGTCAATCCAAAAACGATTCCCCCACTCACATTCCTTGATGCTGGAGCTGAGGACAGAGGAATTGTATGGAGCGTACGGTTTGCTACTACCAGAGCTTTGTTTCCTCAATGTGGCTGATCATAAGATTGTTGAGGAAGAAGCActgtctgtagctgtgttttcctatgcTCAATGAGCTTGTTATTCACTCCAACCCACTGACCACACGGGGGAAGTGGTGACCCACGTACTGCTGACTGACTTCCTCCACGAAAGGCTGGGTATTAGAATTAGGTGCAAGAAGACATCGGGGCTGGTTTCCAAGACCCAGATTCAGCCTTGACTAAAATACATCCTCAATAGACTCTCCATTGAAAatactttttagtccaggactaggctttcagtgtctaggaaactggcacCAGACGTTGTGAAACCACCTTTTGATATTATGTATTGATTCCAAACGACAGGTTCAAATgcaaaaacaattgaatccacaTTTTGGCTTTGCATTCACCTGGAAAGTTAAATATGACTGCAGtcttcatttcaatattttggtaaacgctgcattttggtctaaGTGACTCACTTTTGATGTTGAAACTAATTGTTGAACATTCATCTTTCTCTAGGTATAAATACATTCCAATGGTGCCTTTATTGATGCTCTCTGGAGATGAAAGATTGATCACAATGGTCATCAGATGACACCTTCCAAAATGAggtgccatttttttttttgtggtggCTGCTGAGGGAAGGACTTTTCATAACAGTGGCGTTCAGTGCCgtttatgatgagggaggaagataaaaaaaattaaaaaatcatgAGCATGTcttctattacagcatgttggatgatgtcattcatattctattcacccagttcaatgtaacatcgatgggtttaggctactacagtaTTCTCAAATGTTCCCTATACCCACCATGACATTGCtacaacttagtttatgtaattTGGTATTGGTGACGCATTCAAAACTGCCTTGCCTGCA

Function

NR:

description
PREDICTED: X-ray radiation resistance-associated protein 1 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475077.2 True 1864 mRNA 0.42 4 45700289 45702447

Neighbor

gene id symbol gene type direction distance location
pold3 pold3 coding downstream 3075 45685255 ~ 45697214 (-)
LOC110534045 psmb6 coding downstream 71269 45615874 ~ 45629020 (-)
LOC110534031 LOC106603108 coding downstream 318386 45327311 ~ 45381903 (-)
LOC110534028 LOC106603112 coding downstream 519126 45165618 ~ 45181163 (-)
LOC110534025 LOC106603111 coding downstream 682843 45011329 ~ 45017446 (-)
wdr73 LOC106603095 coding upstream 5710 45708157 ~ 45710654 (-)
defbl2 NA coding upstream 11166 45713613 ~ 45715664 (-)
LOC110534044 tm45b coding upstream 39373 45741820 ~ 45746587 (-)
LOC110534046 LOC107567170 coding upstream 44643 45747090 ~ 45751405 (-)
LOC110534049 LOC106603092 coding upstream 71383 45773830 ~ 45778106 (-)
G894761 NA non-coding downstream 15177 45684861 ~ 45685112 (-)
G894783 NA non-coding downstream 35249 45664840 ~ 45665040 (-)
G894781 NA non-coding downstream 36896 45663116 ~ 45663393 (-)
G894776 NA non-coding downstream 40652 45659302 ~ 45659637 (-)
G894775 NA non-coding downstream 41142 45658935 ~ 45659147 (-)
G894832 LOC106603091 non-coding upstream 62098 45764545 ~ 45764846 (-)
G894841 LOC106603088 non-coding upstream 91364 45793811 ~ 45794541 (-)
G894844 NA non-coding upstream 101913 45804360 ~ 45804652 (-)
G894864 NA non-coding upstream 125551 45827998 ~ 45828752 (-)
G893541 NA other downstream 931217 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 1391356 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1491025 44199178 ~ 44209264 (-)
G892965 NA other downstream 1989320 43710485 ~ 43710969 (-)
G894917 NA other upstream 214832 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1528357 47203241 ~ 47234608 (-)
G896841 NA other upstream 2285314 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3179280 48881449 ~ 48907973 (-)

Expression


Co-expression Network