LOC110534066 (pdk3)


Basic Information

Item Value
gene id LOC110534066
gene name pdk3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46151680 ~ 46162320 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618714.2
TGTCACGTGGGTCGgaattagacacacacacaccgtacttCCGAATGCATCAATGTAACATGGGGGGCTACTGTCAAAGGAGGGGATATCAGCATGTAACTTGTATTGAGTGTTTATATTTGTCGATGCAAGTAGACAGGGGGTTGTTTGGAAATCGTTCTTATGCCATCAACTGTACTCATATTTATGTGTGTTGACGGTTAGAAAGTGATTACTTGAAGCAATCATGAGGCTGTTCAACTTTCTACTAAAAGATGTAACATCGAAAATAGAATATTATTCGAGGTTCTCTCCCTCGCCGATGTCTATCAAGCAGTTTCTGGACTTTGGCAGGGAGAATGCATGTGAGAAGACCTCCTACGTGTTCCTGCGCAAGGAGCTTGCGGTGCGGGGGGCCAATACCATGAAGGAAATCAACCTGTTACCCAGTGACCTGCGTATCCAGCCGTCCGTCAAACTGGTGCACAGTTGGTACATTCAGAGCTTTGAAGAGCTGCTGGATTATGAACACAGGGGTCCGGAGGACAGCCGCACCTTAAGCGACTTTCTAGACACCCTGGTCAAAATCCGTAATAGGCACAATGAAGTGGTCCCCACCATGGCCCAGGGTGTCATAGAGTACAAGCAGAAGTTTGGCTTTGATCCTTTTATCAGCAGCAACGTTCAGTACTTCCTGGATCGCTTTTACACCAACAGGATATCCTTCCGCATGCTCATCAACCAGCACACACTCCTTTTTGGTGATGACAGAACCACCTCCCATCCCAAACACATAGGAAGTATTGATCCTACCTGCAATGTCCCTGAGGTGGTGAAAGATGCTTATGAGACCGCTAAGATGCTCTGTGAGCAGTACTACTTGGTCGCCCCTGAGCTGAACATAGAAGAGTACAATTCCAAGGCCCCTTCGAAGGCTATCCAGGTGGTTTATGTTCCATCTCACCTGTTCCATATGCTGTTTGAGCTCTTCAAGAATTCGATGCGGGCCACAGTGGAGCTCCATGAGAACAGTAGTGCTGGACTCCCCCAAGTGAAGGCCATGGTGACGCTTGGAAAGGAAGACCTCTCTATCAAGaTCAGTGACAGAGGAGGGGGCGTGCCCCTCAGGAAGATTGACAAGCTCTTTAGCTACATGTACTCCACTGCGCCCACCCCGAGCCTTGAACCAGGAAATGGAACTCAGGCTGCACCACTGGCTGGCTTTGGGTATGGTCTCCCCATTTCTCGACTCTATGCACGTTACTTCCAAGGAGACCTGAACCTCTACTCCATGGAGGGGGTGGGTACAGACGCTGTCATCTATCTGAAGGCTCTGTCCAGCGAGTCCTTTGAGCGTCTCCCCGTCTTCAACAAGTCAGCGTGGAGACATTACCAGACTGGTCCTGAGGCAGATGACTGGAGCAACCCTAGCAGTGACCCACGTGATGCAGCCAAGTACAAGATCAAATAACTCTTGAGTCTGGCCCTCAGGCAATGCTGCATGCCACAGGTCATGTCTAGTCACATGACAGACACATTAAGTTACCTTCCACTCCTACAGTGAAGCACAGAACTAAAGCACAGCACTGACTGAAATATTGTCTCAACGGGTAACATATTTATTTCCATCAGGCAGGTAAAGCCAAAACACAGTTTTAATCCTTTATTTCCTTGTTTGCTGGTATGTTATTATTGACCACAGTTTCCATGGTAGCAGATTGCGATTGGTGACCTCCTCCGTCAGATAGCGTGACTCTGTTATTAGGTTTAATAAGTGTCACGTGGGAGTGACACCACgggaaataatgtactttttcccTTAATGCAAATAATGGCCTAGCGTAACAGTATACTGTGTGAAACAAGAATATTAGTTTATCATTTTATGGCAGTGTGCAATGGTTTTCAATAGATTAACCCAGTGGGCATTTTCCCAGCTTAGAAAAAGGGATTAGGTtagtatgtatgtgtttgtgacaTGAAATGTTACTCGGATGCATGATGATGCAATTTGGTACTGTAAGTTATTAAGAGATTATAATAACTTTGGATGCTTATGAAATTGCATGGAACAATATCTAAATCATTTGAGACATATCTTACTTTAGATTACTTAATTGCATGACAAAAAAATACTCTCAGAAATGATTGTTTTGTATTTAATATTAAAAAGAAAATGTCcgaaatgttttgtttttactGCATATCATAGACAACTGAATGCAAATTTGAGCGTTTCACTAAGTATTTCTAAAGAAAAAATAAAGCCTGGTTGATGCAAAATGGA
