LOC110534059 (LOC106603082)


Basic Information

Item Value
gene id LOC110534059
gene name LOC106603082
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 45928055 ~ 45948321 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618707.2
aattatcataattttcatagtattattccaacctcagtgtgaaaatatatatatagaaaacgtttttgactgcactgggcctttaatctcaataaatagtttttaaaaaaagTTACTTTGGGAACAGGTCTTTCTCTGCCCAACTCACAGGAAGCCTACTGTAGACCCAGTCTGAACAAAGCACGAGGTAGACTAGCCACAAAGTCATCGGACCATCCCCCTGCGTTGTAGAAAACCCTCTCACTCAAACAGCAGCAGCGGTACTGGCAGTACGATCAAGGCCCTTCCTTCAGTCTCCACAGGCAAACTCCGTTTTCACACCGGCTGCCTACTCCAGGCATGGCTGACGGCTGTACCCAGTCATGGCACTGCGACATTACACCCTCGACTTCAACCTCTCAGCGCCAGCTGACTGTCCTTCGACTGTGCGTGGGCTGCAGTCTATATTTCAAGAGCAGGAAATGACAGAGACTGTCCATGACACTGAGGGACATGGATACCTTGCTACCTTCATTGGCAAGAATGGCAGGTTGGTTATTCTGCGTGTGCACTCCCAAGGTCTGGTTACCGTTGATCTGCAGTGTTGTGAAGGAGATAACATTGCACAAGTAGATAATCTTTTGAATGCACTGGAAAAGAAGCTAAAAAGTATCCTACATGGAAACATTAGGGGGGTCAAGAGGCTCCCAGCTCTGACACGAGGTGCAGCTGTTGATCGATACTGGCCCACAGCCGACGGCAGACTGGTGGAGTATGACATTGATCGGGTTGTATACGATGAGGACTCTGCATACCAGAACATAAAGATCTTGCACTCACAGCAGTTTGGCAATATCCTGATCCTCAATGGGGATGTTAATCTGGCAGAGAGTGACCTGCCCTACACGCAGGCCATCATGGGCAGAGGGAAAGAGAACTATACAGGAAAGGAGGTGCTGATCTTAGGAGGCGGTGATGGAGGAATCCTCGCTGAGGCCGTCAAACTCAAGCCAAAGATGATCACCATGGTGGAGATCGACCAAATGGTGATTGATGGGTGCAGGACGCACATGAGGAAGGCTTGTGGAAGTGTTCTGGACAACCTGAAGGGAGACTGTTACCAGGTGTTGGTGGAGGACTGTGTTCCGGTTCTGAAAAAGTATGTGGAGGAAGGGAAGACGTTTGATTACGTCATCAATGACCTCACAGCAGTTCCTATCTCCACAGCGCCAGAGGAGGACTCTACATGGGAGTTCCTACAGCTTATCTTGGATCTTTCAATCAAAGTACTGCGTCCTACTGGGAAGTACTTCACACAGGGAAACTGTGCAAATCTGACTGAGGCACTGGCTCTCTATGAGGAACAGCTGGGAAGGCTCTCATGTCCTGTGGACTTTTCCAAGGAGGTGGTTTGTGTGCCCTCTTATATGGAACTGTGGGTTTTCTACACCGTTTGGAAAAAGTAAAGAGCTCCCTCTCCCCTTCAAGCCCTGCCTGCCGGAATGTGAAAACTGTCCCCCCACCCATGATCTGCTATCGCACTGAGGGGcgatatgacccccccccccccccccaccccccccaaaaaaacaaaatCTCTACTCACACTATTTTTTTTATCCTTCTAAGTCCAACTCTCAAACTCTTTTTAGATGTTGGTTTTATAATTTTATGTCTAAACTTGCAAGAGATTGTATATCTGTTAATTGGATATTTTGAGTTGGGCTGTTTTTGCATATGTGCTCCAGGGAGAGCTGTGGGGCTGCTACCACTGGATACACTGAAACCTACTGTAGAGGATGACTCAGCATTTCTATAGCTGGTCCCAGACCTGTCTGTGCTTTAGACTTCTCtgactatagcctggtcccagacctgtctGGGCTTTAGACTTCTCtgactatagcctggtcccagacctgtctGGGCTTTAGACTTCTCtgactatagcctggtcccagacctgtctGGGCTTTAGACTTCTCtgactatagcctggtcccagacctgtctGGGCTTTAGACTTCTCTGACTATTGTTGTCATGCCATACATGTTACATGTCTTATACATGTTTGAAAGGGCAACAATACTCCTGAGGAGTTGCCTGAAGCTcatagagatctgggaccaggctatagtcaGAGAAGCCTAAAGCCCagacaggtctgggaccaggcaagtATTGAAACACTTTATGCACCTGTACTTTTCACATTTGGGTTATAAAAGCAGCACCAACATACAATAGCTTTTGGGTTCTGATTGTGTGATAGAATATGTGCTCCCCATAGTTTCAACTGAATGTCTGTTTGTGTGATTGTTTTTCCTCTTCTGTTGTAACTGTGGCTTGAGTGTGATTTTGATTACAGGTGCTTGTCAAGATGTTGAAAAGGCAGTGTGACCCTGCCCATTGAGGCTGAAGTGTCCGAACGTGTTCTTAAAAGGGAAAAGGGTCCTCCTTTGTGGCGGTTTCTTGCTTGTAATGATTTATTTTTACATACTTCGTTTTAAATTGGTCTAAAATTCTGTTTGGTGCATGTGCTGGAAAAGGAAAGTTTTATTGAATGTAGCTTACCATATATACACAGTGCACATTCATGCCTTTTGATGATTATTGTGgtgctttgttacatttatttattgGATATTATTTCACCAAATGCTGTTTTATCCCActggaaaaatgtatgttgtTCAGCAGTGACTACCTGCTATTAAAACGAGTTGGAGAATAAAA

