trnac-gca


Basic Information

Item Value
gene id trnac-gca
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46229964 ~ 46230035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>trnac-gca
gggggtatagctcagtggtagagcatttgactgcagatcaagaggtccccgGTTCAAATCCGGGTGCCCCCT

Function

NR:

description
cilia- and flagella-associated protein 157

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca True 72 mRNA 0.56 1 46229964 46230035

Neighbor

gene id symbol gene type direction distance location
LOC110534070 ccd82 coding upstream 8319 46218372 ~ 46221645 (+)
LOC110534066 pdk3 coding upstream 67644 46151680 ~ 46162320 (+)
LOC110534065 LOC106603181 coding upstream 78427 46143690 ~ 46151537 (+)
LOC110534064 LOC106603075 coding upstream 102628 46105321 ~ 46127336 (+)
phldb2a LOC106603077 coding upstream 140151 46068405 ~ 46089813 (+)
lipia LOC106603069 coding downstream 33559 46263594 ~ 46278516 (+)
prdx4 prdx4 coding downstream 144662 46374697 ~ 46382856 (+)
sat1a.2 sat1 coding downstream 162877 46392912 ~ 46395196 (+)
c10hxorf58 cssa04hxorf58 coding downstream 174273 46404308 ~ 46421729 (+)
LOC110534088 LOC106603060 coding downstream 202729 46432764 ~ 46442767 (+)
G894248 NA non-coding upstream 20080 46209461 ~ 46209884 (+)
G894228 NA non-coding upstream 49228 46180464 ~ 46180736 (+)
G894215 NA non-coding upstream 81835 46147875 ~ 46148129 (+)
G894212 NA non-coding upstream 90511 46139178 ~ 46139453 (+)
G894133 NA non-coding upstream 96233 46130941 ~ 46133731 (+)
G894321 LOC106603070 non-coding downstream 49587 46279622 ~ 46280157 (+)
G894289 NA non-coding downstream 73626 46303661 ~ 46304186 (+)
G894294 NA non-coding downstream 76567 46306602 ~ 46313915 (+)
G894309 NA non-coding downstream 85364 46315399 ~ 46315876 (+)
G894300 NA non-coding downstream 91144 46321179 ~ 46323120 (+)
G894204 LOC100136012 other upstream 112021 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 328153 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 586408 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 637655 45553481 ~ 45592329 (+)
G892499 LOC106603104 other upstream 1219115 45008834 ~ 45010849 (+)
G894437 LOC106603023 other downstream 397257 46627292 ~ 46700540 (+)
G895515 NA other downstream 810479 47040514 ~ 47042783 (+)
LOC110511048 LOC106603033 other downstream 912009 47132135 ~ 47151549 (+)
G895652 LOC106603032 other downstream 972890 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 986372 47216407 ~ 47217071 (+)

Expression


Co-expression Network