LOC110534061 (LOC106603080)


Basic Information

Item Value
gene id LOC110534061
gene name LOC106603080
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46008205 ~ 46021746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990469.1
ttcctgttaCACACCCTCTTTTCTCACTGTGAGAGGAGCTAGTTTCTCTGACAGGGAAACTGCTTTTCTGCTCTGACACAAGTGGTTCCAGGTGGGCCCTTTCGTATGTCTGTGGCAGTGAGTTTCAGACTCATTGGCTCTCATTTGTGTTTACAAGGATATTTTCCATCTGGATCCTTTAAAGTGACAGCAAAGCAAAGTGACAGGCAGATGCCCATTTGACATGCCTGTTCTCAGAAGACTGTGTGCTACCCTGCAGCTTCAAACCCAGCGGAAATGAGATCATCAGCTGGTACCGCCAGGAGTTACTCCTCCTCAGCCACTCCCATCAGGGTGGAGACCAGTCGGACCAGACTCCCAAGGACCACCGTACCAGGATGTACCTGCTTCAGGACCAGCTCTCCCGGGGCAACGCCTCGCTCCACCTCAGCCAGTGTGGCATCAAGGACCGAGGTCGCTACAGGTGTCTGGTCAACAGCACTCTGGGACAACAGGAGTCCTTTATCATCATGAAAGTGGAGGCTCCCATCAAGATGGTTACTATGGAGATAAGTAAGAACACAGAGATTCAGTGCCTGTCTAAGGATATCTTCCCTGCTCCCCGTGTGCAATGGTCCACTCTGCCACCTAAAGCCAACCTGAGATCCACCACACATATGGCACCCAACACTGAGGGCCTCTACTCTGTTCAGAGCAAACTGAGAATGTTTGGAAATACCCCCACTTACGTCTGCACCGTTAATTCCACATATGGATCACAGTCATGGAAGAGCTCACTACAAAAAGGAGAGTTGATTGGAGAGGCAGGGCGAGAGCTGTCCATCCCTTGCATGGCTCCACAGAACTTCCAGAACTTTTTCCTCACCTGGACCTTCACTAGAACCAATGATAACTCCAAGGTCATCCTTAGCTATGTCAGCCAAACCAGACGGACCTCCAACCTTTGGGAGGGCCGGGTTGAACTGGAGCAGGACCGAGTTTTGATGGGAGATGGATCCCTCCTTCTTCACAACCCAGAGAGTCAGGAACACACTGGAACCTACACCTGTACATTCTCAGGCTTCCAGAGCAGACACATGGTTCAAACCCAGGTCGCCATCAGGTCAACATCACGGCGGTCGTTGACAGACAATATGCCAAATGCTGAAGACCAGGTTGGGCGTACAGGGGAAAGTCACTCCACGATGTGGGTTATTGCTGTAATAGTTGCAGTGGTTGCACTAGTAACAACAGCTATACTACTGTATAGAAAACAAAGAGCCAACCAAGGGAAGGCTGATAGGACCACTCTGGAGGACACAGAGATGCAGCCAATGAAAACTATTAAAACATCTGATGATTTGCCAATGGATAACTGCCAGCTGACAGCAGGACAAAACAACGGCCATACATAGCTCTGACTGACAAGACGTACCAGATGACAGTCATACTGTTCCTAATCACAGACCTGACATCATCAATCAACCATGCATTTGTAGCTTGACTGACAGTTAGAAAATGTGCCCATGGACAACAACCCACATGTTTTGCTCAAGGGGGGAAATTATATCATTGGAGAGTACTGTTCTACAGTGGAGCACATCTGTGTTCTAAACAACTGAATAACTGTACCGTCTTCATAATTTACATTAAAGTTTTGAATTAAGTATT
>XM_036990468.1
CGCTCcctccttctcgctctcccttCCTCTTACAGTCCCTCTCTTCTCACTGTGAGAGGAGCTAGTTTCTCTGACAGGGAAACTGCTTTTCTGCTCTGACACAAGTGGTTCCAGGTGGGCCCTTTCGTATGTCTGTGGCAGTGAGTTTCAGACTCATTGGCTCTCATTTGTGTTTACAAGGATATTTTCCATCTGGATCCTTTAACCTTTAAAGTGACAGCAAGTGATTTTGATCTACACCATCCCAGAGGCTGAAATGTGAGATATAAGAGAGACCAAGACACTAATTGTGATTCAGAGCTCCTAATTGCTTTAAGATTGCTACTGATTGGAATCAGGACGGGAGTCAACAGCAACCATACTTGTGACTTTGTGAATGAATGAGAATGGTAAAGGCACTTGCTCAAGCTTTTTTGAGGTTGCTGTGGATTCTCACCTTGGCAAAGTGTAAGATCCCAGATGCCCATTTGACATGCCTGTTCTCAGAAGACTGTGTGCTACCCTGCAGCTTCAAACCCAGCGGAAATGAGATCATCAGCTGGTACCGCCAGGAGTTACTCCTCCTCAGCCACTCCCATCAGGGTGGAGACCAGTCGGACCAGACTCCCAAGGACCACCGTACCAGGATGTACCTGCTTCAGGACCAGCTCTCCCGGGGCAACGCCTCGCTCCACCTCAGCCAGTGTGGCATCAAGGACCGAGGTCGCTACAGGTGTCTGGTCAACAGCACTCTGGGACAACAGGAGTCCTTTATCATCATGAAAGTGGAGGCTCCCATCAAGATGGTTACTATGGAGATAAGTAAGAACACAGAGATTCAGTGCCTGTCTAAGGATATCTTCCCTGCTCCCCGTGTGCAATGGTCCACTCTGCCACCTAAAGCCAACCTGAGATCCACCACACATATGGCACCCAACACTGAGGGCCTCTACTCTGTTCAGAGCAAACTGAGAATGTTTGGAAATACCCCCACTTACGTCTGCACCGTTAATTCCACATATGGATCACAGTCATGGAAGAGCTCACTACAAAAAGGAGAGTTGATTGGAGAGGCAGGGCGAGAGCTGTCCATCCCTTGCATGGCTCCACAGAACTTCCAGAACTTTTTCCTCACCTGGACCTTCACTAGAACCAATGATAACTCCAAGGTCATCCTTAGCTATGTCAGCCAAACCAGACGGACCTCCAACCTTTGGGAGGGCCGGGTTGAACTGGAGCAGGACCGAGTTTTGATGGGAGATGGATCCCTCCTTCTTCACAACCCAGAGAGTCAGGAACACACTGGAACCTACACCTGTACATTCTCAGGCTTCCAGAGCAGACACATGGTTCAAACCCAGGTCGCCATCAGGTCAACATCACGGCGGTCGTTGACAGACAATATGCCAAATGCTGAAGACCAGGTTGGGCGTACAGGGGAAAGTCACTCCACGATGTGGGTTATTGCTGTAATAGTTGCAGTGGTTGCACTAGTAACAACAGCTATACTACTGTATAGAAAACAAAGAGCCAACCAAGGGAAGGCTGATAGGACCACTCTGGAGGACACAGAGATGCAGCCAATGAAAACTATTAAAACATCTGATGATTTGCCAATGGATAACTGCCAGCTGACAGCAGGACAAAACAACGGCCATACATAGCTCTGACTGACAAGACTGGAGCACATCTGTGTTCTAAACAACTGAATAACTGTACCGTCTTCATAATTTACATTAAAGTTTTGAATTAAGTATTCATTGTAGCAGTCATCTGTGAGTGTC
>XM_021618709.2
GCTCcctccttctcgctctcccttCCTCTTACAGTCCCTCTCTTCTCACTGTGAGAGGAGCTAGTTTCTCTGACAGGGAAACTGCTTTTCTGCTCTGACACAAGTGGTTCCAGGTGGGCCCTTTCGTATGTCTGTGGCAGTGAGTTTCAGACTCATTGGCTCTCATTTGTGTTTACAAGGATATTTTCCATCTGGATCCTTTAACCTTTAAAGTGACAGCAAGTGATTTTGATCTACACCATCCCAGAGGCTGAAATGTGAGATATAAGAGAGACCAAGACACTAATTGTGATTCAGAGCTCCTAATTGCTTTAAGATTGCTACTGATTGGAATCAGGACGGGAGTCAACAGCAACCATACTTGTGACTTTGTGAATGAATGAGAATGGTAAAGGCACTTGCTCAAGCTTTTTTGAGGTTGCTGTGGATTCTCACCTTGGCAAAGTGTAAGATCCCAGATGCCCATTTGACATGCCTGTTCTCAGAAGACTGTGTGCTACCCTGCAGCTTCAAACCCAGCGGAAATGAGATCATCAGCTGGTACCGCCAGGAGTTACTCCTCCTCAGCCACTCCCATCAGGGTGGAGACCAGTCGGACCAGACTCCCAAGGACCACCGTACCAGGATGTACCTGCTTCAGGACCAGCTCTCCCGGGGCAACGCCTCGCTCCACCTCAGCCAGTGTGGCATCAAGGACCGAGGTCGCTACAGGTGTCTGGTCAACAGCACTCTGGGACAACAGGAGTCCTTTATCATCATGAAAGTGGAGGCTCCCATCAAGATGGTTACTATGGAGATAAGTAAGAACACAGAGATTCAGTGCCTGTCTAAGGATATCTTCCCTGCTCCCCGTGTGCAATGGTCCACTCTGCCACCTAAAGCCAACCTGAGATCCACCACACATATGGCACCCAACACTGAGGGCCTCTACTCTGTTCAGAGCAAACTGAGAATGTTTGGAAATACCCCCACTTACGTCTGCACCGTTAATTCCACATATGGATCACAGTCATGGAAGAGCTCACTACAAAAAGGAGAGTTGATTGGAGAGGCAGGGCGAGAGCTGTCCATCCCTTGCATGGCTCCACAGAACTTCCAGAACTTTTTCCTCACCTGGACCTTCACTAGAACCAATGATAACTCCAAGGTCATCCTTAGCTATGTCAGCCAAACCAGACGGACCTCCAACCTTTGGGAGGGCCGGGTTGAACTGGAGCAGGACCGAGTTTTGATGGGAGATGGATCCCTCCTTCTTCACAACCCAGAGAGTCAGGAACACACTGGAACCTACACCTGTACATTCTCAGGCTTCCAGAGCAGACACATGGTTCAAACCCAGGTCGCCATCAGGTCAACATCACGGCGGTCGTTGACAGACAATATGCCAAATGCTGAAGACCAGGTTGGGCGTACAGGGGAAAGTCACTCCACGATGTGGGTTATTGCTGTAATAGTTGCAGTGGTTGCACTAGTAACAACAGCTATACTACTGTATAGAAAACAAAGAGCCAACCAAGGGAAGGCTGATAGGACCACTCTGGAGGACACAGAGATGCAGCCAATGAAAACTATTAAAACATCTGATGATTTGCCAATGGATAACTGCCAGCTGACAGCAGGACAAAACAACGGCCATACATAGCTCTGACTGACAAGACGTACCAGATGACAGTCATACTGTTCCTAATCACAGACCTGACATCATCAATCAACCATGCATTTGTAGCTTGACTGACAGTTAGAAAATGTGCCCATGGACAACAACCCACATGTTTTGCTCAAGGGGGGAAATTATATCATTGGAGAGTACTGTTCTACAGTGGAGCACATCTGTGTTCTAAACAACTGAATAACTGTACCGTCTTCATAATTTACATTAAAGTTTTGAATTAAGTATT

