LOC110534057 (LOC100136559)


Basic Information

Item Value
gene id LOC110534057
gene name LOC100136559
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45903898 ~ 45910889 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618706.2
CTAGACAGAAATTCAAAGGAACTGGAGAAAAATATCCGTGGCTGAGAATGACTAGTAAAACAAACTGCACAATGAATGTGTGAACAGTAGGGTCTAACAGGAAAGATTGTGTCCAGAGTTTTTATTTTAGTCTGAAACGTTTTAACTAACTGGATCTGAATATAGTAAGACAAGAGAAGGAGCTGTAACTACGTGTGGGCGagtttgttgttgctgttagGATGTGTCTGCTCTTTCATTTGTTGTGGTGTTCTCTGGCAAGGTTGGGATTGGAAAGTGCGTCTACTGGTCTAGTGAGTGACAGCATCAGTCTTGGAGAATTTGAATTGAAGCTAGGCAGTAGTTTTCTGACTCCTAACATTTCTTATGCTTAATGCAATATGCTGTGTGCACGTGTTTATGAATAACTTAAGACCACTTCTCAATATTGTGATTTTTCTACACTAATGAAATGGCCCTTTTGCTTGGAAAAGGAATTGGGTCAATTGACAAAAATTTCTTCAGTAATGTTGTAAGAAGACTgtcacatttgcaaaaaaaaatgtgcttaGGAACGGATTTTAACAAATTTAAAGTTTATAGAGCGTGGGGAAGAAAGTTGAGACAACTTGACAATTTTCATTGAGATTTCCCTTTTATAGTTCATGACTTTCCAAATCTCACAGTTTACACAGGGCCACCTGTTTCCAGAGCTTGTTTGTTatattaacgtgtgtgtgtgtatttgggtcCCAGGGACAGGTAGTAATGTGGTGATGTGCTGTAGTTCATTCATTCCTTGAGTTGAGACTGCCTCTAGGGAGCACTGAGAGTATGCGAGGCACCGTACCAGTGAGACAGTGACTCAGTCTAGGCTGAGCTCTTGTGGTGCTTCTCCGTGGTCTGACCTCGGTTCCGCAGCGTGCGCCAGTCACAGAGGAGCTCAACTTGAGATCCTGAAGAGCCTCCTGTGTTTCAGTGAGTATTGTGACAGCAGCAGGAGTAGTGCATTGAAATCAGCTCCCGCAACGGGACTCGGCGAGCTCAAACAGGACGgtaaatccacataattttcatctCTGAAAGCCTGCTGTCTTTAGACGTCGTTCCTCTTTTGAAGTGGGCCATGAGGGCAGAATGTTTGACGCTGGCTGTCTTATTGGCGCTAGAATATGTGTGTCGGAGTGAAGCCATGTCCACCTGTAAGTCACTGGACTTGGAGCTGGTGAAGAGGAAACGTATTGAGGCCATCCGTGGACAGATACTGAGCAAGCTGCGGCTGCCCAAGGAGCCAGAGATTGACCAGGAGGGAGACTCTGAGGAGGTCCCAACCTCCCTGATGTCCATCTACAACAGCACAGTGGAGCTGAGTGAGGAGCAGGGGCAGACGTACATACTGCCCACTCGGGATGCAGAAGAGGAGGCATACTTTGCAAAGGAGGTCCACAAGTTCAACATGAAACAAAGTGAGAACACCAGTAAGTACCAAATGCTCTTCAACGTGTCTGAGATGCGGTCTGTATTGGGGACAGATCGACTGCTCTCTCAAGCTGAGCTCCGTCTCCTCATCAAAAATCGTGGCATGCACGACAGCAGTGAGCAGAGGCTGGAACTCTACAGAGGCACTGGAGATAAGGCACGTTACATGCAGTCCCATTTTGTCTCAAAGGAATGGGCCAATCGCTGGGTCTCCTTTGATGTTACACAGACTCTGAGGGAGTGGCTGAAAGGGGCTGGAGAGGAGCAAGGATTCCAATTGAAGTTGCCTTGTGAATGTGGGAAAGCAATGGAAGAATTCCTCTTTGAAATATCAGGGATGAACAAGCCAAGGGGAGATAAAGAAACTCTCTTCGTGAACATGCCAAAGCCTCACATTTTACTGATGTCACTGCCTGTGGAACGCCACAGCCAGCTTAGCTCTCGGAAGAAACGACAAAGCACTACTGAAGAGATCTGCTTAGACAAATCGGAGAGTTGCTGTGTGCGAAAGCTTTACATTGACTTCCGTAAGGACCTGGGCTGGAAATGGATCCATGAACCCACTGGCTACTTTGCTAACTACTGCATGGGCCCATGCACCTATATATGGAACACAGAGAACAAGTACTCCCAGGTACTGGCTCTGTATAAGCACCACAATCCTGGAGCCTCTGCCCAACCTTGCTGTGTTCCACAGGTCTTGGAGCCCCTACCCATTCTCTACTATGTGGGTAGACAACACAAGGTGGAGCAGTTGTCCAATATGATTGTTAAGTCCTGCAAGTGTAGCTAGAATTACATATATATCAATTTTCTTATTCATCGTATTTCCTTGTACTCATGGAGGGAGTCCTAGCGAAAATCTGGATGTAGTCCAGACATCATTTCCGAATGTTAATAATATTATTTGACATATTTCCCAGCCGAGGATTTCCCTATTCACTGattagtgttttttttatttacatgttttatttacataGTGGTTTATGGAGTTTTTTAATAGTTATTTAGATTTGCCAATGTCCTGGGTGTGTCAATAGACTTGTCTTATTGCCATTGTGTTTCAGTATTTACAGTGTATTcacaaagtattctgaccccttctctttttccacatgttgttacgttacagccttattctgaaatggattaaattaaataaaaatcctcatcaat

