LOC110534100 (LOC106603048)


Basic Information

Item Value
gene id LOC110534100
gene name LOC106603048
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46647133 ~ 46661803 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021618771.2
AATCTTTATTCATCAAGGAATAAACTTCTCTGTGCCCTGACGGTTTGAGAATGGAGGACAGTGAGGCTCACAGCTCTGCACACCAAGGATCAGGTGATGGCGCGATGAGCACTATGAACTTATATGCCACTCTGGGGCTCTCTCCAGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAATGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGAAACTGAAGGCCAGTCGAGCCAAGCAAGAGGAGCAGGGACAGGCCTCCCCAAAGGGAGACAGCTGTCAGGAGGATACAGATGATGGAGACCTTAGCAAACGGGACAGTCCCCCTGCAGTCCCTCGTCGGTCAAACAGCCATATTGACACTGACTATAGGAGAGACACTGACTACAGTCGACCGGGGCGGCGACCACAGCGGACTGAAGCAAGGAGAGGTTCCCGTCACAATAGGCCCCCAATTGAAAAACCATCCGACAGCCAGCAAAAGATTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTAATAAGACATGGAAGGAACATCTCAATGGATTACGCCATGCGGATGGCTGTCTAGAACTCTCGCATCTATATCCAGATTGGAATAAACATGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGCCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACCATTTGAAGCCCAAGGCTGGCACAAAGGTGGTGGTCACAAAATTTCCCCTTGGCTCTGTTGGTGTTGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGCTTCCTGGAGTTTGATTCTCACAAAGAGGCTGTCAATATGGTGAATCACTTCAGTGTAAACCAAGCTTTCGTGAAGGAAATTAAGTTGAATCTGTACTTGTCACCTATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGACCAGGCCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTAAAGATCAGTGGAAAGAGTGTCAAAGTAATCTTGTCATCGTCAATGAAGCACCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTAGCAAGACCTCAAACGCCACGAACAAAGAGAAACCCACTACAGGCAAACAACCTGCTGAGAAAGTGTTGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGGAAGTGGTCAAGCAGGACATCGAGGAGGTGGTCAAGGAGGAGGACGTTGATTTGGAAAACAAAGCTCTAGACGAAGAGATTATCCAGGTGGAAGCTAAACAAAGCTTGTTAGGTGACGAGGTTGGTGCTGGTGTTGATACTAAAGACCCTGCTCCTTCCAAAAGTGCCTCTATGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGCAGACGATACCTTGGAGGATTCTGACGTAAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTCTCAATGGAGAACAAGATGGAACAGGAGAGCTTTCAAGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTCGTTACGTTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGTTGGAGTCAAAGGATGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCGGGCAAACGTGAAAGTTGTCAACCATGCCATATCCTTCCTCACACAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACATGTCAATGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGTCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAACCTTTTGGCAAAATCACTGGCTACAATTTGAACTGGCCTCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCTCCAGTCAAATATGAGCTGTGGTTGGCCAGTCAGAAAGACAGAAGATCAAGAGATCATCATGGAGATGAAAAGACTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGAGGGTCTGTGGGGACCCTAAAGGTGAAGAAGTCAGTGGTGTGGAAGCTAtcccagagggagaggagaaaaagaagGAGGAACCTCTGGGTCCTTATCAACCTGATAACCCTGTTGGGTTAGACTATCTGGTGCCACGGACTGGATTCTTCTGCAAGCTGTGCAACGTCTTCTACACCAATGAGAAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGGTGGATAAAGAAACAGACCTCGGCTGATTGAGAGGATTGTCGTCCACCTGTGGTTTTCCCAGAGGAAGGCCGTTTTAGTATAAATGTTTCTGTCCAGTTTGTTTAACATTCCAGGCTTTTCTGTTACTGTTGACAACAGTTACtcatttaaaataaattaattagtcCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTGTCCTCTTATTGAATAAACAAACGTTTGACTTAT
