LOC110534093 (LOC106603053)


Basic Information

Item Value
gene id LOC110534093
gene name LOC106603053
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46495803 ~ 46504012 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618760.2
ttttggtGCTTTGTAATATGATGGACACTTCCAAGCTTCCTAAAATCCGTGATGAGGAGAGGGAAAGCGAGTTTGGATATGTACATGGAGTTTCTGGGCCAGTGGTGACAGCTACCGCCATGGCAGGAGCGGCCATGTACGAGCTTGTGCGTGTGGGCCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCAACCATTCAGGTCTACGAAGAGACCTCTGGTGTGTCTGTCGGAGACCCTGTCCTTCGGACAGGAAAGCCCCTGTCTGTAGAGTTGGGGCCGGGTATCATGGGGTCCATCTTTGATGGTATCCAGCGTCCCCTCAAAGACATCAATGACCTCACTCAAAGCATATATATCCCTAGAGGAGTCAACATTGGGGCCCTCAACCGTGACCTCAAGTGGGAGTTTACACCTGGCCAGAGTCTTCGAACTGGCAGTCACATAACAGGTGGGGATATCTATGGCACGGTGTTTGAGAACTCCCTGATCAAGCACAAGTTGATGCTCCCACCCCGGAGCAGAGGCACTGTCACCTACGTGGCCCCTCCTGGAAACTATGATGTCAATGATGTGGTGCTGGAACTGGAGTTTGAGGGTTTGAAGGAGAAGTTTACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGCTGCCTGCCAATCACCCCCTGCTTACTGGCCAGAGAGTGTTGGATGCTCTCTTCCCGTGTGTCCAGGGAGGCACCACCGCTATCCCAGGAGCCTTTGGTTGTGGCAAGACTGTGATCTCACAGTCCCTGTCCAAGTATTCCAACAGTGATGTCATCATCTATGTGGGCTGCGGAGAGCGTGGAAATGAGATGTCTGAAGTGCTGAGAGATTTCCCTGAGCTTACAATGGAAGTGGATGGAAAGGTGGAAAGTATCATGAAGAGAACAGCGCTAGTGGCCAACACTTCCAACATGCCTGTCGCTGCTAGAGAGGCCTCCATTTACACAGGAATCACTCTGTCCGAGTACTTCAGAGACATGGGCTACAATGTCAGTATGATGGCCGACTCCACCTCCCGATGGGCAGAGGCTCTTAGGGAGATCTCAGGACGATTAGCTGAGATGCCTGCTGACAGCGGGTACCCTGCCTACCTGGGAGCCAGACTGGCCTCCTTCTATGAGCGTGCTGGCAGGGTGAAGTGCCTGGgcaacccagagagagagggcagcgtCAGCATTGTTGGAGCTGTGTCTCCCCCTGGTGGAGACTTCTCGGATCCTGTTACTTCAGCTACGCTGGGTATTGTACAGgtgttctggggtctggataaGAAGCTGGCGCAGAGAAAGCATTTCCCCTCAGTGAACTGGCTGATCAGCTACAGCAAGTACACGCGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTTGTGCCGCTTCGCACCAAGGCCAAGGAGATCctgcaggaggaggaggatctgGCTGAGATTGTGCAGCTTGTGGGAAAGGCATCTCTCGCTGAGACCGACAAGATCACATTGGAGGTTGCTAAACTACTCAAGGATGACTTCCTGCAGCAGAATGGCTATACTCCATACGacagGTTCTGCCCTTTCTACAAAACGGTGGGCATCCTCTCCAATACGATTGCGTTCTACGACTTGGCGCGACATGCAGTCGAGACCACGGCTCAGAGTGACAACAAGATCACCTGGTCCATGATCAGGGAGCACATGGGAGAGGTCCTCTACAGGCTCAGCTCCATGAAGTTCAAGGACCCAGTGAAGGAGGGCGAGGTCAAAATCAAAGCAGACTACGCCCAGCTACTGGAGGACATGCAGAACGCCTTCCGTACCCTGGAAGACTGAGCTCTCACCTCCCCTCTGAGGCCCCCCAGTCCCTGTGCTGTGCCGTGCAGTATCTCAGTGGCCCCTGTTTTGTGAAACCTTGCTGCAGTGACCGTCACACCTCAGTCATTCCTAAGTGTTCATTCCTCTACATTCCAACACTATGTTCAAGCACCCCGTTTACAACCCTTGCTCTTTTTATTTCACCATATTGTCTTGTACGAGGCTACTGGAATATTTTCTCCCGAGTGGCGCtacggtctaagacactgcatctcagtgcaagaggcgtcactacagtccctgtttcgtatccaggctgaatcacatccagccgtgattgggagtcccatagggcggcgcacaattgtggcccagcgtcgtccggggtaggctgtcattgtaaataagaatctgttcttaactgacttgcctagttaaataaaggttacaaaaaTGTAACTTGAATTCATTGATACCAAATCTCATCCATTAGTCTATTAACATTACAATACCGTCATCCCTGACCACATCGCATGGATGTGCTGCTCCTCTCCCTTCAGCCCCCTCGTCATCCATGATGAGCACACGACTACAGCCGTTATTGCAGGCCAATATACATTGGGCCCCAATCAGGTGCTACACTTGCACTTAACTACTAGCTGCAACACATGGCCTCTCAAGTGGAGTGTCACTTTCATCTCCCAGGTGTGACCACCAACAATAGATTGTTAACAAAAATGGGAATGTACACATGGTTAAAGGGACAGAGGCACCTTGTTTATTTCAGGTTGaggccctcttcctctccccgcCTCACAGATGTGATTTTTGCTATTCCATCTCTCTGGGTATATTGATGTTGTTGACGTTaatgttgtttttgtgttgtgtggatgtgtgcgaCGGAGATGGTGTGTATGTTAGAATCGGTTGTCTCCACAAAGGTATATTTATGTCACATGTATTGTATGGAGTctaaagaaaataaatgaatTGGGAACAATA
>XM_021618761.2
tctcagtcaatttaccggGTAAAAATAGAGTATCTAATTTGACTAAGATGCTATGCAAAGAAATAGTTAGACTCTGACTGTATCCTTGTAAACCATGTCATTGAGGAAATAATCTCAAGGATATTAGAACGCAGCCACAGCCGCGTTCGAGCTAAGGGATTGAAACTGTGGCGCTGTTACGCCATTTTGACTCCCATAGCCCGTCTATCCTAATGTAAAACAGGGCTTTGAGCCAAAATGGTAATTGTTTCCCAAGATAGTCTTGCGTTGGTCAGCTGATCACGGCTCATCCCCTTCGAAAATACATTTTCTTAAGGGTCCTGGAACATTGCACAGTAAGAAAAGATGGACACTTCCAAGCTTCCTAAAATCCGTGATGAGGAGAGGGAAAGCGAGTTTGGATATGTACATGGAGTTTCTGGGCCAGTGGTGACAGCTACCGCCATGGCAGGAGCGGCCATGTACGAGCTTGTGCGTGTGGGCCACAGTGAGCTGGTGGGAGAGATCATCAGGCTGGAGGGAGACATGGCAACCATTCAGGTCTACGAAGAGACCTCTGGTGTGTCTGTCGGAGACCCTGTCCTTCGGACAGGAAAGCCCCTGTCTGTAGAGTTGGGGCCGGGTATCATGGGGTCCATCTTTGATGGTATCCAGCGTCCCCTCAAAGACATCAATGACCTCACTCAAAGCATATATATCCCTAGAGGAGTCAACATTGGGGCCCTCAACCGTGACCTCAAGTGGGAGTTTACACCTGGCCAGAGTCTTCGAACTGGCAGTCACATAACAGGTGGGGATATCTATGGCACGGTGTTTGAGAACTCCCTGATCAAGCACAAGTTGATGCTCCCACCCCGGAGCAGAGGCACTGTCACCTACGTGGCCCCTCCTGGAAACTATGATGTCAATGATGTGGTGCTGGAACTGGAGTTTGAGGGTTTGAAGGAGAAGTTTACCATGATCCAGGTCTGGCCAGTGCGACAGATTCGCCCGGTCACAGAGAAGCTGCCTGCCAATCACCCCCTGCTTACTGGCCAGAGAGTGTTGGATGCTCTCTTCCCGTGTGTCCAGGGAGGCACCACCGCTATCCCAGGAGCCTTTGGTTGTGGCAAGACTGTGATCTCACAGTCCCTGTCCAAGTATTCCAACAGTGATGTCATCATCTATGTGGGCTGCGGAGAGCGTGGAAATGAGATGTCTGAAGTGCTGAGAGATTTCCCTGAGCTTACAATGGAAGTGGATGGAAAGGTGGAAAGTATCATGAAGAGAACAGCGCTAGTGGCCAACACTTCCAACATGCCTGTCGCTGCTAGAGAGGCCTCCATTTACACAGGAATCACTCTGTCCGAGTACTTCAGAGACATGGGCTACAATGTCAGTATGATGGCCGACTCCACCTCCCGATGGGCAGAGGCTCTTAGGGAGATCTCAGGACGATTAGCTGAGATGCCTGCTGACAGCGGGTACCCTGCCTACCTGGGAGCCAGACTGGCCTCCTTCTATGAGCGTGCTGGCAGGGTGAAGTGCCTGGgcaacccagagagagagggcagcgtCAGCATTGTTGGAGCTGTGTCTCCCCCTGGTGGAGACTTCTCGGATCCTGTTACTTCAGCTACGCTGGGTATTGTACAGgtgttctggggtctggataaGAAGCTGGCGCAGAGAAAGCATTTCCCCTCAGTGAACTGGCTGATCAGCTACAGCAAGTACACGCGGGCGCTGGACGAGTACTACGACAAGCACTTCCCTGAGTTTGTGCCGCTTCGCACCAAGGCCAAGGAGATCctgcaggaggaggaggatctgGCTGAGATTGTGCAGCTTGTGGGAAAGGCATCTCTCGCTGAGACCGACAAGATCACATTGGAGGTTGCTAAACTACTCAAGGATGACTTCCTGCAGCAGAATGGCTATACTCCATACGacagGTTCTGCCCTTTCTACAAAACGGTGGGCATCCTCTCCAATACGATTGCGTTCTACGACTTGGCGCGACATGCAGTCGAGACCACGGCTCAGAGTGACAACAAGATCACCTGGTCCATGATCAGGGAGCACATGGGAGAGGTCCTCTACAGGCTCAGCTCCATGAAGTTCAAGGACCCAGTGAAGGAGGGCGAGGTCAAAATCAAAGCAGACTACGCCCAGCTACTGGAGGACATGCAGAACGCCTTCCGTACCCTGGAAGACTGAGCTCTCACCTCCCCTCTGAGGCCCCCCAGTCCCTGTGCTGTGCCGTGCAGTATCTCAGTGGCCCCTGTTTTGTGAAACCTTGCTGCAGTGACCGTCACACCTCAGTCATTCCTAAGTGTTCATTCCTCTACATTCCAACACTATGTTCAAGCACCCCGTTTACAACCCTTGCTCTTTTTATTTCACCATATTGTCTTGTACGAGGCTACTGGAATATTTTCTCCCGAGTGGCGCtacggtctaagacactgcatctcagtgcaagaggcgtcactacagtccctgtttcgtatccaggctgaatcacatccagccgtgattgggagtcccatagggcggcgcacaattgtggcccagcgtcgtccggggtaggctgtcattgtaaataagaatctgttcttaactgacttgcctagttaaataaaggttacaaaaaTGTAACTTGAATTCATTGATACCAAATCTCATCCATTAGTCTATTAACATTACAATACCGTCATCCCTGACCACATCGCATGGATGTGCTGCTCCTCTCCCTTCAGCCCCCTCGTCATCCATGATGAGCACACGACTACAGCCGTTATTGCAGGCCAATATACATTGGGCCCCAATCAGGTGCTACACTTGCACTTAACTACTAGCTGCAACACATGGCCTCTCAAGTGGAGTGTCACTTTCATCTCCCAGGTGTGACCACCAACAATAGATTGTTAACAAAAATGGGAATGTACACATGGTTAAAGGGACAGAGGCACCTTGTTTATTTCAGGTTGaggccctcttcctctccccgcCTCACAGATGTGATTTTTGCTATTCCATCTCTCTGGGTATATTGATGTTGTTGACGTTaatgttgtttttgtgttgtgtggatgtgtgcgaCGGAGATGGTGTGTATGTTAGAATCGGTTGTCTCCACAAAGGTATATTTATGTCACATGTATTGTATGGAGTctaaagaaaataaatgaatTGGGAACAATA

