LOC110534110 (LOC106603042)


Basic Information

Item Value
gene id LOC110534110
gene name LOC106603042
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048574.1
NCBI id CM023228.2
chromosome length 87811138
location 46888000 ~ 46894991 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036990512.1
CCCCCTGTCTGAGATTTAGATATAAGTTTCACCGTGGCACGAAGCATTTCAAACTCATCACTGGAGCAAGGTTCTTCACATCGGACTATCATCACCACAGATCAACAACCAACCCTCTGGAATTAAATAATACGGTCTCGGTTTTACGTGGTCGAGAGTCTCTGAAACATTTTGTATTCGGTTCAGCTGCGCACTTATCAACTGCTGGGAGAATGGTGGAGGTGAGGAATATCTGTTGTATTGGGGCTGGCTACGTGGGCGGTCCCACCTGCAGCGTGATCGCCCAGATGTGCCCCGAGGTGACGGTTACCGTGGTGGACGTGAACGAGGACCGCATCCGTGCCTGGAATTCTGATAGCCTTCCCATCTTTGAGCCTGGACTCCAGGAAGTGGTGGACTCATGCCGCGGGGTCAACCTTTTCTTCTCCACAGACATCGATGAGGCCATAAGAAATGCAGACCTCGTTTTCATAtctGTCAATACGCCTACCAAGACATTTGGGATTGGCAAGGGTCGAGCAGCGGACCTGAAGTACATAGAAGCATGTGCCCGGCGCATTGCTGATGTGTCCATCGGGTGTAAGATTGTTGTAGAGAAAAGCACAGTTCCTGTACGTGCTGCTGAGAGCATCCGCCGCATCTTCAACGCCAACACCAAAAGTAGCTTGAACTTTCAGGTCCTCTCAAACCCAGAGTTTCTTGCTGAGGGAACAGCCATTGCTGATCTGAAGAATCCAGACAGGGTATTGATTGGAGGGGATGAGACCCCTGAGGGCCAACATGCTATTGAGGCCCTGCGGAGCATCTATGAGCACTGGGTCCCCAAAAGCAAGATTATCACCACCAACACCTGGTCCTCTGAGCTCTCCAAGCTGGCAGCCAATGCCTTTCTGGCCCAACGTATCAGTAGCATCAACTCCATCAGTGCCCTGTGCGAGGTAACTGGTGCTGATGTAGAGGAGGTGGCTCATGCCATCGGGACAGACCAGAGAATAGGCAGTTGCTTCCTGAAGGCCAGCGTGGGATTTGGTGGCAGCTGTTTCCAGAAGGATGTCCTCAATCTTGTGTACCTATGCGAGGTGCTAAACCTACCAGAGGTTGCAAGATACTGGCAACAGGTTATAGAGATAAACGATTACCAGCGAAAACGATTCTCTTCGCGGATAATCAGCTGCCTCTTCAACACAGTGACGGACAAGAAGATAGCCTTGCTAGGATTCGCTTTCAAGAAAAACACAGGCGATACAAGGGAATCCTCTAGTATCTACATCAGTCGCTACCTGCTGGAGGAGGGAGCCTGTCTACACATCTATGACCCCAAGGTTAAAGCGCAGCAGATCATGCACGACCTGATTCAGCCCACACCCTCAGAAAGACATGACCCCGCCACAGTTTCTCGTCTAGTCACAATCGTCACTGACCCATACAAGGCTTGTGAGAACGCCCATGCAATTGTCATCTGCACAGAGTGGGATATGTTCacgGAGCTGGACTATGAGAAGATCTATAAAGCCATGCTGAAACCTGCCTTCATCTTTGACGGTAGAAGGATCTTGGACAGCTTGCACGACCAACTCCAGCATATCGGCTTCCAGGTGGAGACTATTGGGAAAAGAGTTAACCAGAGGATCCACTTCACTGCCATCGAGGACAAGTCAGAAATAGACCAACAGCAACCATTAAAGAAGATCAAACTATGAAGTGTGCTTATGGGACAGGAGCGACAGAGCCAGCTCAGTGCAGTAATATATTAAACCAAGTTGTCATTTTTTATGTAATATTACATTAGTGGGATGGCTaggcggtataccgtattttactatatacaCCCCAAtattgatgcacggaccggtttgggtttttactttaccttctaacGGTGTTTCACatatttggtttgttaaatgtgtgATACGCGACTCACACGCGTGTAATgttcatttttatagtttactccctTTGCTACTTGGGccatcgctctccctctcctcctgcatGCCGCCGAAGAGGAAGAGGTTTTACTTGCTCATTTGCTACGTGAGGattatttgattgaatagaagtttcgtattggttaggttgttacgaatgcactgatataagtggacgcACGTTGCATTTTGGAAAcgttttagcatggacattgcctTTGAGGggttccaccattttaaagtagtcaggGATCCCTAtgagttgggagcaatcagccaatgaagaagatcattgactactttaaaatagaGAGCCTCAATGGCGTTGCCCTCGctgtcacagatgctataatgcacagataaaatgatgagtcctatacatctctatggcctgttgttcacacgcaTATTTGCCCTCTCGTTTGCAAGAAAGGTGATCTCGAccacctgatctcgcctcctcccgcctgccttccatctttgaggatgtgtatttccattgttagagtggtcacttgactatcttgtcaatataatgcCACGTGCATCCACTTATATCAGTCAATTTGTAACAACCTAAACATTACAAAACCTCTATTAGATCAAATAAGTCTACCGTAATTAGACACTCAGACTTCCATACAAAAAAGGGCTTATCACATGTGGACAAATTTTGGGTAGAGTAAATCCTctcgcttcacctcttcctctctgctttcACTCTGTCTGCATGGTCAGATGCAACGAGGTGTTGGGGATAATGATGCTGATTTATTCTTTGCTTCTTTATATACattgcattaggaaagtattcagaccccttaactttttccacattttgttgttacagccttattctaaaagggattcaattgtttttcttcttcttcatcaatctacacacaataccccataatgac