>XM_036990507.1
ACGAGACGCTGGTAGAAGAATAAACTTCTCTGTGCCCTGACGGTTTGAGAATGGAGGACAGTGAGGCTCACAGCTCTGCACACCAAGGATCAGGTGATGGCGCGATGAGCACTATGAACTTATATGCCACTCTGGGGCTCTCTCCAGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAATGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGAAACTGAAGGCCAGTCGAGCCAAGCAAGAGGAGCAGGGACAGGCCTCCCCAAAGGGAGACAGCTGTCAGGAGGATACAGATGATGGAGACCTTAGCAAACGGGACAGTCCCCCTGCAGTCCCTCGTCGGTCAAACAGCCATATTGACACTGACTATAGGAGAGACACTGACTACAGTCGACCGGGGCGGCGACCACAGCGGACTGAAGCAAGGAGAGGTTCCCGTCACAATAGGCCCCCAATTGAAAAACCATCCGACAGCCAGCAAAAGATTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTAATAAGACATGGAAGGAACATCTCAATGGATTACGCCATGCGGATGGCTGTCTAGAACTCTCGCATCTATATCCAGATTGGAATAAACATGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGCCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACCATTTGAAGCCCAAGGCTGGCACAAAGGTGGTGGTCACAAAATTTCCCCTTGGCTCTGTTGGTGTTGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGCTTCCTGGAGTTTGATTCTCACAAAGAGGCTGTCAATATGGTGAATCACTTCAGTGTAAACCAAGCTTTCGTGAAGGAAATTAAGTTGAATCTGTACTTGTCACCTATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGACCAGGCCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTAAAGATCAGTGGAAAGAGTGTCAAAGTAATCTTGTCATCGTCAATGAAGCACCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTAGCAAGACCTCAAACGCCACGAACAAAGAGAAACCCACTACAGGCAAACAACCTGCTGAGAAAGTGTTGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGGAAGTGGTCAAGCAGGACATCGAGGAGGTGGTCAAGGAGGAGGACGTTGATTTGGAAAACAAAGCTCTAGACGAAGAGATTATCCAGGTGGAAGCTAAACAAAGCTTGTTAGGTGACGAGGTTGGTGCTGGTGTTGATACTAAAGACCCTGCTCCTTCCAAAAGTGCCTCTATGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGCAGACGATACCTTGGAGGATTCTGACGTAAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTCTCAATGGAGAACAAGATGGAACAGGAGAGCTTTCAAGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTCGTTACGTTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGTTGGAGTCAAAGGATGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCGGGCAAACGTGAAAGTTGTCAACCATGCCATATCCTTCCTCACACAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACATGTCAATGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGTCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAACCTTTTGGCAAAATCACTGGCTACAATTTGAACTGGCCTCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCTCCAGTCAAATATGAGCTGTGGTTGGCCAGTCAGAAAGACAGAAGATCAAGAGATCATCATGGAGATGAAAAGACTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGAGGGTCTGTGGGGACCCTAAAGGTGAAGAAGTCAGTGGTGTGGAAGCTAtcccagagggagaggagaaaaagaagGAGGAACCTCTGGGTCCTTATCAACCTGATAACCCTGTTGGGTTAGACTATCTGGTGCCACGGACTGGATTCTTCTGCAAGCTGTGCAACGTCTTCTACACCAATGAGAAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGGTGGATAAAGAAACAGACCTCGGCTGATTGAGAGGATTGTCGTCCACCTGTGGTTTTCCCAGAGGAAGGCCGTTTTAGTATAAATGTTTCTGTCCAGTTTGTTTAACATTCCAGGCTTTTCTGTTACTGTTGACAACAGTTACtcatttaaaataaattaattagtcCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTGTCCTCTTATTGAATAAACAAACGTTTGACTTAT
>XM_021618770.2