>XM_021618715.2
TGTCACGTGGGTCGgaattagacacacacacaccgtacttCCGAATGCATCAATGTAACATGGGGGGCTACTGTCAAAGGAGGGGATATCAGCATGTAACTTGTATTGAGTGTTTATATTTGTCGATGCAAGTAGACAGGGGGTTGTTTGGAAATCGTTCTTATGCCATCAACTGTACTCATATTTATGTGTGTTGACGGTTAGAAAGTGATTACTTGAAGCAATCATGAGGCTGTTCAACTTTCTACTAAAAGATGTAACATCGAAAATAGAATATTATTCGAGGTTCTCTCCCTCGCCGATGTCTATCAAGCAGTTTCTGGACTTTGGCAGGGAGAATGCATGTGAGAAGACCTCCTACGTGTTCCTGCGCAAGGAGCTTGCGGTGCGGGGGGCCAATACCATGAAGGAAATCAACCTGTTACCCAGTGACCTGCGTATCCAGCCGTCCGTCAAACTGGTGCACAGTTGGTACATTCAGAGCTTTGAAGAGCTGCTGGATTATGAACACAGGGGTCCGGAGGACAGCCGCACCTTAAGCGACTTTCTAGACACCCTGGTCAAAATCCGTAATAGGCACAATGAAGTGGTCCCCACCATGGCCCAGGGTGTCATAGAGTACAAGCAGAAGTTTGGCTTTGATCCTTTTATCAGCAGCAACGTTCAGTACTTCCTGGATCGCTTTTACACCAACAGGATATCCTTCCGCATGCTCATCAACCAGCACACACTCCTTTTTGGTGATGACAGAACCACCTCCCATCCCAAACACATAGGAAGTATTGATCCTACCTGCAATGTCCCTGAGGTGGTGAAAGATGCTTATGAGACCGCTAAGATGCTCTGTGAGCAGTACTACTTGGTCGCCCCTGAGCTGAACATAGAAGAGTACAATTCCAAGGCCCCTTCGAAGGCTATCCAGGTGGTTTATGTTCCATCTCACCTGTTCCATATGCTGTTTGAGCTCTTCAAGaTCAGTGACAGAGGAGGGGGCGTGCCCCTCAGGAAGATTGACAAGCTCTTTAGCTACATGTACTCCACTGCGCCCACCCCGAGCCTTGAACCAGGAAATGGAACTCAGGCTGCACCACTGGCTGGCTTTGGGTATGGTCTCCCCATTTCTCGACTCTATGCACGTTACTTCCAAGGAGACCTGAACCTCTACTCCATGGAGGGGGTGGGTACAGACGCTGTCATCTATCTGAAGGCTCTGTCCAGCGAGTCCTTTGAGCGTCTCCCCGTCTTCAACAAGTCAGCGTGGAGACATTACCAGACTGGTCCTGAGGCAGATGACTGGAGCAACCCTAGCAGTGACCCACGTGATGCAGCCAAGTACAAGATCAAATAACTCTTGAGTCTGGCCCTCAGGCAATGCTGCATGCCACAGGTCATGTCTAGTCACATGACAGACACATTAAGTTACCTTCCACTCCTACAGTGAAGCACAGAACTAAAGCACAGCACTGACTGAAATATTGTCTCAACGGGTAACATATTTATTTCCATCAGGCAGGTAAAGCCAAAACACAGTTTTAATCCTTTATTTCCTTGTTTGCTGGTATGTTATTATTGACCACAGTTTCCATGGTAGCAGATTGCGATTGGTGACCTCCTCCGTCAGATAGCGTGACTCTGTTATTAGGTTTAATAAGTGTCACGTGGGAGTGACACCACgggaaataatgtactttttcccTTAATGCAAATAATGGCCTAGCGTAACAGTATACTGTGTGAAACAAGAATATTAGTTTATCATTTTATGGCAGTGTGCAATGGTTTTCAATAGATTAACCCAGTGGGCATTTTCCCAGCTTAGAAAAAGGGATTAGGTtagtatgtatgtgtttgtgacaTGAAATGTTACTCGGATGCATGATGATGCAATTTGGTACTGTAAGTTATTAAGAGATTATAATAACTTTGGATGCTTATGAAATTGCATGGAACAATATCTAAATCATTTGAGACATATCTTACTTTAGATTACTTAATTGCATGACAAAAAAATACTCTCAGAAATGATTGTTTTGTATTTAATATTAAAAAGAAAATGTCcgaaatgttttgtttttactGCATATCATAGACAACTGAATGCAAATTTGAGCGTTTCACTAAGTATTTCTAAAGAAAAAATAAAGCCTGGTTGATGCAAAATGGA

