LOC110534046 (LOC107567170)


Basic Information

Item Value
gene id LOC110534046
gene name LOC107567170
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45747090 ~ 45751405 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036934580.1
gaaggcactgtatgtttttgttcagtgtatatttgtcTGTGTTCTGATGTAGACAACAAACTATAAAGTTTGAGATATGTGTTGTTGTACAGTGTTGTTGTACAGTTCATTAAAGTGTAGTAGGCCTACATGTTATGTAAATGTTCATGTAAAAAACAAAGCTAGTGTTCATCAGTTGTCTATGAAATTGAGGACAAATTAACGAAAAGAAACTGCCCTCTGAAGGGGCCGAGTGGGCAATTGTCATTGAGAGCCACACTGTGCCACATGATGACCAGCTACATAATTGgttatggagggatgagagaggtgaTTGCGGAATTTCCTCTGTTATTTGCTTTATTCACATGCAATTTGTAAGAGAACTAATGCTACTAATTTGAATCATCACAAATACAGTAAGACTATCATGACAAGGTAATAACAAGTGTTCAGCACATTTTATTAACAGATACGCAACAGGGAAACAGGTGATGTGCTAGCAGAAACACCCTGGGTAATTTATTTTTtagtttatttcacctttattttatcagggaatCATAATGCCGCTGcctatgcatgcctctccctgCACCTCTTCCCTCTGAGGCCCTCACTGTGACACTTCCAGCTTAGGACCAGGCAGCAGCAATAACAAGCAAATGAAACCATTATACATTGGCATGGTTCCATCTCGTGCTTTGGCATTTACGTCTGATCCATGGTATATGGCAATACCTGTATAActgataattttttttaaaaattctgATCATTCTTCTTTAAAGCATTAACATAATACATGATCTACAAACTGTTGTACCAGGCTGAGGTACAGTGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTACAGATATCCGCAAGACAGTGGAACAGCTGAAACTGGAAGTTAACATCGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTGATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCTCTGGTGATACCAGTGTCATCCTCTGAGAACCCTTTTCGGGAGAAGAAATTCTTCTGTGCCATACTCTAATCCCCACAAATTCACTTTATTAAATACAATAACTCTACGTTTTGTGTCATTATTAGCAATAAGTAATTGACAGTTCTCAGGACAAATAATGCTAACACAGTTGAAGAACCCTTGAACATTTTGGTTTTGGTAGGCCTAATCAGTGTGATgattttttgtattttaaaaaGGTGTATATGTATGTGCTTGAATGATTTATCTGGATTGATCTGATTGACTGAAATAGAACGTTCTTTACG
>XM_021618688.2
GCTAATAGGTTAGACTGTTATGGGTTCAAatttaagaccaaaaagctcattttttgttttcaggaaatgccaattttgactttgcagctggcccatctagtggaaactgctcagttctgcctccagggcaagattaattacaataaacatcaacctgcaGCAGAGAAAGCGTAAGTGTTGAAGGACTTTACCTGGCTGTGCTGGTTGGAAGCACTCTACTTGCAGTGAGACGACCAATCAACGCAGGGAAACACCTGCTAATGATGCACTTGGCATTAAACTATGAGGCAGGCACTGCAGCCCCTGCTGTAGCCTGGCAACCCTGCAAGCCCTGCTAGAGATACTGAAAATCCAGACAGTACTTAGAGTTACTGGAAGCTAAATGTAACTTCCTCTTCAGAGACTCCACATCACACTCCATTTTAGACCATCAGGATCCCTAATCACACAATATATGGTATTAGACACTATAACACTCCGTACTACACAAGTATTTAAGTATGCCACAGTGTAGCACAACAACGGTGGTACGAAGCCTCCCCCTTGTAATCTTTCAGGTAAATATTTGTTGTGGGTAGCATGTGGAAAACAACCACTAGGCTTATCTCTCATGACACCTCTCCTGCCTAAGGCTCTTGGTTACATGCAAATCACTTACTTTTTCCACAGAACTGTAGTACagtaatacaacaatacaaaataaatacagtcTTAAACAGAAAATGTAAGAGCAACACAGATTATTTTTTGTTTATAATAAATAATCAGACCCAATAAGCATAACCCAAATTTGCCTGAAAAAATGATTAGGGGATGAAATGACAACCTTTTACAACAAAATTGTACGAGTCTCCTCTAAAGTAAACAGCTAAAATGACAAGTCTGATTGATGACAATCAAATGATAGGCACTGTCAAGAGAGGAAGGTCACACCCTATGTCGTCTGCTTTCGTTGCATTGAGCCCAACATGGGGGAAGAACGAGAGGTAATTACTGTATGAGAGGAGGGAACCTATTCAAGCCCTCCTCCCCATCATACTCACTAATCTCTCTCCATTTGGAACTCTCAAATTGTTTGTAGAGAGATTGCCTTGTTCAACCATTCCACCTCAACTCGGGAGTCCTGGACCTACCAACCTGTCTGTCTTGTTTTTGCGCATTAACATAATACATGATCTACAAACTGTTGTACCAGGCTGAGGTACAGTGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTACAGATATCCGCAAGACAGTGGAACAGCTGAAACTGGAAGTTAACATCGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTGATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCTCTGGTGATACCAGTGTCATCCTCTGAGAACCCTTTTCGGGAGAAGAAATTCTTCTGTGCCATACTCTAATCCCCACAAATTCACTTTATTAAATACA
>TU1018024
TTTGTAGAGAGATTGCCTTGTTCAACCATTCCACCTCAACTCGGGAGTCCTGGACCTACCAACCTGTCTGTCTTGTTTTTGCGGCTGAGGTACAGTGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTACAGATATCCGCAAGACAGTGGAACAGCTGAAACTGGAAGTTAACATCGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTGATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCTCTGGTGATACCAGTGTCATCCTCTGAGAACCCTTTTCGGGAGAAGAAATTCTTCTGTGCCATACTCTAATCCCCACAAATTCA
>TU1018025
CTTCCAGCTTAGGACCAGGCAGCAGCAATAACAAGCAAATGAAACCATTATACATTGGCATGGTTCCATCTCGTGCTTTGGCATTTACGTCTGATCCATGGTATATGGCAATACCTGTATAActgataattttttttaaaaattctgATCATTCTTCTTTAAAGCATTAACATAATACATGATCTACAAACTGTTGTACCAGGCTGAGGTACAGTGAGAGGAAGCAGGATGTCCAATAACATGGCTAAGATTACAGATATCCGCAAGACAGTGGAACAGCTGAAACTGGAAGTTAACATCGAAAGAATGATGGTGTCCAAAGCAGCAGCTGATCTGATGGCCTTCTGTGAGGCTCATGCCAAGGAGGACCCTCTGGTGATACCAGTGTCATCCTCTGAGAACCCTTTTCGGGAGAAGAAATTCTTCTGTGCCATACTCTAATCCCCACAAATTCA