TGAACATTTTGTAAATTCCGCGATGGGAAgtagtttttttttatgtcactGACGAGACGCTGGTAGAAGGTTAGTTAGTTACACATATCTTTGTCCAGACTGTAACGTTAGCCACCTAATTTTACGAAATACCCAAAAGGGTACTTCTTAAAAGAATAAACTTCTCTGTGCCCTGACGGTTTGAGAATGGAGGACAGTGAGGCTCACAGCTCTGCACACCAAGGATCAGGTGATGGCGCGATGAGCACTATGAACTTATATGCCACTCTGGGGCTCTCTCCAGAAGACGTGGATGCTCTGGCCCAGATTCCAGAGAATGAGATCAGTGTGGAGACGTTGCCTTATCTGATAATGAAACTGAAGGCCAGTCGAGCCAAGCAAGAGGAGCAGGGACAGGCCTCCCCAAAGGGAGACAGCTGTCAGGAGGATACAGATGATGGAGACCTTAGCAAACGGGACAGTCCCCCTGCAGTCCCTCGTCGGTCAAACAGCCATATTGACACTGACTATAGGAGAGACACTGACTACAGTCGACCGGGGCGGCGACCACAGCGGACTGAAGCAAGGAGAGGTTCCCGTCACAATAGGCCCCCAATTGAAAAACCATCCGACAGCCAGCAAAAGATTCCTTTCTCCTATCAAGTGGATGATTTTCATGGAGTTGTGCCCAAGGTTTACCCACACACATGCTCTCTATGCTTATGCATGTTGAATTCTAATAAGACATGGAAGGAACATCTCAATGGATTACGCCATGCGGATGGCTGTCTAGAACTCTCGCATCTATATCCAGATTGGAATAAACATGATACCCGGAAGGAAATGTCCAACTCCATCCCAAGTAGAGATGCTATTTCACCGCCCAGGAGAACGCCACGTCCTGCTATGCCGTACAAGAGACAACATAGCTCAGACCGCGTAGGAGGTGAAGTCTGGTCTGCACCAGAAAGACACCATTTGAAGCCCAAGGCTGGCACAAAGGTGGTGGTCACAAAATTTCCCCTTGGCTCTGTTGGTGTTGAAGACTTGATGACTTTGGCCAAGCCATTCGGCACGGTTGTAAAACATCTGGTGTTCCCCTGCAAGGGCTTCCTGGAGTTTGATTCTCACAAAGAGGCTGTCAATATGGTGAATCACTTCAGTGTAAACCAAGCTTTCGTGAAGGAAATTAAGTTGAATCTGTACTTGTCACCTATGGTGTGCAGTATTCATCCGCCAAGGTTGGATGAACCACCAGAAAAACGGCCGACCAAACAAGCTACCAATACAGTGGTTTGTTTTTCCCACCTACCTCCTGGGAAGGAAAGAGAATCAGAGATTCTTGATCTCGCCAAGATGTTTGGGGATGTGCGGCATTCAACATTTTCAAGTGACCAGGCCCTGATTGAGATGGTAGATTGGAAGGATGCTGACATTATGGTGAAGTACTACCACTCCAACCCCCTAAAGATCAGTGGAAAGAGTGTCAAAGTAATCTTGTCATCGTCAATGAAGCACCTGAGAGAAAGTCCTGACTCCACCACATCCAGAAGAGCAGATTCTAGTAAAGGCCGCAGCAGCAGACACAAGAGCGAGGAGACTAGCAAGACCTCAAACGCCACGAACAAAGAGAAACCCACTACAGGCAAACAACCTGCTGAGAAAGTGTTGGAACAAGGAGAAGGTCAACAAAGCACCTCAGAGGAGGTCAAGGAAGTGGTCAAGCAGGACATCGAGGAGGTGGTCAAGGAGGAGGACGTTGATTTGGAAAACAAAGCTCTAGACGAAGAGATTATCCAGGTGGAAGCTAAACAAAGCTTGTTAGGTGACGAGGTTGGTGCTGGTGTTGATACTAAAGACCCTGCTCCTTCCAAAAGTGCCTCTATGGTGGCTGATTCTAAAGATAAGGGGGAACCCGAAATCTCAGAACTTTTGGCAGACGATACCTTGGAGGATTCTGACGTAAAGGCTGCCGATGATCCAGCTCTGTGTGATGCTGACGTCTCAATGGAGAACAAGATGGAACAGGAGAGCTTTCAAGAAGATgacaatatggATGACATGGATTTCCCTGAGAATATGGATGACTTCGTTACGTTGGATGAACTTGACGACAGTACTGGAGGGGACACGCCGTTGGAGTCAAAGGATGCTTCATGGGATGGAAAAGTTGTCCATATTAGCCCAATTAGAAAGGGCTATGGAAACATGGCGGTGGCCCTATTGAAACTGGCAGAGCGGGCAAACGTGAAAGTTGTCAACCATGCCATATCCTTCCTCACACAGGAGGCATGGTTAGAGCTTGAAACTACTGAGGAAGTACGTGAAATGGTGAAATTCTACAAAGGAAAAGGACAGTTGTTGAGGAAACATGTCAATGTTAGCATGTGCTTTTCACAGAAAAAGTTGGAGAGTCCTAGTGGGAGATCCATCTACATTTGTATGCTTCCACTCCAGAAGTACTCTGACGTCTCTCTTTTACGACTTGCCCAACCTTTTGGCAAAATCACTGGCTACAATTTGAACTGGCCTCATGGAAAGTGTTATATCCAGTTGGAGAGCGTGGAAGCCGCTCAGAAAATGGTGAAGTACTTCCAACGTCCACACAAGTTCTACGGGACTCTGTTAAGAGTCAGTTTGTGCAAAAAGGGAGACTCACTAATATACTGGAAGCCTCCAGTCAAATATGAGCTGTGGTTGGCCAGTCAGAAAGACAGAAGATCAAGAGATCATCATGGAGATGAAAAGACTAATGGCCAGTCAACCAAAAGCCCCTATCCAGAGGATGTCCAGAGCCCTGTGTCTGACAGTGAGAGGGTCTGTGGGGACCCTAAAGGTGAAGAAGTCAGTGGTGTGGAAGCTAtcccagagggagaggagaaaaagaagGAGGAACCTCTGGGTCCTTATCAACCTGATAACCCTGTTGGGTTAGACTATCTGGTGCCACGGACTGGATTCTTCTGCAAGCTGTGCAACGTCTTCTACACCAATGAGAAAACAGCCAAATCAGTCCACTGTAGCAGTGAGGAACATTATCTGAACCTTAAGAGAAAGGTGGATAAAGAAACAGACCTCGGCTGATTGAGAGGATTGTCGTCCACCTGTGGTTTTCCCAGAGGAAGGCCGTTTTAGTATAAATGTTTCTGTCCAGTTTGTTTAACATTCCAGGCTTTTCTGTTACTGTTGACAACAGTTACtcatttaaaataaattaattagtcCCCTTCTGTGGTTATGAATAGTACCTGGATTTAGTGTCCTCTTATTGAATAAACAAACGTTTGACTTAT