Function

NR:

description
spermine synthase-like

GO:

id name namespace
GO:0006597 spermine biosynthetic process biological_process
GO:0016768 spermine synthase activity molecular_function

KEGG:

id description
K00802 SMS; spermine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618707.2 True 2718 mRNA 0.46 11 45928055 45948321

Neighbor

gene id symbol gene type direction distance location
LOC110534057 LOC100136559 coding upstream 17166 45903898 ~ 45910889 (+)
LOC110534056 LOC106603182 coding upstream 26115 45898515 ~ 45901940 (+)
LOC110533121 ryr1 coding upstream 42113 45813174 ~ 45885942 (+)
LOC110534054 LOC106603087 coding upstream 115035 45806685 ~ 45813020 (+)
LOC110534052 LOC106603088 coding upstream 127677 45792208 ~ 45800378 (+)
LOC110533122 LOC106603081 coding downstream 11171 45959492 ~ 45973263 (+)
LOC118966786 LOC106603081 coding downstream 25045 45973366 ~ 45974174 (+)
LOC110533123 LOC106603081 coding downstream 29038 45977359 ~ 45979901 (+)
LOC110533124 LOC106603081 coding downstream 31435 45979756 ~ 45986099 (+)
LOC110534061 LOC106603080 coding downstream 59884 46008205 ~ 46021746 (+)
G894086 NA non-coding upstream 51864 45875210 ~ 45876191 (+)
G894084 NA non-coding upstream 55268 45872700 ~ 45872787 (+)
G894074 NA non-coding upstream 123934 45800924 ~ 45804121 (+)
G894163 NA non-coding downstream 39426 45987747 ~ 45988262 (+)
G894164 LOC106603079 non-coding downstream 39945 45988266 ~ 45989320 (+)
G894172 NA non-coding downstream 50805 45999126 ~ 45999454 (+)
LOC110534062 NA non-coding downstream 81824 46030145 ~ 46041649 (+)
G894197 NA non-coding downstream 155089 46103410 ~ 46104074 (+)
LOC110534042 LOC106603097 other upstream 284499 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 335746 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 917206 45008834 ~ 45010849 (+)
G892191 NA other upstream 1268564 44655558 ~ 44659491 (+)
G894204 LOC100136012 other downstream 167964 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 678971 46627292 ~ 46700540 (+)
G895515 NA other downstream 1092193 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1193723 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 1254604 47202925 ~ 47204842 (+)

Expression


Co-expression Network