Function

NR:

description
uncharacterized protein LOC110534061

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990469.1 False 1650 mRNA 0.48 7 46008205 46021720
XM_036990468.1 False 1763 mRNA 0.48 8 46008522 46021746
XM_021618709.2 True 1898 mRNA 0.48 7 46008523 46021720

Neighbor

gene id symbol gene type direction distance location
LOC110533124 LOC106603081 coding upstream 22106 45979756 ~ 45986099 (+)
LOC110533123 LOC106603081 coding upstream 28304 45977359 ~ 45979901 (+)
LOC118966786 LOC106603081 coding upstream 34031 45973366 ~ 45974174 (+)
LOC110533122 LOC106603081 coding upstream 34942 45959492 ~ 45973263 (+)
LOC110534059 LOC106603082 coding upstream 59884 45928055 ~ 45948321 (+)
LOC110533125 NA coding downstream 4299 46026045 ~ 46026891 (+)
LOC110534062 NA coding downstream 8564 46030145 ~ 46041649 (+)
phldb2a LOC106603077 coding downstream 46659 46068405 ~ 46089813 (+)
LOC110534064 LOC106603075 coding downstream 83575 46105321 ~ 46127336 (+)
LOC110534065 LOC106603181 coding downstream 121944 46143690 ~ 46151537 (+)
G894172 NA non-coding upstream 8751 45999126 ~ 45999454 (+)
G894164 LOC106603079 non-coding upstream 18885 45988266 ~ 45989320 (+)
G894163 NA non-coding upstream 19943 45987747 ~ 45988262 (+)
LOC110534056 LOC106603182 non-coding upstream 108373 45898515 ~ 45901940 (+)
G894086 NA non-coding upstream 132014 45875210 ~ 45876191 (+)
G894197 NA non-coding downstream 81664 46103410 ~ 46104074 (+)
G894198 NA non-coding downstream 82609 46104355 ~ 46104625 (+)
G894133 NA non-coding downstream 109195 46130941 ~ 46133731 (+)
G894212 NA non-coding downstream 117432 46139178 ~ 46139453 (+)
LOC110534042 LOC106603097 other upstream 364649 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 415896 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 997356 45008834 ~ 45010849 (+)
G892191 NA other upstream 1348714 44655558 ~ 44659491 (+)
G894204 LOC100136012 other downstream 94539 46116285 ~ 46117943 (+)
G894437 LOC106603023 other downstream 605546 46627292 ~ 46700540 (+)
G895515 NA other downstream 1018768 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 1120298 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 1181179 47202925 ~ 47204842 (+)

Expression


Co-expression Network