Function

NR:

description
matrin-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021618771.2 False 3136 mRNA 0.47 21 46647133 46661430
XM_036990507.1 False 3136 mRNA 0.47 21 46647133 46661752
XM_021618770.2 True 3272 mRNA 0.46 21 46647133 46661803

Neighbor

gene id symbol gene type direction distance location
LOC118966791 NA coding downstream 4933 46640664 ~ 46642200 (-)
LOC110534101 LOC106603048 coding downstream 13842 46622076 ~ 46633291 (-)
mtif3 mtif3 coding downstream 96984 46544065 ~ 46550149 (-)
LOC110534093 LOC106603053 coding downstream 143121 46495803 ~ 46504012 (-)
LOC110534092 LOC106603055 coding downstream 158691 46483298 ~ 46488442 (-)
LOC110534103 NA coding upstream 23794 46685597 ~ 46690276 (-)
LOC110534102 LOC106603049 coding upstream 31203 46693006 ~ 46706498 (-)
LOC110534108 LOC106603043 coding upstream 166381 46828184 ~ 46855529 (-)
LOC110534112 LOC106603038 coding upstream 353991 47015794 ~ 47025503 (-)
trnaa-agc-4 NA coding upstream 364313 47026116 ~ 47026188 (-)
G895282 NA non-coding downstream 8861 46633303 ~ 46638272 (-)
G895224 LOC106603050 non-coding downstream 31446 46611030 ~ 46615687 (-)
G895269 NA non-coding downstream 43370 46603342 ~ 46603763 (-)
G895267 NA non-coding downstream 45790 46601136 ~ 46601343 (-)
G895263 LOC106603051 non-coding downstream 51463 46594106 ~ 46595670 (-)
G895323 NA non-coding upstream 70977 46732780 ~ 46733815 (-)
G895326 NA non-coding upstream 74307 46736110 ~ 46736355 (-)
G895328 NA non-coding upstream 77804 46739607 ~ 46740152 (-)
G895329 NA non-coding upstream 78990 46740793 ~ 46741017 (-)
G895331 LOC106603046 non-coding upstream 81608 46743411 ~ 46744099 (-)
G894917 NA other downstream 728794 45917279 ~ 45918339 (-)
LOC110534046 LOC107567170 other downstream 896802 45747090 ~ 45751405 (-)
LOC110534025 LOC106603111 other downstream 1631086 45011329 ~ 45017446 (-)
G893541 NA other downstream 1878061 44768450 ~ 44769072 (-)
LOC110534000 frmd8 other downstream 2338200 44303605 ~ 44308978 (-)
LOC110534118 LOC106603020 other upstream 569001 47203241 ~ 47234608 (-)
G896841 NA other upstream 1325958 47987761 ~ 47989076 (-)
LOC110534172 LOC106602940 other upstream 2219924 48881449 ~ 48907973 (-)
G899409 NA other upstream 3494389 50156192 ~ 50156902 (-)
G899421 NA other upstream 3520593 50182396 ~ 50182788 (-)

Expression


Co-expression Network