LOC118966788


Basic Information

Item Value
gene id LOC118966788
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46455259 ~ 46470576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118966788
TCATGTGATCATGACAGTATAAACATTAATTTACGTAATCTTTAGTAGGTATTTTAAGCTGTAACTAACCAACTTCAACTATTCATGATGATGTGTGGCGCTGTTTCCCAGGTGAGCGATGCCACGCCCAAAGTGCAGCAAATATGCGATAAGATGAAGCCTCATGCAGAGAAGAAAGCTGGGAAAGAAGTTTGATGTTTTCACCACCAAAACATTCACAACCCAAGTTGTTGCTGGGACCAACTTCTTCATTAAAGTCCATGTTGGTGGAGATGAATTTATGCACCTGCGCGTCCATCAAACACTACCCCACGCTGGCAGGAAACTGGAGCTGCATAGAGTACAGACTCCAAAAACTCACATTGACCCTATTGGTTTCTTCTGAATACCTGTAACTCCCTGCAGAGGATGCCACCCCCATAATCCAGCCAACAGCCTCCATGCCTGCTCTGGATCATGTGTACCCTTGTTTTTATGCTCACCTgtattgtactatactgtattgtatactTACATTGGTAAATGTCTGTCTTTACTAAAGGCCATTGACGCCTTTTGACTAAATGTATTTGGACTACAATGTAAATAAACATTTGGCAGCTGA
>TU1018489
TGTAACTAACCAACTTCAACTATTCATGATGATGTGTGGCGCTGTTTCCCAGGTGAGCGATGCCACGCCCAAAGTGCAGCAAATATGCGATAAGATGAAGCCTCATGCAGAGAAGAAAGCTGGGAAAGAAGTTTGATGTTTTCACCACCAAAACATTCACAACCCAAGTTGTTGCTGGGACCAACTTCTTCATTAAAGTCCATGTTGGTGGAGATGAATTTATGCACCTGCGCGTCCATAAAACACTACCCCACGCTGGCGGGAAACTGGAGCTGCATAGAGTACAGACTCCAAAAACTCACAATGACCCTATTGGTTTCTTCTGAATACCTGTAACTCCCTGCAGATGATGCCACCCCCATAATCCAACCAACAGCCTCCATGCCTGCTCTGGATCATGTGTACCCATTTTATGCTCACC
>TU1018488
TGTAACTAACCAACTTCAACTATTCATGATGATGTGTGGCGCTGTTTCCCAGGTGAGCGATGCCACGCCCAAAGTGCAGCAAATATGCGATAAGATGAAGCCTCATGCAGAGAAGAAAGCTGGGAAAGAAGTTTGATGTTTTCACCACCAAAACATTCACAACCCAAGTTGTTGCTGGGACCAACTTCTTCATTAAAGTCCATGTTGGTGGAGATGAATTTATGCACCTGCGCGTCCATCAAACACTACCCCACGCTGGCAGGAAACTGGAGCTGCATAGAGTACAGACTCCAAAAACTCACATTGACCCTATTGGTTTCTTCTGAATACCTGTAACTCCCTGCAGAGGATGCCACCCCCATAATCCAGCCAACAGCCTCCATGCCTGCTCTGGATCATGTGTACCCTTGTTTTTATGCTCACC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004869 cysteine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118966788 False 604 mRNA 0.47 3 46469280 46470576
TU1018489 False 421 lncRNA 0.47 4 46455259 46470517
TU1018488 True 424 lncRNA 0.47 3 46469401 46470517

Neighbor

gene id symbol gene type direction distance location
LOC118966787 NA coding downstream 4335 46463023 ~ 46464945 (-)
LOC118966789 NA coding downstream 15122 46453335 ~ 46454158 (-)
LOC110534089 LOC106603057 coding downstream 21659 46445340 ~ 46447621 (-)
apooa cx033 coding downstream 64282 46395581 ~ 46404998 (-)
LOC110534083 LOC106603064 coding downstream 107787 46349017 ~ 46361493 (-)
LOC110534092 LOC106603055 coding upstream 12722 46483298 ~ 46488442 (-)
LOC110534093 LOC106603053 coding upstream 25227 46495803 ~ 46504012 (-)
mtif3 mtif3 coding upstream 73489 46544065 ~ 46550149 (-)
LOC110534101 LOC106603048 coding upstream 151500 46622076 ~ 46633291 (-)
LOC118966791 NA coding upstream 170088 46640664 ~ 46642200 (-)
G895151 NA non-coding downstream 81276 46387673 ~ 46388004 (-)
G895149 NA non-coding downstream 82487 46386003 ~ 46386793 (-)
G895137 NA non-coding downstream 86434 46375054 ~ 46382846 (-)
G895107 NA non-coding downstream 121075 46346930 ~ 46348205 (-)
G895205 wasf3 non-coding upstream 39062 46509638 ~ 46513752 (-)
G895208 NA non-coding upstream 44297 46514873 ~ 46515820 (-)
G895210 NA non-coding upstream 48213 46518789 ~ 46519097 (-)
G895211 NA non-coding upstream 50282 46520858 ~ 46521316 (-)
G895212 NA non-coding upstream 51931 46522507 ~ 46522758 (-)
G894917 NA other downstream 550941 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 718949 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 1453233 45011329 ~ 45017446 (-)
G893541 NA other downstream 1700208 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 2160347 44303605 ~ 44308978 (-)
LOC110534118 LOC106603020 other upstream 760228 47203241 ~ 47234608 (-)
G896841 NA other upstream 1517185 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 2411151 48881449 ~ 48907973 (-)
G899409 NA other upstream 3685616 50156192 ~ 50156902 (-)
G899421 NA other upstream 3711820 50182396 ~ 50182788 (-)
LOC110534081 LOC106603065 coding downstream 111915 46331164 ~ 46343344 (-)

Expression


Co-expression Network