LOC110534101 (LOC106603048)


Basic Information

Item Value
gene id LOC110534101
gene name LOC106603048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46622076 ~ 46633291 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618772.2
gttaaacctcaCAAAAGAAGAAGTAATGTAATTACGTGGGGGACTTTTATTCTGAAATTCCGTTAAGGGAATAAGCTACTGTTTTTATGTCGCTGGTAGATGGATAAATTATAAATATCGTTGGTCAGACTGTAGCCACTAAATTTAACGAAATACCCAGAAAGGAGGCTCCTTGAAAGAATAAACTTCTCTGTGCCCTGGATGTTTGAGGATGGAGGGCAGTGAGGGAAACAGCTCTGCACACCAAGGATCTGGTGATGGAGCTATGAACTTATATGCCACTCTGGGGCTCTCTCCCGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAACGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGCAACTGAAGGCCAATCGAGCCAAGcaagaggagcagggagaggcctccccagagagagacagccgGCAGGAGGATACAGATGATGGAGTCCTTAGCAAACGGGACAGTCCCCCTGCAGTACCTCGCCGGTCAAACAGCCATTGTCACACTGACTATAGGAGAGTGGAGATTCACAGTCGACCAGAGCGGCGGACTGAGACGAGAGATTCCCGTCACAATTGGTCCTCAAGGGAAAAACCATCCGAGACCCAGCAAAGGTTTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTACTAAGGAATGGAAGGATCATGTCAATGGATTAAGCCACGTGGAGGGCTGTCGAGAACTCCTGCGTCTatatcCAGATTGGAAAAGACCTGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGTCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACTATTTGAAGCCCAAGGTTGGCACAAAGGTGGTGGTTACAAAATTTCCCCTTGGCTCTGTTGGTGTAGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGATTCCTGGAGTTTGATTCTCACAAAGAGGCAGTCAATATGGTGAATCACTTCAGTGAAAAGCAAGCATTCGTGAAGGGAAATAAGTTGACTCTGTACCTGTCACCGATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGATCAGGTCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTCAAGATCAATGGAAAGAGTGTCAAAGTATACTTGTCATCGTCACTGAAGCGCCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTTGCAAAACCTCAAACTCCACGAATGAAGAGAAACCCAGTACAGGCAAACAACCTGCTGAGAAAGTGATGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGCAGGACATCAAGGAGGAGGACGTTGATTTGGAAAACAAAGATCTAGATGGAAAGGGTATCCAGGTGGAACCTGAACAATGCTTGTCAGGTGATGAGGTTGGTGCTGGTGTTGCAACTAAAAACCCTGCTTCTTCCAAAAGTGCTTCTCTGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGTAGACGATACCTTGGAGGATTCTGACATCAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTTTCAATGGAGAACATGATGGAACAGGAGAGATTTCATGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTTGTTACATTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGCTGGAGTCAAAGGGTGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCAAGCAAACGTGAAAGTTGTCGACCATGCCATATCCTTCCTCAGAAAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACCAGTCAGTGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGGCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAGCCTTTCGGGAAAATCACTGGCTATAATTTGAACTGGCATCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCACCAGTCAAATATGAGCTGTGGTTGGCTGGTCAGAACAACAGAAGATCAAGAGATCATCAAGGAGATGAAAAGTCTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGCGGGTCTGTGGGGACCCTGAGGGTGAGGAAGCCAGTGGTGTGGAAGCTatcccagaggaggaggaggagaagaagcagAAGGAACCTCTGGGCCCTTATCAACCTGACAACCCTGTTGGGTTAGACTATCTGGTGCCAAGGACTGGATTCTTCTGCAAGCTGTGCAACATCTTCTACACCAATGGGGAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGATGGACATAGATCTCGGCTGATTTGAGAGGATTGTCATCCACCTGTGGTCTTCCCAGAGGAAGGCCGTTTTAGTATAAACGTTTCTGTCCAGTTTAACATTCCAGTCTCTTCTGTTACTGTTGACAACAGTTACCCATTTGAAATTAATTAATGCAGCCTATTTACGAAATGTAGTCCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTTTCCTCTTATTGAATAAACAAACATTTGACTTATT
>XM_036990509.1
tCCCAACCTTCCAGGCATGAGAATAAACTTCTCTGTGCCCTGGATGTTTGAGGATGGAGGGCAGTGAGGGAAACAGCTCTGCACACCAAGGATCTGGTGATGGAGCTATGAACTTATATGCCACTCTGGGGCTCTCTCCCGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAACGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGCAACTGAAGGCCAATCGAGCCAAGcaagaggagcagggagaggcctccccagagagagacagccgGCAGGAGGATACAGATGATGGAGTCCTTAGCAAACGGGACAGTCCCCCTGCAGTACCTCGCCGGTCAAACAGCCATTGTCACACTGACTATAGGAGAGTGGAGATTCACAGTCGACCAGAGCGGCGGACTGAGACGAGAGATTCCCGTCACAATTGGTCCTCAAGGGAAAAACCATCCGAGACCCAGCAAAGGTTTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTACTAAGGAATGGAAGGATCATGTCAATGGATTAAGCCACGTGGAGGGCTGTCGAGAACTCCTGCGTCTatatcCAGATTGGAAAAGACCTGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGTCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACTATTTGAAGCCCAAGGTTGGCACAAAGGTGGTGGTTACAAAATTTCCCCTTGGCTCTGTTGGTGTAGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGATTCCTGGAGTTTGATTCTCACAAAGAGGCAGTCAATATGGTGAATCACTTCAGTGAAAAGCAAGCATTCGTGAAGGGAAATAAGTTGACTCTGTACCTGTCACCGATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGATCAGGTCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTCAAGATCAATGGAAAGAGTGTCAAAGTATACTTGTCATCGTCACTGAAGCGCCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTTGCAAAACCTCAAACTCCACGAATGAAGAGAAACCCAGTACAGGCAAACAACCTGCTGAGAAAGTGATGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGCAGGACATCAAGGAGGAGGACGTTGATTTGGAAAACAAAGATCTAGATGGAAAGGGTATCCAGGTGGAACCTGAACAATGCTTGTCAGGTGATGAGGTTGGTGCTGGTGTTGCAACTAAAAACCCTGCTTCTTCCAAAAGTGCTTCTCTGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGTAGACGATACCTTGGAGGATTCTGACATCAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTTTCAATGGAGAACATGATGGAACAGGAGAGATTTCATGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTTGTTACATTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGCTGGAGTCAAAGGGTGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCAAGCAAACGTGAAAGTTGTCGACCATGCCATATCCTTCCTCAGAAAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACCAGTCAGTGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGGCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAGCCTTTCGGGAAAATCACTGGCTATAATTTGAACTGGCATCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCACCAGTCAAATATGAGCTGTGGTTGGCTGGTCAGAACAACAGAAGATCAAGAGATCATCAAGGAGATGAAAAGTCTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGCGGGTCTGTGGGGACCCTGAGGGTGAGGAAGCCAGTGGTGTGGAAGCTatcccagaggaggaggaggagaagaagcagAAGGAACCTCTGGGCCCTTATCAACCTGACAACCCTGTTGGGTTAGACTATCTGGTGCCAAGGACTGGATTCTTCTGCAAGCTGTGCAACATCTTCTACACCAATGGGGAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGATGGACATAGATCTCGGCTGATTTGAGAGGATTGTCATCCACCTGTGGTCTTCCCAGAGGAAGGCCGTTTTAGTATAAACGTTTCTGTCCAGTTTAACATTCCAGTCTCTTCTGTTACTGTTGACAACAGTTACCCATTTGAAATTAATTAATGCAGCCTATTTACGAAATGTAGTCCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTTTCCTCTTATTGAATAAACAAACATTTGACTTATT
>XM_036990508.1
tctttgtttatatgagctatgtgtatgaatatttatataacaaatgtATACTTGGAAaacggaggaggaatggagggaaaaagagggagaagaagagagtgagCTTGAGTCGGGATAAAAACTGTGGGGAAAAATAGAGATGAATAAACTTCTCTGTGCCCTGGATGTTTGAGGATGGAGGGCAGTGAGGGAAACAGCTCTGCACACCAAGGATCTGGTGATGGAGCTATGAACTTATATGCCACTCTGGGGCTCTCTCCCGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAACGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGCAACTGAAGGCCAATCGAGCCAAGcaagaggagcagggagaggcctccccagagagagacagccgGCAGGAGGATACAGATGATGGAGTCCTTAGCAAACGGGACAGTCCCCCTGCAGTACCTCGCCGGTCAAACAGCCATTGTCACACTGACTATAGGAGAGTGGAGATTCACAGTCGACCAGAGCGGCGGACTGAGACGAGAGATTCCCGTCACAATTGGTCCTCAAGGGAAAAACCATCCGAGACCCAGCAAAGGTTTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTACTAAGGAATGGAAGGATCATGTCAATGGATTAAGCCACGTGGAGGGCTGTCGAGAACTCCTGCGTCTatatcCAGATTGGAAAAGACCTGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGTCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACTATTTGAAGCCCAAGGTTGGCACAAAGGTGGTGGTTACAAAATTTCCCCTTGGCTCTGTTGGTGTAGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGATTCCTGGAGTTTGATTCTCACAAAGAGGCAGTCAATATGGTGAATCACTTCAGTGAAAAGCAAGCATTCGTGAAGGGAAATAAGTTGACTCTGTACCTGTCACCGATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGATCAGGTCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTCAAGATCAATGGAAAGAGTGTCAAAGTATACTTGTCATCGTCACTGAAGCGCCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTTGCAAAACCTCAAACTCCACGAATGAAGAGAAACCCAGTACAGGCAAACAACCTGCTGAGAAAGTGATGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGCAGGACATCAAGGAGGAGGACGTTGATTTGGAAAACAAAGATCTAGATGGAAAGGGTATCCAGGTGGAACCTGAACAATGCTTGTCAGGTGATGAGGTTGGTGCTGGTGTTGCAACTAAAAACCCTGCTTCTTCCAAAAGTGCTTCTCTGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGTAGACGATACCTTGGAGGATTCTGACATCAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTTTCAATGGAGAACATGATGGAACAGGAGAGATTTCATGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTTGTTACATTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGCTGGAGTCAAAGGGTGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCAAGCAAACGTGAAAGTTGTCGACCATGCCATATCCTTCCTCAGAAAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACCAGTCAGTGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGGCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAGCCTTTCGGGAAAATCACTGGCTATAATTTGAACTGGCATCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCACCAGTCAAATATGAGCTGTGGTTGGCTGGTCAGAACAACAGAAGATCAAGAGATCATCAAGGAGATGAAAAGTCTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGCGGGTCTGTGGGGACCCTGAGGGTGAGGAAGCCAGTGGTGTGGAAGCTatcccagaggaggaggaggagaagaagcagAAGGAACCTCTGGGCCCTTATCAACCTGACAACCCTGTTGGGTTAGACTATCTGGTGCCAAGGACTGGATTCTTCTGCAAGCTGTGCAACATCTTCTACACCAATGGGGAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGATGGACATAGATCTCGGCTGATTTGAGAGGATTGTCATCCACCTGTGGTCTTCCCAGAGGAAGGCCGTTTTAGTATAAACGTTTCTGTCCAGTTTAACATTCCAGTCTCTTCTGTTACTGTTGACAACAGTTACCCATTTGAAATTAATTAATGCAGCCTATTTACGAAATGTAGTCCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTTTCCTCTTATTGAATAAACAAACATTTGACTTATT