Function

NR:

description
V-type proton ATPase catalytic subunit A-like isoform X1

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function
GO:0046961 proton-transporting ATPase activity, rotational mechanism molecular_function

KEGG:

id description
K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618760.2 False 2861 mRNA 0.51 15 46495803 46503421
XM_021618761.2 True 3186 mRNA 0.50 15 46495803 46504012

Neighbor

gene id symbol gene type direction distance location
LOC110534092 LOC106603055 coding downstream 7361 46483298 ~ 46488442 (-)
LOC118966788 NA coding downstream 25227 46455259 ~ 46470576 (-)
LOC118966787 NA coding downstream 30858 46463023 ~ 46464945 (-)
LOC118966789 NA coding downstream 41645 46453335 ~ 46454158 (-)
LOC110534089 LOC106603057 coding downstream 48182 46445340 ~ 46447621 (-)
mtif3 mtif3 coding upstream 40053 46544065 ~ 46550149 (-)
LOC110534101 LOC106603048 coding upstream 118064 46622076 ~ 46633291 (-)
LOC118966791 NA coding upstream 136652 46640664 ~ 46642200 (-)
LOC110534100 LOC106603048 coding upstream 143121 46647133 ~ 46661803 (-)
LOC110534103 NA coding upstream 181585 46685597 ~ 46690276 (-)
G895151 NA non-coding downstream 107799 46387673 ~ 46388004 (-)
G895149 NA non-coding downstream 109010 46386003 ~ 46386793 (-)
G895137 NA non-coding downstream 112957 46375054 ~ 46382846 (-)
G895205 wasf3 non-coding upstream 5626 46509638 ~ 46513752 (-)
G895208 NA non-coding upstream 10861 46514873 ~ 46515820 (-)
G895210 NA non-coding upstream 14777 46518789 ~ 46519097 (-)
G895211 NA non-coding upstream 16846 46520858 ~ 46521316 (-)
G895212 NA non-coding upstream 18495 46522507 ~ 46522758 (-)
G894917 NA other downstream 577464 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 745472 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 1479756 45011329 ~ 45017446 (-)
G893541 NA other downstream 1726731 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 2186870 44303605 ~ 44308978 (-)
LOC110534118 LOC106603020 other upstream 726792 47203241 ~ 47234608 (-)
G896841 NA other upstream 1483749 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 2377715 48881449 ~ 48907973 (-)
G899409 NA other upstream 3652180 50156192 ~ 50156902 (-)
G899421 NA other upstream 3678384 50182396 ~ 50182788 (-)

Expression


Co-expression Network