LOC118966789


Basic Information

Item Value
gene id LOC118966789
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46453335 ~ 46454158 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005053686.1
GAAAAGGAACCGAACTGGCATAAAGTCACCAGAATAAGACGGGAGGTATGCAAAGTATCACAGCACTAGGATGAAGTCATTGCTGATCGTGGTGCTTGTGGTGGTGTGTCTATTGCTGACTGAATCTGATGGAAAACGCAAAACCAAGAAAAATAGGATCTCATTACCCAGAGGAGTGAAGAAGATTCAAGAGGCCCTGGACCCTAATCGAATTGTAAATACTTTGAAATGGAAAACTAGATCCAAAGATCTGGCTAAAGTAACAGAGGACGCCATTGTAAATGAACAT
>TU1018482
CGGGAGGTATGCAAAGTATCACAGCACTAGGATGAAGTCATTGCTGATCGTGGTGCTTGTGGTGGTGTGTCTATTGCTGACTGAATCTGATGGAAAACGCAAAACCAAGAAAAATAGGATCTCATTACCCAGAGGAGTGAAGAAGATTCAAGAGGCCCTGGACCCTAATCGAATTGTAAATACTTTGAAATGGAAAACTAGATCCAAAGATCTGGCTAAAGTAACAGAGGACGCCATTGTAAATGAAC
>TU1018483
CAGGAGAACCTTGAGTGACTGACTCAGTTGACCGGACCTCCCTGTTTTATATTTTTAGATGGAAAACGCAAAACCAAGAAAAATAGGATCTCATTACCCAGAGGAGTGAAGAAGATTCAAGAGGCCCTGGACCCTAATCGAATTGTAAATACTTTGAAATGGAAAACTAGATCCAAAGATCTGGCTAAAGTAACAGAGGACGCCATTGTAAATGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005053686.1 False 289 mRNA 0.42 4 46453335 46454158
TU1018482 False 248 lncRNA 0.42 4 46453337 46454119
TU1018483 True 217 lncRNA 0.41 3 46453337 46453937

Neighbor

gene id symbol gene type direction distance location
LOC110534089 LOC106603057 coding downstream 5714 46445340 ~ 46447621 (-)
apooa cx033 coding downstream 48337 46395581 ~ 46404998 (-)
LOC110534083 LOC106603064 coding downstream 91842 46349017 ~ 46361493 (-)
LOC110534081 LOC106603065 coding downstream 109991 46331164 ~ 46343344 (-)
LOC110534082 LOC106603066 coding downstream 122611 46325669 ~ 46330724 (-)
LOC118966787 NA coding upstream 8865 46463023 ~ 46464945 (-)
LOC118966788 NA coding upstream 15122 46455259 ~ 46470576 (-)
LOC110534092 LOC106603055 coding upstream 29140 46483298 ~ 46488442 (-)
LOC110534093 LOC106603053 coding upstream 41645 46495803 ~ 46504012 (-)
mtif3 mtif3 coding upstream 89907 46544065 ~ 46550149 (-)
G895151 NA non-coding downstream 65331 46387673 ~ 46388004 (-)
G895149 NA non-coding downstream 66542 46386003 ~ 46386793 (-)
G895137 NA non-coding downstream 70489 46375054 ~ 46382846 (-)
G895107 NA non-coding downstream 105130 46346930 ~ 46348205 (-)
G895100 NA non-coding downstream 107257 46343492 ~ 46346078 (-)
G895205 wasf3 non-coding upstream 55480 46509638 ~ 46513752 (-)
G895208 NA non-coding upstream 60715 46514873 ~ 46515820 (-)
G895210 NA non-coding upstream 64631 46518789 ~ 46519097 (-)
G895211 NA non-coding upstream 66700 46520858 ~ 46521316 (-)
G894917 NA other downstream 534996 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 703004 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 1437288 45011329 ~ 45017446 (-)
G893541 NA other downstream 1684263 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 2144402 44303605 ~ 44308978 (-)
LOC110534118 LOC106603020 other upstream 776646 47203241 ~ 47234608 (-)
G896841 NA other upstream 1533603 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 2427569 48881449 ~ 48907973 (-)
G899409 NA other upstream 3702034 50156192 ~ 50156902 (-)
G899421 NA other upstream 3728238 50182396 ~ 50182788 (-)

Expression


Co-expression Network