Function

NR:

description
guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-8-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036934580.1 False 1286 mRNA 0.38 2 45747090 45748559
XM_021618688.2 False 1462 mRNA 0.42 3 45747301 45751405
TU1018024 False 336 TUCP 0.47 3 45747315 45750331
TU1018025 True 455 TUCP 0.42 2 45747315 45747953
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Neighbor

gene id symbol gene type direction distance location
LOC110534044 tm45b coding downstream 503 45741820 ~ 45746587 (-)
defbl2 NA coding downstream 31711 45713613 ~ 45715664 (-)
wdr73 LOC106603095 coding downstream 36436 45708157 ~ 45710654 (-)
LOC110534047 NA coding downstream 44643 45700289 ~ 45702447 (-)
pold3 pold3 coding downstream 49876 45685255 ~ 45697214 (-)
LOC110534049 LOC106603092 coding upstream 22425 45773830 ~ 45778106 (-)
LOC110534051 LOC106603090 coding upstream 34496 45785901 ~ 45789814 (-)
LOC110534055 LOC106603086 coding upstream 134496 45885901 ~ 45894223 (-)
gabrr3a LOC106603079 coding upstream 236295 45987700 ~ 46010156 (-)
LOC110534067 LOC106603074 coding upstream 410774 46162179 ~ 46166379 (-)
G894761 NA non-coding downstream 61978 45684861 ~ 45685112 (-)
G894783 NA non-coding downstream 82050 45664840 ~ 45665040 (-)
G894781 NA non-coding downstream 83697 45663116 ~ 45663393 (-)
G894776 NA non-coding downstream 87453 45659302 ~ 45659637 (-)
G894832 LOC106603091 non-coding upstream 13140 45764545 ~ 45764846 (-)
G894841 LOC106603088 non-coding upstream 42406 45793811 ~ 45794541 (-)
G894844 NA non-coding upstream 52955 45804360 ~ 45804652 (-)
G894864 NA non-coding upstream 76593 45827998 ~ 45828752 (-)
G894895 NA non-coding upstream 126866 45878271 ~ 45878761 (-)
LOC110534025 LOC106603111 other downstream 731043 45011329 ~ 45017446 (-)
G893541 NA other downstream 978018 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 1438157 44303605 ~ 44308978 (-)
LOC110533117 stx5 other downstream 1537826 44199178 ~ 44209264 (-)
G892965 NA other downstream 2036121 43710485 ~ 43710969 (-)
G894917 NA other upstream 165874 45917279 ~ 45918339 (-)
LOC110534118 LOC106603020 other upstream 1479399 47203241 ~ 47234608 (-)
G896841 NA other upstream 2236356 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 3130322 48881449 ~ 48907973 (-)
G899409 NA other upstream 4404787 50156192 ~ 50156902 (-)

Expression

LOC110534046(LOC107567170) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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LOC110534046(LOC107567170) Expression in each Bioproject

Bar chart with 18 bars.
LOC110534046(LOC107567170) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network