Function

symbol description
pdk3 Enables ATP binding activity; protein serine/threonine kinase activity; and pyruvate dehydrogenase (acetyl-transferring) kinase activity. Involved in several processes, including hypoxia-inducible factor-1alpha signaling pathway; peroxisome proliferator activated receptor signaling pathway; and regulation of acetyl-CoA biosynthetic process from pyruvate. Located in mitochondrion and nucleolus. Implicated in Charcot-Marie-Tooth disease X-linked dominant 6.

NR:

description
pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 3, mitochondrial-like isoform X2

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0016301 kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618714.2 False 2266 mRNA 0.44 11 46151680 46162320
XM_021618715.2 True 2164 mRNA 0.44 10 46151680 46162320

Neighbor

gene id symbol gene type direction distance location
LOC110534065 LOC106603181 coding upstream 143 46143690 ~ 46151537 (+)
LOC110534064 LOC106603075 coding upstream 24344 46105321 ~ 46127336 (+)
phldb2a LOC106603077 coding upstream 61867 46068405 ~ 46089813 (+)
LOC110534062 NA coding upstream 110031 46030145 ~ 46041649 (+)
LOC110533125 NA coding upstream 124789 46026045 ~ 46026891 (+)
LOC110534070 ccd82 coding downstream 56052 46218372 ~ 46221645 (+)
trnac-gca NA coding downstream 67644 46229964 ~ 46230035 (+)
lipia LOC106603069 coding downstream 101274 46263594 ~ 46278516 (+)
prdx4 prdx4 coding downstream 212377 46374697 ~ 46382856 (+)
sat1a.2 sat1 coding downstream 230592 46392912 ~ 46395196 (+)
G894215 NA non-coding upstream 3551 46147875 ~ 46148129 (+)
G894212 NA non-coding upstream 12227 46139178 ~ 46139453 (+)
G894133 NA non-coding upstream 17949 46130941 ~ 46133731 (+)
G894198 NA non-coding upstream 47055 46104355 ~ 46104625 (+)
G894197 NA non-coding upstream 47606 46103410 ~ 46104074 (+)
G894228 NA non-coding downstream 18144 46180464 ~ 46180736 (+)
G894248 NA non-coding downstream 47141 46209461 ~ 46209884 (+)
G894321 LOC106603070 non-coding downstream 117302 46279622 ~ 46280157 (+)
G894289 NA non-coding downstream 141341 46303661 ~ 46304186 (+)
G894294 NA non-coding downstream 144282 46306602 ~ 46313915 (+)
G894204 LOC100136012 other upstream 33737 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 249869 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 508124 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 559371 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 1140831 45008834 ~ 45010849 (+)
G894437 LOC106603023 other downstream 464972 46627292 ~ 46700540 (+)
G895515 NA other downstream 878194 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 979724 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 1040605 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 1054087 47216407 ~ 47217071 (+)

Expression


Co-expression Network