Function

NR:

description
transforming growth factor beta-1-like

GO:

id name namespace
GO:0051781 positive regulation of cell division biological_process
GO:0016049 cell growth biological_process
GO:0005615 extracellular space cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618706.2 True 2637 mRNA 0.44 7 45903898 45910889

Neighbor

gene id symbol gene type direction distance location
LOC110534056 LOC106603182 coding upstream 1958 45898515 ~ 45901940 (+)
LOC110533121 ryr1 coding upstream 17956 45813174 ~ 45885942 (+)
LOC110534054 LOC106603087 coding upstream 90878 45806685 ~ 45813020 (+)
LOC110534052 LOC106603088 coding upstream 103520 45792208 ~ 45800378 (+)
LOC110534050 snaa coding upstream 121310 45778283 ~ 45782588 (+)
LOC110534059 LOC106603082 coding downstream 17166 45928055 ~ 45948321 (+)
LOC110533122 LOC106603081 coding downstream 48603 45959492 ~ 45973263 (+)
LOC118966786 LOC106603081 coding downstream 62477 45973366 ~ 45974174 (+)
LOC110533123 LOC106603081 coding downstream 66470 45977359 ~ 45979901 (+)
LOC110533124 LOC106603081 coding downstream 68867 45979756 ~ 45986099 (+)
G894086 NA non-coding upstream 27707 45875210 ~ 45876191 (+)
G894084 NA non-coding upstream 31111 45872700 ~ 45872787 (+)
G894074 NA non-coding upstream 99777 45800924 ~ 45804121 (+)
G894163 NA non-coding downstream 76858 45987747 ~ 45988262 (+)
G894164 LOC106603079 non-coding downstream 77377 45988266 ~ 45989320 (+)
G894172 NA non-coding downstream 88237 45999126 ~ 45999454 (+)
LOC110534062 NA non-coding downstream 119256 46030145 ~ 46041649 (+)
G894197 NA non-coding downstream 192521 46103410 ~ 46104074 (+)
LOC110534042 LOC106603097 other upstream 260342 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 311589 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 893049 45008834 ~ 45010849 (+)
G892191 NA other upstream 1244407 44655558 ~ 44659491 (+)
G894204 LOC100136012 other downstream 205396 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 716403 46627292 ~ 46700540 (+)
G895515 NA other downstream 1129625 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1231155 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 1292036 47202925 ~ 47204842 (+)

Expression


Co-expression Network