Function

NR:

description
UDP-glucose 6-dehydrogenase-like

GO: NA

KEGG:

id description
K00012 UGDH, ugd; UDPglucose 6-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036990512.1 True 2851 mRNA 0.46 12 46888000 46894991

Neighbor

gene id symbol gene type direction distance location
LOC110534109 NA coding upstream 20396 46864047 ~ 46867604 (+)
LOC110534107 LOC106603045 coding upstream 88246 46765048 ~ 46799754 (+)
LOC110534106 LOC106603046 coding upstream 140274 46732876 ~ 46747726 (+)
LOC110534104 LOC106603047 coding upstream 157273 46721765 ~ 46730727 (+)
LOC110534099 LOC106603050 coding upstream 272303 46611055 ~ 46615697 (+)
LOC110534111 LOC106603040 coding downstream 21145 46916136 ~ 46962543 (+)
LOC110534113 LOC106603039 coding downstream 114358 47009349 ~ 47016212 (+)
LOC110533128 LOC106603037 coding downstream 136438 47031429 ~ 47034505 (+)
LOC110534117 UBE2D2 coding downstream 228878 47123869 ~ 47127973 (+)
LOC110511048 LOC106603033 coding downstream 237144 47132135 ~ 47151549 (+)
G894561 NA non-coding upstream 6463 46881246 ~ 46881537 (+)
G894558 NA non-coding upstream 14000 46873589 ~ 46874000 (+)
G894512 NA non-coding upstream 46462 46799901 ~ 46841538 (+)
G894440 NA non-coding upstream 192835 46693019 ~ 46695165 (+)
G894518 NA non-coding downstream 879 46895870 ~ 46896819 (+)
G894519 NA non-coding downstream 1947 46896938 ~ 46897829 (+)
G894569 NA non-coding downstream 5281 46900272 ~ 46938947 (+)
G894596 NA non-coding downstream 55985 46950976 ~ 46951466 (+)
G895475 NA non-coding downstream 76462 46971453 ~ 46971807 (+)
G894437 LOC106603023 other upstream 187460 46627292 ~ 46700540 (+)
G894204 LOC100136012 other upstream 770057 46116285 ~ 46117943 (+)
LOC110534056 LOC106603182 other upstream 986189 45898515 ~ 45901940 (+)
LOC110534042 LOC106603097 other upstream 1244444 45622164 ~ 45654911 (+)
LOC110534033 LOC106603099 other upstream 1295691 45553481 ~ 45592329 (+)
G895515 NA other downstream 145523 47040514 ~ 47042783 (+)
G895652 LOC106603032 other downstream 307934 47202925 ~ 47204842 (+)
G895658 LOC106603032 other downstream 321416 47216407 ~ 47217071 (+)
G896043 NA other downstream 1014725 47909716 ~ 47910975 (+)

Expression


Co-expression Network