Function

NR:

description
matrin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618772.2 False 3266 mRNA 0.47 21 46622076 46631868
XM_036990509.1 False 3108 mRNA 0.47 21 46622076 46632076
XM_036990508.1 True 3229 mRNA 0.47 21 46622076 46633291

Neighbor

gene id symbol gene type direction distance location
mtif3 mtif3 coding downstream 71927 46544065 ~ 46550149 (-)
LOC110534093 LOC106603053 coding downstream 118064 46495803 ~ 46504012 (-)
LOC110534092 LOC106603055 coding downstream 133634 46483298 ~ 46488442 (-)
LOC118966788 NA coding downstream 151500 46455259 ~ 46470576 (-)
LOC118966787 NA coding downstream 157131 46463023 ~ 46464945 (-)
LOC118966791 NA coding upstream 7373 46640664 ~ 46642200 (-)
LOC110534100 LOC106603048 coding upstream 13842 46647133 ~ 46661803 (-)
LOC110534103 NA coding upstream 52306 46685597 ~ 46690276 (-)
LOC110534102 LOC106603049 coding upstream 59715 46693006 ~ 46706498 (-)
LOC110534108 LOC106603043 coding upstream 194893 46828184 ~ 46855529 (-)
G895224 LOC106603050 non-coding downstream 6389 46611030 ~ 46615687 (-)
G895269 NA non-coding downstream 18313 46603342 ~ 46603763 (-)
G895267 NA non-coding downstream 20733 46601136 ~ 46601343 (-)
G895263 LOC106603051 non-coding downstream 26406 46594106 ~ 46595670 (-)
G895250 NA non-coding downstream 46223 46575127 ~ 46575853 (-)
G895282 NA non-coding upstream 12 46633303 ~ 46638272 (-)
G895323 NA non-coding upstream 99489 46732780 ~ 46733815 (-)
G895326 NA non-coding upstream 102819 46736110 ~ 46736355 (-)
G895328 NA non-coding upstream 106316 46739607 ~ 46740152 (-)
G895329 NA non-coding upstream 107502 46740793 ~ 46741017 (-)
G894917 NA other downstream 703737 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 871745 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 1606029 45011329 ~ 45017446 (-)
G893541 NA other downstream 1853004 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 2313143 44303605 ~ 44308978 (-)
LOC110534118 LOC106603020 other upstream 597513 47203241 ~ 47234608 (-)
G896841 NA other upstream 1354470 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 2248436 48881449 ~ 48907973 (-)
G899409 NA other upstream 3522901 50156192 ~ 50156902 (-)
G899421 NA other upstream 3549105 50182396 ~ 50182788 (-)

Expression


Co-expression Network